Nucleotide Global Alignment

Description

• Query: ccsbBroad304_03028
• Subject: NR_028477.1
• Aligned Length: 2132
• Identities: 1173
• Gaps: 959

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGTCCTTCAGCCTCGTTCCCGGGCAGTATAAAGTTTGCTGTCTCCTTTGTTCGCCCTCGTTGCGCAGTAGTGCT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGCGGCTTCGCGGTTCGGTCCTCGCACCCGGCAGCCGCCACTGGTGCTGAGCTGCTAGGAAGCCCCTATCGCCG  148

Query    1  --------------------------------------------------------------ATGGTTGAAGCA  12
                                                                          ||||||||||||
Sbjct  149  AGCTCGTTGGAGCTTGAACCCATTGTCACCCCTCCGACTCACCGGCCCAAAAAAAAAAAAACATGGTTGAAGCA  222

Query   13  GATCGCCCAGGAAAGCTCTTCATTGGTGGGCTTAATACGGAAACAAATGAGAAAGCTCTTGAAGCAGTATTTGG  86
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GATCGCCCAGGAAAGCTCTTCATTGGTGGGCTTAATACGGAAACAAATGAGAAAGCTCTTGAAGCAGTATTTGG  296

Query   87  CAAATATGGACGAATAGTGGA-----------------------------------AGTACTCTTGATGAAAGA  125
            |||||||||||||||||||||                                   ||||||||||||||||||
Sbjct  297  CAAATATGGACGAATAGTGGAAGGGTAACACTTTATTTTTCTGAAAACTACTTTTTAGTACTCTTGATGAAAGA  370

Query  126  CCGTGAAACCAACAAATCAAGAGGATTTGCTTTTGTCACCTTTGAAAGCCCAGCAGACGCTAAGGATGCAGCCA  199
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CCGTGAAACCAACAAATCAAGAGGATTTGCTTTTGTCACCTTTGAAAGCCCAGCAGACGCTAAGGATGCAGCCA  444

Query  200  GAGACATGAATGGAAAGTCATTAGATGGAAAAGCCATCAAGGTGGAACAAGCCACCAAACCATCATTTGAAAGT  273
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GAGACATGAATGGAAAGTCATTAGATGGAAAAGCCATCAAGGTGGAACAAGCCACCAAACCATCATTTGAAAGT  518

Query  274  GGTAGACGTGGACCGCCTCCACCTCCAAGAAGTAGAGGCCCTCCAAGAGGTCTTAGAGGTGGAAGAGGAGGAAG  347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GGTAGACGTGGACCGCCTCCACCTCCAAGAAGTAGAGGCCCTCCAAGAGGTCTTAGAGGTGGAAGAGGAGGAAG  592

Query  348  TGGAGGAACCAGGGGACCTCCCTCACGGGGAGGACACATGGATGACGGTGGATATTCCATGAATTTTAACATGA  421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TGGAGGAACCAGGGGACCTCCCTCACGGGGAGGACACATGGATGACGGTGGATATTCCATGAATTTTAACATGA  666

Query  422  GTTCTTCCAGGGGACCACTCCCAGTAAAAAGAGGACCACCACCAAGAAGTGGGGGTCCTCCTCCTAAGAGATCT  495
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GTTCTTCCAGGGGACCACTCCCAGTAAAAAGAGGACCACCACCAAGAAGTGGGGGTCCTCCTCCTAAGAGATCT  740

Query  496  GCACCTTCAGGACCAGTTCGCAGTAGCAGTGGAATGGGAGGAAGAGCTCCTGTATCACGTGGAAGAGATAGTTA  569
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GCACCTTCAGGACCAGTTCGCAGTAGCAGTGGAATGGGAGGAAGAGCTCCTGTATCACGTGGAAGAGATAGTTA  814

Query  570  TGGAGGTCCACCTCGAAGGGAACCGCTGCCCTCTCGTAGAGATGTTTATTTGTCCCCAAGAGATGATGGGTATT  643
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TGGAGGTCCACCTCGAAGGGAACCGCTGCCCTCTCGTAGAGATGTTTATTTGTCCCCAAGAGATGATGGGTATT  888

Query  644  CTACTAAAGACAGCTATTCAAGCAGAGATTACCCAAGTTCTCGTGATACTAGAGATTATGCACCACCACCACGA  717
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CTACTAAAGACAGCTATTCAAGCAGAGATTACCCAAGTTCTCGTGATACTAGAGATTATGCACCACCACCACGA  962

Query  718  GATTATACTTACCGTGATTATGGTCATTCCAGTTCACGTGATGACTATCCATCAAGAGGATATAGCGATAGAGA  791
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GATTATACTTACCGTGATTATGGTCATTCCAGTTCACGTGATGACTATCCATCAAGAGGATATAGCGATAGAGA  1036

Query  792  TGGATATGGTCGTGATCGTGACTATTCAGATCATCCAAGTGGAGGTTCCTACAGAGATTCATATGAGAGTTATG  865
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TGGATATGGTCGTGATCGTGACTATTCAGATCATCCAAGTGGAGGTTCCTACAGAGATTCATATGAGAGTTATG  1110

Query  866  GTAACTCACGTAGTGCTCCACCTACACGAGGGCCCCCGCCATCTTATGGTGGAAGCAGTCGCTATGATGATTAC  939
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GTAACTCACGTAGTGCTCCACCTACACGAGGGCCCCCGCCATCTTATGGTGGAAGCAGTCGCTATGATGATTAC  1184

Query  940  AGCAGCTCACGTGACGGATATGGTGGAAGTCGAGACAGTTACTCAAGCAGCCGAAGTGATCTCTACTCAAGTGG  1013
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  AGCAGCTCACGTGACGGATATGGTGGAAGTCGAGACAGTTACTCAAGCAGCCGAAGTGATCTCTACTCAAGTGG  1258

Query 1014  TCGTGATCGGGTTGGCAGACAAGAAAGAGGGCTTCCCCCTTCTATGGAAAGGGGGTACCCTCCTCCACGTGATT  1087
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  TCGTGATCGGGTTGGCAGACAAGAAAGAGGGCTTCCCCCTTCTATGGAAAGGGGGTACCCTCCTCCACGTGATT  1332

Query 1088  CCTACAGCAGTTCAAGCCGCGGAGCACCAAGAGGTGGTGGCCGTGGAGGAAGCCGATCTGATAGAGGGGGAGGC  1161
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  CCTACAGCAGTTCAAGCCGCGGAGCACCAAGAGGTGGTGGCCGTGGAGGAAGCCGATCTGATAGAGGGGGAGGC  1406

Query 1162  AGAAGCAGATAC--------------------------------------------------------------  1173
            ||||||||||||                                                              
Sbjct 1407  AGAAGCAGATACTAGAAACAAACAAAACTTTGGACCAAAATCCCAGTTCAAAGAAACAAAAAGTGGAAACTATT  1480

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 1481  CTATCATAACTACCCAAGGACTACTAAAAGGAAAAATTGTGTTACTTTTTTTAAATTCCCTGTTAAGTTCCCCT  1554

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 1555  CCATAATTTTTATGTTCTTGTGAGGAAAAAAGTAAAACATGTTTAATTTTATTTGACTTTCGCATTGCTTTTCA  1628

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 1629  ACAAGCAAATGTTAAATGTGTTAAGACTTGTACTAGTGTTGTAACTTTCCAAGTAAAAGTATCCCCTAAAGGCC  1702

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 1703  ACTTCCTATCTGATTTTTCCCAGCAAATGAGGCAGGCAATTCTAAGATCTTCCACAAAACATCTAGCCATCTAA  1776

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 1777  AATGGAGAGATGAATCATTCTACCTATACAAACAAGCTAGCTATTAGAGGGTGGTTGGGGTATGCTACTCATAA  1850

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 1851  GATTTCAGGGTGTCTTCCAACTGAAATCTCAATGTTCTCAGTACGAAAAACCTGAAATCACATGCCTATGTAAG  1924

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 1925  GAAAGTGCTATTCACCCAGTAAACCCAAAAAAGCAAATGGATAATGCTGGCCATTTTGCCTTTCTGACATTTCC  1998

Query 1174  --------------------------------------------------------------------------  1173
                                                                                      
Sbjct 1999  TTGGGAATCTGCAAGAACCTCCCCTTTCCCTTCCCCCAATAAGACCATTTAAGTGTGTGTTAAACAACTACAGA  2072

Query 1174  ------------------------------------------------------------  1173
                                                                        
Sbjct 2073  ATACTAAATAAAAAGTTTGGCCAAAACCAACCATGAAGCTGCAAAAAAAAAAAAAAAAAA  2132