Nucleotide Global Alignment

Description

Query:
ccsbBroad304_02936
Subject:
XR_390324.2
Aligned Length:
2221
Identities:
1420
Gaps:
592

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CGGTCTTCCTTCCGGGTCGCGCTGGGCCGGGCCCGCCGCCGCGGCAGCAGCACGGGATACTGGGAGCCGTCTCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGCTGCCCACGCTGCGGGCTTGCGGCGAAGCTCTGTTCGCCCAGTTCCGGACCCTGCAGGGCTGTCTCATCTCA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GCATCTGTAGGTGAAAGCAGCATGCATGTTTCAGACACGTGGATGGGCACCAACTCCTGTGCTTCCCGTGTGTG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TCAGGTGACCTGTCAAGCCAGGACCATCCTTCAGAGTTCATGCATCTCACCGAGGACACCTGACCTTTTGAAGC  296

Query    1  ------------------ATGTCACCGGTCTTTCCCATGTTAACAGTTCTGACCATGTTTTATTATATATGCCT  56
                              ||||||||.|||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct  297  TTCATAATTCACGACTAGATGTCACCAGTCTTTCCCATGTTAACAGTTCTGACCATGTTTTATTATATGTGCCT  370

Query   57  TCGGCGCCGAGCCAGGACAGCTACAAGAGGAGAAATGATGAACACCCATAGAGCTATAGAATCAAACAGCCAGA  130
            ||||||.||||||||||||||||||||||||||.||||||||||.||||||..||||||..||||||||||.||
Sbjct  371  TCGGCGTCGAGCCAGGACAGCTACAAGAGGAGATATGATGAACAGCCATAGGACTATAGTGTCAAACAGCCGGA  444

Query  131  CTTCCCCTCTCAATGCAGAGGTAGTCCAGTATGCCAAAGAAGTAGTGGATTTCAGTTCCCATTATGGAAGTGAG  204
            ||||||||||||||||||||||.|||||||||||.||||||||.||||||||||||||||||||.||.||||||
Sbjct  445  CTTCCCCTCTCAATGCAGAGGTGGTCCAGTATGCTAAAGAAGTGGTGGATTTCAGTTCCCATTACGGCAGTGAG  518

Query  205  AATAGTATGTCCTATACTATGTGGAATTTGGCTGGTGTACCAAATGTATTCCCAAGTTCTGGTGACTTTACTCA  278
            ||.||||||||||||||.||||||||||||||.||||||||||||||.||||||||||||||||||||.||.||
Sbjct  519  AACAGTATGTCCTATACCATGTGGAATTTGGCAGGTGTACCAAATGTCTTCCCAAGTTCTGGTGACTTCACGCA  592

Query  279  GACAGCTGTGTTTCGAACTTATGGGACATGGTGGGATCAGTGTCCTAGTGCTTCCTTGCCATTCAAGAGGACGC  352
            |||.|||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||..|||||.|
Sbjct  593  GACGGCTGTGTTTCGAACTTATGGGACGTGGTGGGATCAGTGTCCTAGTGCTTCCTTGCCATTCAGAAGGACAC  666

Query  353  CACCTAATTTTCAGAGCCAGGACTATGTGGAACTTACTTTTGAACAACAGGTGTATCCTACAGCTGTACATGTT  426
            |..|.|.|||.|||||||||||||||||||||||.||||||||.||.||.|||||.||.||.|||||.|||||.
Sbjct  667  CGTCCAGTTTCCAGAGCCAGGACTATGTGGAACTGACTTTTGAGCAGCAAGTGTACCCCACGGCTGTCCATGTG  740

Query  427  CTAGAAACCTATCATCCCGGAGCAGTCATTAGAATTCTCGCTTGTTCTGCAAATCCTTATTCCCCAAATCCACC  500
            ||.||.||.||.|||||.|||||||||||.||||||||.||.||.||.||||||||.||.|||||||||||.||
Sbjct  741  CTGGAGACTTACCATCCTGGAGCAGTCATCAGAATTCTGGCCTGCTCAGCAAATCCCTACTCCCCAAATCCTCC  814

Query  501  AGCTGAAGTAAGATGGGAGATTCTTTGGTCAGAGAGACCTACGAAGGTGAATGCTTCCCAAGCTCGCCAGTTTA  574
            |||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||.|||||.|||||||
Sbjct  815  AGCTGAAGTAAGATGGGAGATTCTTTGGTCAGAGAGACCTATGAAGGTGAATGCTTCCCAGGCTCGTCAGTTTA  888

Query  575  AACCTTGTATTAAGCAGATAAATTTCCCCACAAATCTTATACGACTGGAAGTAAATAGTTCTCTTCTGGAATAT  648
            ||||||||||||||||.|||||||||||.|||||.||.||||||||||||||.|||||||||||||||||.|||
Sbjct  889  AACCTTGTATTAAGCAAATAAATTTCCCTACAAACCTCATACGACTGGAAGTCAATAGTTCTCTTCTGGATTAT  962

Query  649  TACACTGAATTAGATGCAGTTGTGCTACATGGTGTGAAGGACAAGCCAGTGCTTTCTCTCAAGACTTCACTTAT  722
            |||||.|||.||||||||||||||||.||||||..|||||||||||||.||||.||||||||||||.|.|||.|
Sbjct  963  TACACCGAACTAGATGCAGTTGTGCTGCATGGTACGAAGGACAAGCCACTGCTCTCTCTCAAGACTGCTCTTGT  1036

Query  723  TGACATGAATGATATAGAAGATGATGCCTATGCAGAAAAGGATGGTTGTGGAATGGACAGTCTTAACAAAAAGT  796
            .||||||||||||.||||||||||.|.|||||.|||.||||||||.||||..|||||...||||||||||||||
Sbjct 1037  AGACATGAATGATCTAGAAGATGACGACTATGAAGAGAAGGATGGCTGTGAGATGGATGCTCTTAACAAAAAGT  1110

Query  797  TTAGCAGTGCTGTCCTCGGGGAAGGGCCAAATAATGGGTATTTTGATAAACTACCTTATGAGCTTATTCAGCTG  870
            ||||||||||||.|||.|||||.||||||.||||||||||||||||.||||||||.||||||||.|||||.|||
Sbjct 1111  TTAGCAGTGCTGCCCTTGGGGATGGGCCACATAATGGGTATTTTGACAAACTACCATATGAGCTCATTCAACTG  1184

Query  871  ATTCTGAATCATCTTACACTACCAGACCTGTGTAGATTAGCACAGACTTGCAAACTACTGAGCCAGCATTGCTG  944
            |||||||||||||||.|||||||||||||||||||||||||.||||||||||..||.||...||||||||||||
Sbjct 1185  ATTCTGAATCATCTTTCACTACCAGACCTGTGTAGATTAGCCCAGACTTGCAGGCTTCTCCACCAGCATTGCTG  1258

Query  945  TGATCCTCTGCAATACATCCACCTCAATCTGCAACCATACTGGGCAAAACTAGATGACACTTCTCTGGAATTTC  1018
            |||||||||||||||.|||||||||||.|||||.|||||||||||....||.||.|||||.||.|||||.||.|
Sbjct 1259  TGATCCTCTGCAATATATCCACCTCAACCTGCAGCCATACTGGGCCCGGCTGGACGACACGTCACTGGAGTTCC  1332

Query 1019  TACAGTCTCGCTGCACTCTTGTCCAGTGGCTTAATTTATCTTGGACTGGCAATAGAGGCTTCATCTCTGTTGCA  1092
            |||||.|||||||....||||||||||||||||||.|.||||||||||||||.|||||.|||||||||||..||
Sbjct 1333  TACAGGCTCGCTGTGTGCTTGTCCAGTGGCTTAATCTGTCTTGGACTGGCAACAGAGGGTTCATCTCTGTATCA  1406

Query 1093  GGATTTAGCAGGTTTCTGAAGGTTTGTGGATCCGAATTAGTACGCCTTGAATTGTCTTGCAGCCACTTTCTTAA  1166
            |||||||||||||||||.|||||.|||||.||.||.||||||||||||||.||.||.|||||||||||||||||
Sbjct 1407  GGATTTAGCAGGTTTCTAAAGGTGTGTGGGTCTGAGTTAGTACGCCTTGAGTTATCCTGCAGCCACTTTCTTAA  1480

Query 1167  TGAAACTTGCTTAGAAGTTATTTCTGAGATGTGTCCAAATCTACAGGCCTTAAATCTCTCCTCCTGTGATAAGC  1240
            |||.||||||||.||.|||||||||||.|||||.|||||||||||.|.||||||||||||.|||||.|||||.|
Sbjct 1481  TGACACTTGCTTGGAGGTTATTTCTGAAATGTGCCCAAATCTACAAGACTTAAATCTCTCATCCTGCGATAAAC  1554

Query 1241  TACCACCTCAAGCTTTCAACCACATTGCCAAGTTATGCAGCCTTAAACGACTTGTTCTCTATCGAACAAAAGTA  1314
            |.||||||||.|||||...|||.||||||||||||||||||||.||..|.||||||||||||||.|||||||||
Sbjct 1555  TCCCACCTCAGGCTTTTGGCCATATTGCCAAGTTATGCAGCCTCAAGAGGCTTGTTCTCTATCGGACAAAAGTA  1628

Query 1315  GAGCAAACAGCACTGCTCAGCATTTTGAACTTCTGTTCAGAGCTTCAGCACCTCAGTTTAGGCAGTTGTGTCAT  1388
            ||||||||||||||.||.||||||||||||||||||.|||||||||||||||||||..|.|||||.|||||.||
Sbjct 1629  GAGCAAACAGCACTACTGAGCATTTTGAACTTCTGTGCAGAGCTTCAGCACCTCAGCCTGGGCAGCTGTGTGAT  1702

Query 1389  G----ATTGAAGA----CTATGATGTGATAGCTAGCATGATAGGAGCCAAGTGTAAAAAACTCC-GGACCCTGG  1453
            |    |.||...|    ||||.|.||    ||.|||||    |||.||      |||.|..||| |...|||||
Sbjct 1703  GTCCCAGTGCTTAGGTCCTATAAAGT----GCAAGCAT----GGACCC------AAACAGTTCCAGTTTCCTGG  1762

Query 1454  ATCTG---TGGAGATGTAAGAATATTACTGAGA---ATGGAATAGCAGAACTGGCTTCTGGGTGTCCA----CT  1517
            .||.|   |||        ||| ..|||| |||   |||.|             ||||   ..|||||    ||
Sbjct 1763  GTCAGTCTTGG--------GAA-CCTACT-AGATTCATGTA-------------CTTC---AAGTCCAATTCCT  1810

Query 1518  ACTGGAGGAGCTTG------ACCTTG--------GCTGGTGCCCAACTCTGCAGAGCAGCACCGGGTGCT----  1573
            ||       |.|||      ||||||        ..|||.|||   ||||    ||.|||.|    |.||    
Sbjct 1811  AC-------GTTTGTAAGCAACCTTGTAGTCTTCTTTGGAGCC---CTCT----AGTAGCTC----TTCTAAAG  1866

Query 1574  --TCACCAGACTGGCACACCAGCTCCCAAACTTGCAAAAACTCTTTCTTACAGCTAATAGATCTGTGTGTGAC-  1644
              || ||||  ||||.|.|.|          |.|||      .||||                    |.|||| 
Sbjct 1867  GATC-CCAG--TGGCCCTCGA----------TGGCA------GTTTC--------------------TATGACA  1901

Query 1645  ACAGACATTGATGAATTGGCATGTAATTGTACCAGGTTACAGCAGCTGG---ACATATTAGGAACAAGAATGGT  1715
            ||||||                                 ||||.|||.|   |||||||        |..||  
Sbjct 1902  ACAGAC---------------------------------CAGCTGCTTGACTACATATT--------GCTTG--  1932

Query 1716  AAGTCCGGCATCCTTAAGAAAACTCCTGGAATCTTGTAAAGATCTTTCTTTACTTGATGTGTCCTTCTGTTCG-  1788
                ||.||..|..|||||              |||  ||||       |||  |||||        ||.|.| 
Sbjct 1933  ----CCTGCCCCACTAAGA--------------TTG--AAGA-------TTA--TGATG--------TGATAGC  1969

Query 1789  CAGATTGATAACAGAGCTGTGCTAGAACTGAATGCAAGCTTTCCAAAAGTGTTCATAAAAAAGAGCTTTACTCA  1862
            |||..|||||  .||||                 |||                                     
Sbjct 1970  CAGCATGATA--GGAGC-----------------CAA-------------------------------------  1987

Query 1863  G  1863
             
Sbjct 1988  -  1987

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