Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_03028
- Subject:
- XR_878098.2
- Aligned Length:
- 3632
- Identities:
- 1095
- Gaps:
- 2459
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGTTCTTCAGCCTCGTTCCCGGGTAGTATAAAGATTGCAGTCTCCTTTGTTCGCCCTCGTTGCGCAGTCGTCCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGCGTCATTTCTGTTCCGTTCTGAAAATCGGTAGCTGTCACTGGTGCGGCGCTGCTCGGGAGGTCCGGTCGGCG 148
Query 1 ---------------------------------------------------------------ATGGTTGAAGC 11
|||||||||||
Sbjct 149 AGCTCAGAGGAGCTTGAGACCGTCGCAGTCCCCTCGGCAGACCCCCATCGGTTAAGAGGAAAAATGGTTGAAGC 222
Query 12 AGATCGCCCAGGAAAGCTCTTCATTGGTGGGCTTAATACGGAAACAAATGAGAAAGCTCTTGAAGCAGTATTTG 85
|||||||||||||||||||||.|||||||||||||||||.||.||.|||||||||||.|||||.|||||.||||
Sbjct 223 AGATCGCCCAGGAAAGCTCTTTATTGGTGGGCTTAATACAGAGACGAATGAGAAAGCCCTTGAGGCAGTGTTTG 296
Query 86 GCAAATATGGACGAATAGTGGAAGTACTCTTGATGAAAGACCGTGAAACCAACAAATCAAGAGGATTTGCTTTT 159
|||||||||||||||||||||||||.||.||||||||.|||||.|||||.||.||.|||||||||||.||||||
Sbjct 297 GCAAATATGGACGAATAGTGGAAGTTCTTTTGATGAAGGACCGAGAAACGAATAAGTCAAGAGGATTCGCTTTT 370
Query 160 GTCACCTTTGAAAGCCCAGCAGACGCTAAGGATGCAGCCAGAGACATGAATGGAAAGTCATTAGATGGAAAAGC 233
|||||.|||||||||||||||||.||.||||||||.|||||||||||||||||||||||.||||||||.|||||
Sbjct 371 GTCACTTTTGAAAGCCCAGCAGATGCAAAGGATGCTGCCAGAGACATGAATGGAAAGTCCTTAGATGGGAAAGC 444
Query 234 CATCAAGGTGGAACAAGCCACCAAACCATCATTTGAAAGTGGTAGACGTGGACCGCCTCCACCTCCAAGAAGTA 307
||||||||||||.||||||||||||||||||||||||||||||||||||||||..||.||||||||||||||.|
Sbjct 445 CATCAAGGTGGAGCAAGCCACCAAACCATCATTTGAAAGTGGTAGACGTGGACTACCCCCACCTCCAAGAAGCA 518
Query 308 GAGGCCCTCCAAGAGGTCTTAGAGGTGGAAGAGGAGGAAGTGGAGGAACCAGGGGACCTCCCTCACGGGGAGGA 381
||||||||||.|||||||||.||||.||||||||||||||||||||||||||.|||||.|||||.|||||||||
Sbjct 519 GAGGCCCTCCCAGAGGTCTTCGAGGAGGAAGAGGAGGAAGTGGAGGAACCAGAGGACCCCCCTCCCGGGGAGGA 592
Query 382 CACATGGATGACGGTGGATATTCCATGAATTTTAACATGAGTTCTTCCAGGGGACCACTCCCAGTAAAAAGAGG 455
|||||||||||.|||||.||.|||||||||||||.|||||||||||||||.|||||.||.|||||||||.||||
Sbjct 593 CACATGGATGATGGTGGCTACTCCATGAATTTTACCATGAGTTCTTCCAGAGGACCTCTGCCAGTAAAACGAGG 666
Query 456 ACCACCACCAAGAAGTGGGGGTCCTCCTCCTAAGAGATCTGCACCTTCAGGACCAGTTCGCAGTAGCAGTGGAA 529
||||||||||.|||||||.||||||||||||||.|||||.||||||||.|||||||||||.||.|||||||||.
Sbjct 667 ACCACCACCACGAAGTGGAGGTCCTCCTCCTAAAAGATCAGCACCTTCTGGACCAGTTCGTAGCAGCAGTGGAC 740
Query 530 TGGGAGGAAGAGCTCCTGTATCACGTGGAAGAGATAGTTATGGAGGTCCACCTCGAAGGGAACCGCTGCCCTCT 603
|||||||||||||.|||||.||.||||||||||||.||||.|||||.||.||.||||||||.||.|||||.|||
Sbjct 741 TGGGAGGAAGAGCCCCTGTGTCCCGTGGAAGAGATGGTTACGGAGGCCCGCCACGAAGGGAGCCCCTGCCTTCT 814
Query 604 CGTAGAGATGTTTATTTGTCCCCAAGAGATGATGGGTATTCTACTAAAGACAGCTATTCAAGCAGAGATTACCC 677
||.||||||||||||||||||||.|||||||||||.|||||.||||||||||||||||||||||||||.||.||
Sbjct 815 CGAAGAGATGTTTATTTGTCCCCGAGAGATGATGGATATTCCACTAAAGACAGCTATTCAAGCAGAGAATATCC 888
Query 678 AAGTTCTCGTGATACTAGAGATTATGCACCACCACCACGAGATTATACTTACCGTGATTATGGTCATTCCAGTT 751
|||||||||.|||||..||||||||||||||||||||.||||||||||||||||||||||||||||||||||||
Sbjct 889 AAGTTCTCGAGATACACGAGATTATGCACCACCACCAAGAGATTATACTTACCGTGATTATGGTCATTCCAGTT 962
Query 752 CACGTGATGACTATCCATCAAGAGGATATAGCGATAGAGATGGATATGGTCGTGATCGTGACTATTCAGATCAT 825
||||.||||||||||||||||||||.|||||.|||||||||||.||||||||.|||||.|||||||||||||||
Sbjct 963 CACGAGATGACTATCCATCAAGAGGCTATAGTGATAGAGATGGCTATGGTCGGGATCGGGACTATTCAGATCAT 1036
Query 826 CCAAGTGGAGGTTCCTACAGAGATTCATATGAGAGTTATGGTAACTCACGTAGTGCTCCACCTACACGAGGGCC 899
||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CCAAGTGGAGGTTCCTACAGAGATTCGTATGAGAGTTATGGTAACTCACGTAGTGCTCCACCTACACGAGGGCC 1110
Query 900 CCCGCCATCTTATGGTGGAAGCAGTCGCTATGATGATTACAGCAGCTCACGTGACGGATATGGTGGAAGTCGAG 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 CCCGCCATCTTATGGTGGAAGCAGTCGCTATGATGATTACAGCAGCTCACGTGACGGATATGGTGGAAGTCGAG 1184
Query 974 ACAGTTACTCAAGCAGCCGAAGTGATCTCTACTCAAGTGGTCGTGATCGGGTTGGCAGACAAGAAAGAGGGCTT 1047
|||||||||||||||||||||||||||||||||||||||||||||||||.||.|||||||||||||||||||||
Sbjct 1185 ACAGTTACTCAAGCAGCCGAAGTGATCTCTACTCAAGTGGTCGTGATCGCGTGGGCAGACAAGAAAGAGGGCTT 1258
Query 1048 CCCCCTTCTATGGAAAGGGGGTACCCTCCTCCACGTGATTCCTACAGCAGTTCAAGCCGCGGAGCACCAAGAGG 1121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CCCCCTTCTATGGAAAGGGGGTACCCTCCTCCACGTGATTCCTACAGCAGTTCAAGCCGCGGAGCACCAAGAGG 1332
Query 1122 TGGTGGCCGTGGAGGAAGCCGATCTGATAGAGGGGGAGGCAGAAGCAGATAC---------------------- 1173
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 TGGTGGCCGTGGAGGAAGCCGATCTGATAGAGGGGGAGGCAGAAGCAGATACTAGGAACAAACAAAACTTTTGG 1406
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 1407 ACCAAAAAAATCCCCATTCAAAGCAACAAACAAAAGTGGAAACTTTCTGTCATAAACTACCCAAGGACTACTAA 1480
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 1481 AAGGAAAAATTGTGTTACCTTTTTAAAATTTCCTGTTCCCTTTTAATAATTTTTATGTTCTTGTGAGGGAAAAA 1554
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 1555 GTAAGACGTGTTTAATTTTATTTGCTAGTATGAGCTGCTTTCAACAAGCAAATGGTAGATGTGTGAGCCTTGAC 1628
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 1629 TTGTTCCTAGTGTTGTAATTTTCCAAGTGAAAGTGTCCCTGAAGGCCAGCCACTTCCTGATTTTTTTCCCCAGT 1702
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 1703 AAATGAGGCAAGCAACCCCAAGATCATCCACAAACTTCCAGCCATCTAGATGGCCTCTGGTCTCCACTGAGAGC 1776
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 1777 TGAATCGCCCTGCCTGTGCAGACAAGCTAGCCATTAGAGAGGGTTGGTTGGGTGTGCTACTTTCAGTATTTCAG 1850
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 1851 GGTGTCTTCCAACTGAAATCTCAATCTTCGCAGTATATATATTAAAACCAACGAGCAAACCTGAGCTCCGATGC 1924
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 1925 CTAGGATGTACTGTTTACCCAGAAACCCCCCAAAAAAGCAGATGGATACTGGCCATATTTTGCTTTTTTGACAC 1998
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 1999 TTCCTTGGGAATCTACAAGAACCTCCCTTCCCCCTCCCCGAGTAAGACCTAAGACCATTTAAGTGTGTGTTAAA 2072
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 2073 CAACTACAAAATACTCAATAAAACGTTTGGCCAAAGTCAACCCTGAAGCTGCAAACCGATGCTTGCTCTTACTG 2146
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 2147 TTTCAAATTTTTGCAACTCTGTAGTGTCTCACTTTTAAAGGAACAGCTTGATTGCAAAGGAGAAAATAGATAAG 2220
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 2221 CAATGAAGTTATCTCCAACTTCCTAAAGGCTTATGACTTCTAAAAAGTGAATCTATCAGCATTCCACATCAGAT 2294
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 2295 TTAAAGCACCAAATGCCCGTGAAACAGCAAAGATGGTTGAATCTAATGGTCATACTGTCCTGGAGTGCTGATTG 2368
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 2369 ATTGATTCACAGTAGATAAAGCTGGCAGTAAGGAACAATCAGATGCTCAGAGTTGCTGAAGCAGAGGAACGCTG 2442
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 2443 AGACTAAGCCACAGCAGTTGCTTACCCAGTGCGCATCAGAATTGGTTTGGTACAGGCAATAGTTTGTTTTTTTT 2516
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 2517 TTTTTTTTGTCTTCAAGGGAGGGAGGATGATTAAACCGAATCAGTGCTTGTTAATCCTTAATTAGGGAGTGGCA 2590
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 2591 ATCACTTAAAACTGACCCAATGGAGAGAGGGAGACTAATTGGTAAGTGGAGGTACCTACCCAAGAAGTTCGGGT 2664
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 2665 GACTCTTTGTAGACATTCAGTCGTTCGGGCAAAGTCATAGGGCAACTCTGCAATTTCGAGCTGATGATCACTGA 2738
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 2739 GAGAAGAACATTGAATGAGCTGGGGCTGTAACTCCATGGTGAGTGCTTGCCTAAGCACCAGTGAGGCTAGCATT 2812
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 2813 CAACCCCTGGCAGGACACACAAACATTTCAGTCAGAAAAATTATACCTCACTCATGTCTGACCCATTTGATGAA 2886
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 2887 TTTTGCCTCATCAGTAGGAAACATTATTAGTTGTCTTGTAAAACTAAGAAGGGGAAGAACAGTGCTGGGAAATG 2960
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 2961 AAAGTCAAAACTGGCAACGTTAGGCTAGTTAGGAAAACATATTGGGAACAAAAATAGGTCACTAGGTCACTGTG 3034
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 3035 GTTTTATAAAAGGTACTTTACCCTCAGGGCTCCATCTTGGAAACAAACCATGAAGCTATAACTCTAGTTTACTG 3108
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 3109 CTTTGGAAACTCAGCCAGTAATGTGAACGCAGATAATCTCAACAGAAGCGGGTTGAGTTTTAGAGTCAAAGAAT 3182
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 3183 TTAACTCCACTTGTGAGATTTTTCTTACGAATTTGTTACAGTGCTGTTGAGGGGATTTCAAGCCTTTCGTCCTC 3256
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 3257 TAATCAGGCCCGGAGTAGGTTCTGCTGTCAAGACCTTTAGCTCGTGACATTTTATATGCATTTTTTAGTTTGTC 3330
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 3331 ATGGGCAATATTACACTAAATATGAATGTTAAATTCAAAGTGGGAAGTTGGTAGAAAATTTCAAGAGACTTTTT 3404
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 3405 TGACAAGTGGTAGAATATAGAACTAGCAGGTCTAAAATCTGCAATTAGAAAAAAAAAATTAGCCTTGATTCTTC 3478
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 3479 TGGCTAAACTCTGGTTGTAGAAGAATTTGAATAATACACAAAGTGCTGTGGTTTATTTGGTAGCTGGATGTAGA 3552
Query 1174 -------------------------------------------------------------------------- 1173
Sbjct 3553 ACATTATAGATCATTTATTTATTTATTTATTTATTTTGGAATGTTTTGTATTGAAGCCCAATAAAACTTGAATG 3626
Query 1174 ------ 1173
Sbjct 3627 TGTGTC 3632
