Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_02936
- Subject:
- NR_104378.1
- Aligned Length:
- 3702
- Identities:
- 1653
- Gaps:
- 1839
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGCCTCGGTCTTCCTTCCGGGTCGCGCTGGGCCGGGCCCGCCGCCGCGGCAGCAGCACGGGATACTGGGAGCCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCTCCTGCTGCCCACGCTGCGGGCTTGCGGCGAAGCTCTGTTCGCCCAGTTCCGGACCCTGCAGGGCTGTCTCA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TCTCAGCATCTGTAGGTGAAAGCAGCATGCATGTTTCAGACACGTGGATGGGCACCAACTCCTGTGCTTCCCGT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GTGTGTCAGGTGACCTGTCAAGCCAGGACCATCCTTCAGAGTTCATGCATCTCACCGAGGACACCTGACCTTTT 296
Query 1 -----------------------ATGTCACCGGTCTTTCCCATGTTAACAGTTCTGACCATGTTTTATTATATA 51
||||||||.|||||||||||||||||||||||||||||||||||||||||.
Sbjct 297 GAAGCTTCATAATTCACGACTAGATGTCACCAGTCTTTCCCATGTTAACAGTTCTGACCATGTTTTATTATATG 370
Query 52 TGCCTTCGGCGCCGAGCCAGGACAGCTACAAGAGGAGAAATGATGAACACCCATAGAGCTATAGAATCAAACAG 125
|||||||||||.||||||||||||||||||||||||||.||||||||||.||||||..||||||..||||||||
Sbjct 371 TGCCTTCGGCGTCGAGCCAGGACAGCTACAAGAGGAGATATGATGAACAGCCATAGGACTATAGTGTCAAACAG 444
Query 126 CCAGACTTCCCCTCTCAATGCAGAGGTAGTCCAGTATGCCAAAGAAGTAGTGGATTTCAGTTCCCATTATGGAA 199
||.||||||||||||||||||||||||.|||||||||||.||||||||.||||||||||||||||||||.||.|
Sbjct 445 CCGGACTTCCCCTCTCAATGCAGAGGTGGTCCAGTATGCTAAAGAAGTGGTGGATTTCAGTTCCCATTACGGCA 518
Query 200 GTGAGAATAGTATGTCCTATACTATGTGGAATTTGGCTGGTGTACCAAATGTATTCCCAAGTTCTGGTGACTTT 273
|||||||.||||||||||||||.||||||||||||||.||||||||||||||.||||||||||||||||||||.
Sbjct 519 GTGAGAACAGTATGTCCTATACCATGTGGAATTTGGCAGGTGTACCAAATGTCTTCCCAAGTTCTGGTGACTTC 592
Query 274 ACTCAGACAGCTGTGTTTCGAACTTATGGGACATGGTGGGATCAGTGTCCTAGTGCTTCCTTGCCATTCAAGAG 347
||.|||||.|||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||..||
Sbjct 593 ACGCAGACGGCTGTGTTTCGAACTTATGGGACGTGGTGGGATCAGTGTCCTAGTGCTTCCTTGCCATTCAGAAG 666
Query 348 GACGCCACCTAATTTTCAGAGCCAGGACTATGTGGAACTTACTTTTGAACAACAGGTGTATCCTACAGCTGTAC 421
|||.||..|.|.|||.|||||||||||||||||||||||.||||||||.||.||.|||||.||.||.|||||.|
Sbjct 667 GACACCGTCCAGTTTCCAGAGCCAGGACTATGTGGAACTGACTTTTGAGCAGCAAGTGTACCCCACGGCTGTCC 740
Query 422 ATGTTCTAGAAACCTATCATCCCGGAGCAGTCATTAGAATTCTCGCTTGTTCTGCAAATCCTTATTCCCCAAAT 495
||||.||.||.||.||.|||||.|||||||||||.||||||||.||.||.||.||||||||.||.|||||||||
Sbjct 741 ATGTGCTGGAGACTTACCATCCTGGAGCAGTCATCAGAATTCTGGCCTGCTCAGCAAATCCCTACTCCCCAAAT 814
Query 496 CCACCAGCTGAAGTAAGATGGGAGATTCTTTGGTCAGAGAGACCTACGAAGGTGAATGCTTCCCAAGCTCGCCA 569
||.|||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||.|||||.||
Sbjct 815 CCTCCAGCTGAAGTAAGATGGGAGATTCTTTGGTCAGAGAGACCTATGAAGGTGAATGCTTCCCAGGCTCGTCA 888
Query 570 GTTTAAACCTTGTATTAAGCAGATAAATTTCCCCACAAATCTTATACGACTGGAAGTAAATAGTTCTCTTCTGG 643
|||||||||||||||||||||.|||||||||||.|||||.||.||||||||||||||.||||||||||||||||
Sbjct 889 GTTTAAACCTTGTATTAAGCAAATAAATTTCCCTACAAACCTCATACGACTGGAAGTCAATAGTTCTCTTCTGG 962
Query 644 AATATTACACTGAATTAGATGCAGTTGTGCTACATGGTGTGAAGGACAAGCCAGTGCTTTCTCTCAAGACTTCA 717
|.||||||||.|||.||||||||||||||||.||||||..|||||||||||||.||||.||||||||||||.|.
Sbjct 963 ATTATTACACCGAACTAGATGCAGTTGTGCTGCATGGTACGAAGGACAAGCCACTGCTCTCTCTCAAGACTGCT 1036
Query 718 CTTATTGACATGAATGATATAGAAGATGATGCCTATGCAGAAAAGGATGGTTGTGGAATGGACAGTCTTAACAA 791
|||.|.||||||||||||.||||||||||.|.|||||.|||.||||||||.||||..|||||...|||||||||
Sbjct 1037 CTTGTAGACATGAATGATCTAGAAGATGACGACTATGAAGAGAAGGATGGCTGTGAGATGGATGCTCTTAACAA 1110
Query 792 AAAGTTTAGCAGTGCTGTCCTCGGGGAAGGGCCAAATAATGGGTATTTTGATAAACTACCTTATGAGCTTATTC 865
|||||||||||||||||.|||.|||||.||||||.||||||||||||||||.||||||||.||||||||.||||
Sbjct 1111 AAAGTTTAGCAGTGCTGCCCTTGGGGATGGGCCACATAATGGGTATTTTGACAAACTACCATATGAGCTCATTC 1184
Query 866 AGCTGATTCTGAATCATCTTACACTACCAGACCTGTGTAGATTAGCACAGACTTGCAAACTACTGAGCCAGCAT 939
|.||||||||||||||||||.|||||||||||||||||||||||||.||||||||||..||.||...|||||||
Sbjct 1185 AACTGATTCTGAATCATCTTTCACTACCAGACCTGTGTAGATTAGCCCAGACTTGCAGGCTTCTCCACCAGCAT 1258
Query 940 TGCTGTGATCCTCTGCAATACATCCACCTCAATCTGCAACCATACTGGGCAAAACTAGATGACACTTCTCTGGA 1013
||||||||||||||||||||.|||||||||||.|||||.|||||||||||....||.||.|||||.||.|||||
Sbjct 1259 TGCTGTGATCCTCTGCAATATATCCACCTCAACCTGCAGCCATACTGGGCCCGGCTGGACGACACGTCACTGGA 1332
Query 1014 ATTTCTACAGTCTCGCTGCACTCTTGTCCAGTGGCTTAATTTATCTTGGACTGGCAATAGAGGCTTCATCTCTG 1087
.||.||||||.|||||||....||||||||||||||||||.|.||||||||||||||.|||||.||||||||||
Sbjct 1333 GTTCCTACAGGCTCGCTGTGTGCTTGTCCAGTGGCTTAATCTGTCTTGGACTGGCAACAGAGGGTTCATCTCTG 1406
Query 1088 TTGCAGGATTTAGCAGGTTTCTGAAGGTTTGTGGATCCGAATTAGTACGCCTTGAATTGTCTTGCAGCCACTTT 1161
|..|||||||||||||||||||.|||||.|||||.||.||.||||||||||||||.||.||.||||||||||||
Sbjct 1407 TATCAGGATTTAGCAGGTTTCTAAAGGTGTGTGGGTCTGAGTTAGTACGCCTTGAGTTATCCTGCAGCCACTTT 1480
Query 1162 CTTAATGAAACTTGCTTAGAAGTTATTTCTGAGATGTGTCCAAATCTACAGGCCTTAAATCTCTCCTCCTGTGA 1235
||||||||.||||||||.||.|||||||||||.|||||.|||||||||||.|.||||||||||||.|||||.||
Sbjct 1481 CTTAATGACACTTGCTTGGAGGTTATTTCTGAAATGTGCCCAAATCTACAAGACTTAAATCTCTCATCCTGCGA 1554
Query 1236 TAAGCTACCACCTCAAGCTTTCAACCACATTGCCAAGTTATGCAGCCTTAAACGACTTGTTCTCTATCGAACAA 1309
|||.||.||||||||.|||||...|||.||||||||||||||||||||.||..|.||||||||||||||.||||
Sbjct 1555 TAAACTCCCACCTCAGGCTTTTGGCCATATTGCCAAGTTATGCAGCCTCAAGAGGCTTGTTCTCTATCGGACAA 1628
Query 1310 AAGTAGAGCAAACAGCACTGCTCAGCATTTTGAACTTCTGTTCAGAGCTTCAGCACCTCAG------------- 1370
|||||||||||||||||||.||.||||||||||||||||||.|||||||||||||||||||
Sbjct 1629 AAGTAGAGCAAACAGCACTACTGAGCATTTTGAACTTCTGTGCAGAGCTTCAGCACCTCAGCCTGGGCAGCTGT 1702
Query 1371 -------------------------------------------------------------------TTTA--- 1374
||||
Sbjct 1703 GTGATGGTAAGCACTTGAAAAGTCTTCACACTCAATGGCTTGCTTCTCTTTGTCCCCATGGGTGAGCTTTACCC 1776
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 1777 GACCCACCCCACCACATTCATATCCGTATACTTTTGCCCAACATTCAAACATTTTTTTCCCTTAAATTGGAGGG 1850
Query 1375 -------------------------------------------------------------------GGCAG-- 1379
|||||
Sbjct 1851 TGTCTTTGAAGGACTTACCTTTACCATAAAACAAGGGAGCACCGTGTCTCCAGCTGGTTTGCTGTTGGGCAGAT 1924
Query 1380 -------------------------------------------------------------------------- 1379
Sbjct 1925 ATCACACCCAGATATCAGTGGTTTAGTGAGATATTCACAAAACTCCATTTCAGTCCTGAGATTAATTCTCAGAA 1998
Query 1380 -------------------------------------------------------------------------- 1379
Sbjct 1999 ATATGGTAGAACGTAGGTGTGTGATTACTGTGGGTTTTTTTACTCCTTTGTCAGGCACAATAGAAAGATCAATG 2072
Query 1380 -------------------------------------------------------------------------- 1379
Sbjct 2073 CCCTGTATTGGGACTCAGCTGTGTTTTATTTGTTCTTTTTAAAGTTTTACTATTCTGTGAAGTCCAGATGCTGG 2146
Query 1380 -------------------------------------------------------------------------- 1379
Sbjct 2147 ATTCTTAGGTTAGAAAACATCTCTAAGCCTTAAACTTCTATATGTCTATAGAAGAGGTAATGAGAAGAGTAAAA 2220
Query 1380 -------------------------------------------------------------------------- 1379
Sbjct 2221 CGTGTTTCATCTAAACTAAATAATTCCATGGTCTATGGGTTATTCTAAGACTTAAGGACAGTTGAACTGTTGGG 2294
Query 1380 -------------------------------------------------------------------------- 1379
Sbjct 2295 ACCTGTGTGTGCACACCTACACATGCACAGAAGTGAGTCTTCCTATGGAGCAATCCATTATTATATCCTCCGGT 2368
Query 1380 -------------------------------------------------------------------------- 1379
Sbjct 2369 ACCTACAACCAAAGCACATGTAAGAGATTTCCAGACCTGTCCAACATTGCAACCACTTAGTAGTGGGCCCTAAA 2442
Query 1380 -------------------------------------------------------------------------- 1379
Sbjct 2443 TGAGAACAGTCAGAGAAATCTGGTATTCTAGTTTTAGATCCTAATTGGACATCTTTATAGTTTACCATTTGGTT 2516
Query 1380 -------------------------------------------------------------------------- 1379
Sbjct 2517 CAAATATGTCCAGAAATTTACAGTATAGCCTAGAGAAACCTTTTATAGGGGATGTATGTAAGGTATTTCCACCT 2590
Query 1380 -TTGTGT-------------------------------------CAT--------------------------- 1388
|||||| |||
Sbjct 2591 CTTGTGTTCTGTAGTCCCAGTGCTTAGGTCCTATAAAGTGCAAGCATGGACCCAAACAGTTCCAGTTTCCTGGG 2664
Query 1389 -------------------------------------------------------------------------- 1388
Sbjct 2665 TCAGTCTTGGGAACCTACTAGATTCATGTACTTCAAGTCCAATTCCTACGTTTGTAAGCAACCTTGTAGTCTTC 2738
Query 1389 -------------------------------------------------------------------------- 1388
Sbjct 2739 TTTGGAGCCCTCTAGTAGCTCTTCTAAAGGATCCCAGTGGCCCTCGATGGCAGTTTCTATGACAACAGACCAGC 2812
Query 1389 ----------------------------------GATTGAAGACTATGATGTGATAGCTAGCATGATAGGAGCC 1428
|||||||||.||||||||||||||.|||||||||||||||
Sbjct 2813 TGCTTGACTACATATTGCTTGCCTGCCCCACTAAGATTGAAGATTATGATGTGATAGCCAGCATGATAGGAGCC 2886
Query 1429 AAGTGTAAAAAACTCCGGACCCTGGATCTGTGGAGATGTAAGAATATTACTGAGAATGGAATAGCAGAACTGGC 1502
|||||||||||.||.|||||..||||||||||||||||.||||||||.||.||||||||.||||||||..||||
Sbjct 2887 AAGTGTAAAAACCTGCGGACTTTGGATCTGTGGAGATGCAAGAATATCACCGAGAATGGGATAGCAGAGTTGGC 2960
Query 1503 TTCTGGGTGTCCACTACTGGAGGAGCTTGACCTTGGCTGGTGCCCAACTCTGCAGAGCAGCACCGGGTGCTTCA 1576
||||||.|||...||.||.|||||.||||||||||||||||||||.||.||.|||||||||||.||||||||..
Sbjct 2961 TTCTGGCTGTGTTCTTCTTGAGGAACTTGACCTTGGCTGGTGCCCCACCCTTCAGAGCAGCACTGGGTGCTTTG 3034
Query 1577 CCAGACTGGCACACCAGCTCCCAAACTTGCAAAAACTCTTTCTTACAGCTAATAGATCTGTGTGTGACACAGAC 1650
.|||||||||||.||||||||||||||||||.||||||||||||||||||||.||.||||||||||||||||||
Sbjct 3035 TCAGACTGGCACGCCAGCTCCCAAACTTGCAGAAACTCTTTCTTACAGCTAACAGGTCTGTGTGTGACACAGAC 3108
Query 1651 ATTGATGAATTGGCATGTAATTGTACCAGGTTACAGCAGCTGGACATATTAGGAACAAGAATGGTAAGTCCGGC 1724
||.||.|||.||||||.||||||||||||.||||||||.||||||||||||||||||||||||||||||||.||
Sbjct 3109 ATAGAAGAACTGGCATCTAATTGTACCAGATTACAGCAACTGGACATATTAGGAACAAGAATGGTAAGTCCAGC 3182
Query 1725 ATCCTTAAGAAAACTCCTGGAATCTTGTAAAGATCTTTCTTTACTTGATGTGTCCTTCTGTTCGCAGATTGATA 1798
||||||.||||||||||||||||||||.|||||||||||..|||||||.||||||||||||||.||||||||||
Sbjct 3183 ATCCTTGAGAAAACTCCTGGAATCTTGCAAAGATCTTTCCCTACTTGACGTGTCCTTCTGTTCCCAGATTGATA 3256
Query 1799 ACAGAGCTGTGCTAGAACTGAATGCAAGCTTTCCAAAAGTGTTCATAAAAAAGAGCTTTACTCAG--------- 1863
|||..||||||.||||.||.||.||.||||||||.|||||.||||||||.||||||||||||||.
Sbjct 3257 ACAAGGCTGTGTTAGAGCTCAACGCGAGCTTTCCGAAAGTCTTCATAAAGAAGAGCTTTACTCAATGAGTTCAT 3330
Query 1864 -------------------------------------------------------------------------- 1863
Sbjct 3331 ACTGCTCTGTCACTACAATCATGCTTTGGTGGCTTCTTGTGGGGGTGGCTCTTCTGTTTGTTTGGTTTTTATAA 3404
Query 1864 -------------------------------------------------------------------------- 1863
Sbjct 3405 TGATGAGAATTAAGACATTTATAGAATTTAAAGGAAAATGTAAAATTGTCCACTGAATCAAGTAAAAATGTAAA 3478
Query 1864 -------------------------------------------------------------------------- 1863
Sbjct 3479 GAATGCTCTCTAAAATATTACAGCACTTTTCTTTAGGAATGTGTAATCTCTGATATTATTTCCCATTATGTTGA 3552
Query 1864 -------------------------------------------------------------------------- 1863
Sbjct 3553 TCAGTGGTATGCTTTAATCAGTAATTGTATGTTAAAGGAATAATATGGAAATATTCTAATTTATTTTAAAGGAA 3626
Query 1864 -------------------------------------------------------------------------- 1863
Sbjct 3627 TACTTTGAAAAATAAAGTGATCATAATATTTATGAAAAATAAAGTTGATTTTGCACATCAAAAAAAAAAAAAAA 3700
Query 1864 -- 1863
Sbjct 3701 AA 3702
