Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_03028
- Subject:
- NR_029425.1
- Aligned Length:
- 2414
- Identities:
- 1008
- Gaps:
- 1279
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGTTCTTCAGCCTCGTTCCCGGGTAGTATAAAGATTGCAGTCTCCTTTGTTCGCCCTCGTTGCGCAGTCGTCCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGCGTCATTTCTGTTCCGTTCTGAAAATCGGTAGCTGTCACTGGTGCGGCGCTGCTCGGGAGGTCCGGTCGGCG 148
Query 1 ------------------------------------------------------------ATGGTTGAAGCAGA 14
||||||||||||||
Sbjct 149 AGCTCAGAGGAGCTTGAGACCGTCGCAGTCCCCTCGGACCCCCATCGGTTAAGAGGAAAAATGGTTGAAGCAGA 222
Query 15 TCGCCCAGGAAAGCTCTTCATTGGTGGGCTTAATACGGAAACAAATGAGAAAGCTCTTGAAGCAGTATTTGGCA 88
||||||||||||||||||.|||||||||||||||||.||.||.|||||||||||.|||||.|||||.|||||||
Sbjct 223 TCGCCCAGGAAAGCTCTTTATTGGTGGGCTTAATACAGAGACGAATGAGAAAGCCCTTGAGGCAGTGTTTGGCA 296
Query 89 AATATGGACGAATAGTGGAAGTACTCTTGATGAAAGACCGTGAAACCAACAAATCAAGAGGATTTGCTTTTGTC 162
||||||||||||||||||||||.||.||||||||.|||||.|||||.||.||.|||||||||||.|||||||||
Sbjct 297 AATATGGACGAATAGTGGAAGTTCTTTTGATGAAGGACCGAGAAACGAATAAGTCAAGAGGATTCGCTTTTGTC 370
Query 163 ACCTTTGAAAGCCCAGCAGACGCTAAGGATGCAGCCAGAGACATGAATGGAAAGTCATTAGATGGAAAAGCCAT 236
||.|||||||||||||||||.||.||||||||.|||||||||||||||||||||||.||||||||.||||||||
Sbjct 371 ACTTTTGAAAGCCCAGCAGATGCAAAGGATGCTGCCAGAGACATGAATGGAAAGTCCTTAGATGGGAAAGCCAT 444
Query 237 CAAGGTGGAACAAGCCACCAAACCATCATTTGAAAGTGGTAGACGTGGACCGCCTCCACCTCCAAGAAGTAGAG 310
|||||||||.||||||||||||||||||||||||||||||||||||||||..||.||||||||||||||.||||
Sbjct 445 CAAGGTGGAGCAAGCCACCAAACCATCATTTGAAAGTGGTAGACGTGGACTACCCCCACCTCCAAGAAGCAGAG 518
Query 311 GCCCTCCAAGAGGTCTTAGAGGTGGAAGAGGAGGAAGTGGAGGAACCAGGGGACCTCCCTCACGGGGAGGACAC 384
|||||||.|||||||||.||||.||||||||||||||||||||||||||.|||||.|||||.||||||||||||
Sbjct 519 GCCCTCCCAGAGGTCTTCGAGGAGGAAGAGGAGGAAGTGGAGGAACCAGAGGACCCCCCTCCCGGGGAGGACAC 592
Query 385 ATGGATGACGGTGGATATTCCATGAATTTTAACATGAGTTCTTCCAGGGGACCACTCCCAGTAAAAAGAGGACC 458
||||||||.|||||.||.|||||||||||||.|||||||||||||||.|||||.||.|||||||||.|||||||
Sbjct 593 ATGGATGATGGTGGCTACTCCATGAATTTTACCATGAGTTCTTCCAGAGGACCTCTGCCAGTAAAACGAGGACC 666
Query 459 ACCACCAAGAAGTGGGGGTCCTCCTCCTAAGAGATCTGCACCTTCAGGACCAGTTCGCAGTAGCAGTGGAATGG 532
|||||||.|||||||.||||||||||||||.|||||.||||||||.|||||||||||.||.|||||||||.|||
Sbjct 667 ACCACCACGAAGTGGAGGTCCTCCTCCTAAAAGATCAGCACCTTCTGGACCAGTTCGTAGCAGCAGTGGACTGG 740
Query 533 GAGGAAGAGCTCCTGTATCACGTGGAAGAGATAGTTATGGAGGTCCACCTCGAAGGGAACCGCTGCCCTCTCGT 606
||||||||||.|||||.||.||||||||||||.||||.|||||.||.||.||||||||.||.|||||.|||||.
Sbjct 741 GAGGAAGAGCCCCTGTGTCCCGTGGAAGAGATGGTTACGGAGGCCCGCCACGAAGGGAGCCCCTGCCTTCTCGA 814
Query 607 AGAGATGTTTATTTGTCCCCAAGAGATGATGGGTATTCTACTAAAGACAGCTATTCAAGCAGAGATTACCCAAG 680
||||||||||||||||||||.|||||||||||.|||||.||||||||||||||||||||||||||.||.|||||
Sbjct 815 AGAGATGTTTATTTGTCCCCGAGAGATGATGGATATTCCACTAAAGACAGCTATTCAAGCAGAGAATATCCAAG 888
Query 681 TTCTCGTGATACTAGAGATTATGCACCACCACCACGAGATTATACTTACCGTGATTATGGTCATTCCAGTTCAC 754
||||||.|||||..||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||
Sbjct 889 TTCTCGAGATACACGAGATTATGCACCACCACCAAGAGATTATACTTACCGTGATTATGGTCATTCCAGTTCAC 962
Query 755 GTGATGACTATCCATCAAGAGGATATAGCGATAGAGATGGATATGGTCGTGATCGTGACTATTCAGATCATCCA 828
|.||||||||||||||||||||.|||||.|||||||||||.||||||||.|||||.||||||||||||||||||
Sbjct 963 GAGATGACTATCCATCAAGAGGCTATAGTGATAGAGATGGCTATGGTCGGGATCGGGACTATTCAGATCATCCA 1036
Query 829 AGTGGAGGTTCCTACAGAGATTCATATGAGAGTTATGG------------------------------------ 866
|||||||||||||||||||||||.||||||||||||||
Sbjct 1037 AGTGGAGGTTCCTACAGAGATTCGTATGAGAGTTATGGTTGAATCTAATGGTCATACTGTCCTGGAGTGCTGAT 1110
Query 867 ----TAACTCAC-GTAG----------------------------TGCTC-------------CACCTACACGA 894
|.|.|||| |||| ||||| || ||
Sbjct 1111 TGATTGATTCACAGTAGATAAAGCTGGCAGTAAGGAACAATCAGATGCTCAGAGTTGCTGAAGCA-------GA 1177
Query 895 GG--------------GCCCCCGC------------------CATC--------TTATGGTGGAAGCAGTCGCT 928
|| |||.|.|| |||| || ||||..|.|||.|.|.|
Sbjct 1178 GGAACGCTGAGACTAAGCCACAGCAGTTGCTTACCCAGTGCGCATCAGAATTGGTT-TGGTACAGGCAATAGTT 1250
Query 929 ---------------------------------ATGATGATTACA----------------------------- 940
|.||||||||.|
Sbjct 1251 TGTTTTTTTTTTTTTTTTGTCTTCAAGGGAGGGAGGATGATTAAACCGAATCAGTGCTTGTTAATCCTTAATTA 1324
Query 941 -------GCAGCTCAC-------------------GTGACGGATA-----TGGTGGAAGTCGAGACAGTTACTC 983
||| .|||| |.||.|||.| |||| ||||.|||..|..|||.|
Sbjct 1325 GGGAGTGGCA-ATCACTTAAAACTGACCCAATGGAGAGAGGGAGACTAATTGGT--AAGTGGAGGTACCTACCC 1395
Query 984 AAGCAG--CCGAAGTGATCTCT--------ACTCAAGTGGTCGTGATCGGGTTGGCAGACAAGAAAGAGGGC-- 1045
|||.|| |.| |||| |||| |.||| ||||| ||| |||| |||..|.|||||
Sbjct 1396 AAGAAGTTCGG--GTGA-CTCTTTGTAGACATTCA----GTCGT--TCG----GGCA---AAGTCATAGGGCAA 1453
Query 1046 ---------TTCCCCCTTCT------------------ATGGAAAG----GGGGTACCCT---CCTCCA-CGTG 1084
|||...||..| ||.|||.| |||| || .||||| .|||
Sbjct 1454 CTCTGCAATTTCGAGCTGATGATCACTGAGAGAAGAACATTGAATGAGCTGGGG----CTGTAACTCCATGGTG 1523
Query 1085 A-----TTCCTA--CAGCAG-----------TTCAAGCC---GC-GGAGCAC-CAA------------------ 1117
| |.|||| ||.||| |||||.|| || ||| ||| |||
Sbjct 1524 AGTGCTTGCCTAAGCACCAGTGAGGCTAGCATTCAACCCCTGGCAGGA-CACACAAACATTTCAGTCAGAAAAA 1596
Query 1118 ------------GAGGTGGTGGCC--GTGGAGGAA----GCC-GATCTG--------AT--------------- 1149
.|.|| .||.|| .|.||.||| ||| .|||.| ||
Sbjct 1597 TTATACCTCACTCATGT-CTGACCCATTTGATGAATTTTGCCTCATCAGTAGGAAACATTATTAGTTGTCTTGT 1669
Query 1150 -------AGAGGGGGAGGCAGAAGCAGATAC------------------------------------------- 1173
|||.||||| |||| ||| |.|
Sbjct 1670 AAAACTAAGAAGGGGA---AGAA-CAG-TGCTGGGAAATGAAAGTCAAAACTGGCAACGTTAGGCTAGTTAGGA 1738
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 1739 AAACATATTGGGAACAAAAATAGGTCACTAGGTCACTGTGGTTTTATAAAAGGTACTTTACCCTCAGGGCTCCA 1812
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 1813 TCTTGGAAACAAACCATGAAGCTATAACTCTAGTTTACTGCTTTGGAAACTCAGCCAGTAATGTGAACGCAGAT 1886
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 1887 AATCTCAACAGAAGCGGGTTGAGTTTTAGAGTCAAAGAATTTAACTCCACTTGTGAGATTTTTCTTACGAATTT 1960
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 1961 GTTACAGTGCTGTTGAGGGGATTTCAAGCCTTTCGTCCTCTAATCAGGCCCGGAGTAGGTTCTGCTGTCAAGAC 2034
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 2035 CTTTAGCTCGTGACATTTTATATGCATTTTTTAGTTTGTCATGGGCAATATTACACTAAATATGAATGTTAAAT 2108
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 2109 TCAAAGTGGGAAGTTGGTAGAAAATTTCAAGAGACTTTTTTGACAAGTGGTAGAATATAGAACTAGCAGGTCTA 2182
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 2183 AAATCTGCAATTAGAAAAAAAAAATTAGCCTTGATTCTTCTGGCTAAACTCTGGTTGTAGAAGAATTTGAATAA 2256
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 2257 TACACAAAGTGCTGTGGTTTATTTGGTAGCTGGATGTAGAACATTATAGATCATTTATTTATTTATTTATTTAT 2330
Query 1174 ---------------------------------------------- 1173
Sbjct 2331 TTTGGAATGTTTTGTATTGAAGCCCAATAAAACTTGAATGTGTGTC 2376
