Nucleotide Global Alignment

Description

Query:
ccsbBroad304_02936
Subject:
XM_011535748.3
Aligned Length:
1866
Identities:
1135
Gaps:
726

Alignment

Query    1  ATGTCACCGGTCTTTCCCATGTTAACAGTTCTGACCATGTTTTATTATATATGCCTTCGGCGCCGAGCCAGGAC  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGTCACCGGTCTTTCCCATGTTAACAGTTCTGACCATGTTTTATTATATATGCCTTCGGCGCCGAGCCAGGAC  74

Query   75  AGCTACAAGAGGAGAAATGATGAACACCCATAGAGCTATAGAATCAAACAGCCAGACTTCCCCTCTCAATGCAG  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  AGCTACAAGAGGAGAAATGATGAACACCCATAGAGCTATAGAATCAAACAGCCAGACTTCCCCTCTCAATGCAG  148

Query  149  AGGTAGTCCAGTATGCCAAAGAAGTAGTGGATTTCAGTTCCCATTATGGAAGTGAGAATAGTATGTCCTATACT  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  AGGTAGTCCAGTATGCCAAAGAAGTAGTGGATTTCAGTTCCCATTATGGAAGTGAGAATAGTATGTCCTATACT  222

Query  223  ATGTGGAATTTGGCTGGTGTACCAAATGTATTCCCAAGTTCTGGTGACTTTACTCAGACAGCTGTGTTTCGAAC  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  ATGTGGAATTTGGCTGGTGTACCAAATGTATTCCCAAGTTCTGGTGACTTTACTCAGACAGCTGTGTTTCGAAC  296

Query  297  TTATGGGACATGGTGGGATCAGTGTCCTAGTGCTTCCTTGCCATTCAAGAGGACGCCACCTAATTTTCAGAGCC  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TTATGGGACATGGTGGGATCAGTGTCCTAGTGCTTCCTTGCCATTCAAGAGGACGCCACCTAATTTTCAGAGCC  370

Query  371  AGGACTATGTGGAACTTACTTTTGAACAACAGGTGTATCCTACAGCTGTACATGTTCTAGAAACCTATCATCCC  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  AGGACTATGTGGAACTTACTTTTGAACAACAGGTGTATCCTACAGCTGTACATGTTCTAGAAACCTATCATCCC  444

Query  445  GGAGCAGTCATTAGAATTCTCGCTTGTTCTGCAAATCCTTATTCCCCAAATCCACCAGCTGAAGTAAGATGGGA  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GGAGCAGTCATTAGAATTCTCGCTTGTTCTGCAAATCCTTATTCCCCAAATCCACCAGCTGAAGTAAGATGGGA  518

Query  519  GATTCTTTGGTCAGAGAGACCTACGAAGGTGAATGCTTCCCAAGCTCGCCAGTTTAAACCTTGTATTAAGCAGA  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GATTCTTTGGTCAGAGAGACCTACGAAGGTGAATGCTTCCCAAGCTCGCCAGTTTAAACCTTGTATTAAGCAGA  592

Query  593  TAAATTTCCCCACAAATCTTATACGACTGGAAGTAAATAGTTCTCTTCTGGAATATTACACTGAATTAGATGCA  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TAAATTTCCCCACAAATCTTATACGACTGGAAGTAAATAGTTCTCTTCTGGAATATTACACTGAATTAGATGCA  666

Query  667  GTTGTGCTACATGGTGTGAAGGACAAGCCAGTGCTTTCTCTCAAGACTTCACTTATTGACATGAATGATATAGA  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GTTGTGCTACATGGTGTGAAGGACAAGCCAGTGCTTTCTCTCAAGACTTCACTTATTGACATGAATGATATAGA  740

Query  741  AGATGATGCCTATGCAGAAAAGGATGGTTGTGGAATGGACAGTCTTAACAAAAAGTTTAGCAGTGCTGTCCTCG  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  AGATGATGCCTATGCAGAAAAGGATGGTTGTGGAATGGACAGTCTTAACAAAAAGTTTAGCAGTGCTGTCCTCG  814

Query  815  GGGAAGGGCCAAATAATGGGTATTTTGATAAACTACCTTATGAGCTTATTCAGCTGATTCTGAATCATCTTACA  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  GGGAAGGGCCAAATAATGGGTATTTTGATAAACTACCTTATGAGCTTATTCAGCTGATTCTGAATCATCTTACA  888

Query  889  CTACCAGACCTGTGTAGATTAGCACAGACTTGCAAACTACTGAGCCAGCATTGCTGTGATCCTCTGCAATACAT  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CTACCAGACCTGTGTAGATTAGCACAGACTTGCAAACTACTGAGCCAGCATTGCTGTGATCCTCTGCAATACAT  962

Query  963  CCACCTCAATCTGCAACCATACTGGGCAAAACTAGATGACACTTCTCTGGAATTTCTACAGTCTCGCTGCACTC  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  CCACCTCAATCTGCAACCATACTGGGCAAAACTAGATGACACTTCTCTGGAATTTCTACAGTCTCGCTGCACTC  1036

Query 1037  TTGTCCAGTGGCTTAATTTATCTTGGACTGGCAATAGAGGCTTCATCTCTGTTGCAGGATTTAGCAGGTTTCTG  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct 1037  TTGTCCAGTGGCTTAATTTATCTTGGACTGGCAATAGAGGCTTCATCTCTGTTGCAGGATTTAGCAGG------  1104

Query 1111  AAGGTTTGTGGATCC--GAATTAGTACGCCTTGAATTGTCTTGCAGCCACTTTCTTAATGAAACTTG-CTTAGA  1181
                        .||  |||  ||.||              ||.|||        |||||||    | ||..||
Sbjct 1105  ------------ACCAAGAA--AGAAC--------------TGAAGC--------TAATGAA----GTCTGTGA  1138

Query 1182  AGTTATTTCTGAGATGTGTCCAAATCTACAGGCCTTAAATCTCTCCTCCTGTGATAAGCTACCACCTCAAGCTT  1255
            |  ||||                                                                   
Sbjct 1139  A--TATT-------------------------------------------------------------------  1143

Query 1256  TCAACCACATTGCCAAGTTATGCAGCCTTAAACGACTTGTTCTCTATCGAACAAAAGTAGAGCAAACAGCACTG  1329
                                                                                      
Sbjct 1144  --------------------------------------------------------------------------  1143

Query 1330  CTCAGCATTTTGAACTTCTGTTCAGAGCTTCAGCACCTCAGTTTAGGCAGTTGTGTCATGATTGAAGACTATGA  1403
                                                                                      
Sbjct 1144  --------------------------------------------------------------------------  1143

Query 1404  TGTGATAGCTAGCATGATAGGAGCCAAGTGTAAAAAACTCCGGACCCTGGATCTGTGGAGATGTAAGAATATTA  1477
                                                                                      
Sbjct 1144  --------------------------------------------------------------------------  1143

Query 1478  CTGAGAATGGAATAGCAGAACTGGCTTCTGGGTGTCCACTACTGGAGGAGCTTGACCTTGGCTGGTGCCCAACT  1551
                                                                                      
Sbjct 1144  --------------------------------------------------------------------------  1143

Query 1552  CTGCAGAGCAGCACCGGGTGCTTCACCAGACTGGCACACCAGCTCCCAAACTTGCAAAAACTCTTTCTTACAGC  1625
                                                                                      
Sbjct 1144  --------------------------------------------------------------------------  1143

Query 1626  TAATAGATCTGTGTGTGACACAGACATTGATGAATTGGCATGTAATTGTACCAGGTTACAGCAGCTGGACATAT  1699
                                                                                      
Sbjct 1144  --------------------------------------------------------------------------  1143

Query 1700  TAGGAACAAGAATGGTAAGTCCGGCATCCTTAAGAAAACTCCTGGAATCTTGTAAAGATCTTTCTTTACTTGAT  1773
                                                                                      
Sbjct 1144  --------------------------------------------------------------------------  1143

Query 1774  GTGTCCTTCTGTTCGCAGATTGATAACAGAGCTGTGCTAGAACTGAATGCAAGCTTTCCAAAAGTGTTCATAAA  1847
                                                                                      
Sbjct 1144  --------------------------------------------------------------------------  1143

Query 1848  AAAGAGCTTTACTCAG  1863
                            
Sbjct 1144  ----------------  1143

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.