Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_03429
- Subject:
- XR_001743474.2
- Aligned Length:
- 3876
- Identities:
- 806
- Gaps:
- 3067
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CCTCTTTAAAAAGCTGACGATAAGTGGGACTAAGTGAAAATGAATGGGCAGGTGAATAATAAAGTCCTTTGAAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCAAGTAAATGACGCGGCAGATGAAGGGCACGCACGTCTATTGTGCAAATTCATTCAGTGGTTATCTCATAATA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CACTTATCAAGTCCTTATTACCACGAACCTCACCCACCGTGGACAAGAGAAACATAAGCAGGAAAAAAGGAGGA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GGAATAAACACACGCCTGTCCATAATAAAACTCGCTCTTGAAGACTCAGCGGCAGCCCTGCACCGGAGACTGAC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GACTTGCGCGGCTGTGACCTCCGCCCTGCAGCGGACCCTCGACTGCCCTGCACTGCGGCTCTGGAGGCCCCGAC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TCAGTGCATGGGAAAGAAATCCTCACTATCAGAAAACAGAGGGGCAATCTGCTGCTCTCCCTTTCCGGCCAAAC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ACGTCACCCATCAACCGGATACCTACCAAGAGGCTTTCAGAGGAGGCGCCCAAGGTCTCCCAGGCCCGCCCCTC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CCCAATCACGCTCCGCTCAGCCCCCTCAACTTTTGGCCTCCGGGAAGTTCGCAGCGTTCTCACGCTTGGCAGGA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AGTTCCCGCCAAGGCTTCCGGAAAATCCTTTAAAAAGCAACGCTTGCGCTGGGCGGGGCTTGGTGCGCTCTCAC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CCTTATCTCCAAATTCTGGGTGTTGTCGCGAGGGCTGCTGTGTCCGGAACTTCCGGTTCCGGTCAGGGTCCGCG 740
Query 1 --------------ATGCGGTCCCGGGTTCTGTGGGGCGCTGCCCGGTGGCTCTGGCCCCGCCGGGCCGTTGGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ATCTCGGACTAAGGATGCGGTCCCGGGTTCTGTGGGGCGCTGCCCGGTGGCTCTGGCCCCGCCGGGCCGTTGGC 814
Query 61 CCAGCCCGCCGGCCCCTGAGCTCCGGTAGCCCGCCGCTGGAGGAGCTGTTCACCCGGGGCGGGCCCTTGCGGAC 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CCAGCCCGCCGGCCCCTGAGCTCCGGTAGCCCGCCGCTGGAGGAGCTGTTCACCCGGGGCGGGCCCTTGCGGAC 888
Query 135 CTTCCTCGAGCGCCAGGCGGGGTCTGAAGCCCATTTGAAGGTCAGGAGGCCCGAGTTGCTGGCGGTGATCAAAC 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CTTCCTCGAGCGCCAGGCGGGGTCTGAAGCCCATTTGAAGGTCAGGAGGCCCGAGTTGCTGGCGGTGATCAAAC 962
Query 209 TGCTGAACGAGAAGGAGCGGGAGCTGCGGGAGACTGAGCACTTGCTGCACGATGAGAATGAAGATTTAAGGAAA 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TGCTGAACGAGAAGGAGCGGGAGCTGCGGGAGACTGAGCACTTGCTGCACGATGAGAATGAAGATTTAAGGAAA 1036
Query 283 CTTGCAGAGAATGAAATCACTTTGTGTCAAAAAGAAATAACTCAGCTGAAGCATCAG----------------- 339
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CTTGCAGAGAATGAAATCACTTTGTGTCAAAAAGAAATAACTCAGCTGAAGCATCAGGTATGGTATTTCTGCAA 1110
Query 340 -----------------------------ATTA-------------------------------------TCTT 347
|||| |.||
Sbjct 1111 AGAATAAAGCATTTGTGCTATTCTTAGGCATTAAAGTTTATTAAAGGTTTATAAAAACAAGTGACTAGCTTGTT 1184
Query 348 ACTTTT------------GGTT----------------------------------------CCCTCA------ 363
|||.|| |||| |||.||
Sbjct 1185 ACTGTTTAGAATAAACTGGGTTTTTTAAATTTATTTTCTAGATTTATTGAGGTATAAATTGACCCCCAAAATTG 1258
Query 364 -------------------------------------------------------------------------- 363
Sbjct 1259 CATATATTTAAGGTATATGATGTGATGTTTTGATATATGCATACATTTTGAAATGATTATGACTATCAATAAAC 1332
Query 364 -------------------------------------------------------------------------- 363
Sbjct 1333 TGGTTTTTAAAGAACAAACTTCACATGGTCCTGTTTTCATCATACTAAAAGTACTGTAGCGCTCTCACAGAAAG 1406
Query 364 -------------------------------------------------------------------------- 363
Sbjct 1407 ATAAATGTCACAGTGATAGTATTTTCTGGAAAGGCAGCGAAATAGTGGCATATCTTCCCTTTTTTTTTTTTTTT 1480
Query 364 -------------------------------------------------------------------------- 363
Sbjct 1481 TTTTTTAAGAAGACTGGAGGTAGACATGGGGCAGAAGAGGTTATATGAAAGGACTTCAAAAGTTTGTGGAAAAC 1554
Query 364 -------------------------------------------------------------------------- 363
Sbjct 1555 TGGAATTAAAAGATAAAAAAATATATATATAAACTTTAATTTATTGACATAAGTGCCACCAGCTATCAAGTTCA 1628
Query 364 ---------GAAGAAACAGATGAAAATGATTTGATCCTGGAAGTAACTGCAGGAGTTGGAGGTCAGGAGGCAAT 428
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 AGACACTTTGAAGAAACAGATGAAAATGATTTGATCCTGGAAGTAACTGCAGGAGTTGGAGGTCAGGAGGCAAT 1702
Query 429 GTTGTTTACATCAGAGATATTTGATATGTATCAGCAATATGCTGCATTTAAAAGATGGCATTTTGAAACCCTGG 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 GTTGTTTACATCAGAGATATTTGATATGTATCAGCAATATGCTGCATTTAAAAGATGGCATTTTGAAACCCTGG 1776
Query 503 AATATTTTCCAAGTGAACTAGGTGGCCTTAGACATGCATCTGCCAGCATTGGGGGTTCAGAAGCCTATAGGCAC 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 AATATTTTCCAAGTGAACTAGGTGGCCTTAGACATGCATCTGCCAGCATTGGGGGTTCAGAAGCCTATAGGCAC 1850
Query 577 ATGAAATTTGAAGGAGGTGTTCACAGAGTACAAAGAGTGCCAAAGACAGAAAAGCAAGGCCGCGTCCATACTAG 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 ATGAAATTTGAAGGAGGTGTTCACAGAGTACAAAGAGTGCCAAAGACAGAAAAGCAAGGCCGCGTCCATACTAG 1924
Query 651 CACCATGACTGTAGCAATATTACCCCAGCCTACTGAGATTAATCTGGTGATTAATCCGAAAGATTTGAGAATTG 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 CACCATGACTGTAGCAATATTACCCCAGCCTACTGAGATTAATCTGGTGATTAATCCGAAAGATTTGAGAATTG 1998
Query 725 ACACTAAGCGAGCCAGTGGAGCTGGGGGGCAGCATGTAAATACCACGGACAGTGCTGTCCGGATAGTTCATCTT 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 ACACTAAGCGAGCCAGTGGAGCTGGGGGGCAGCATGTAAATACCACGGACAGTGCTGTCCGGATAGTTCATCTT 2072
Query 799 CCAACAGATTGGAAG----------------------------------------------------------- 813
|||||| |||||
Sbjct 2073 CCAACA----GGAAGAAGAAAAAGGATGAGGAGGAAAAGTATTCCTTGATAATAAGTAAAGAAGATTTTTTTAT 2142
Query 814 -------------------------------------------------------------------------- 813
Sbjct 2143 TAAAACTTTTTAATTCTCGTAACACTATTCAGGTGTTGTTTCTGAATGTCAACAAGAGAGATCTCAGCTGAAAA 2216
Query 814 -------------------------------------------------------------------------- 813
Sbjct 2217 ATAAAGAGCTGGCTATGACAAAGTTACGTGCAAAACTGTACAGCATGCATCTAGAAGAAGAAATAAATAAAAGA 2290
Query 814 -------------------------------------------------------------------------- 813
Sbjct 2291 CAGAATGCTAGAAAAATTCAGATTGGAAGTAAAGGAAGATCAGAGAAAATAAGAACATATAATTTTCCACAGAA 2364
Query 814 -------------------------------------------------------------------------- 813
Sbjct 2365 CCGGGTCACAGATCACAGAATAAACAAGACGCTGCATGATCTTGAAACTTTTATGCAAGGAGATTATCTACTGG 2438
Query 814 -------------------------------------------------------------------------- 813
Sbjct 2439 ATGAACTTGTACAGTCATTGAAGGAATACGCCGATTATGAATCTTTAGTAGAAATTATTTCCCAAAAAGTTTAA 2512
Query 814 -------------------------------------------------------------------------- 813
Sbjct 2513 GTTGATTTGTTATTTATAGACTTTCGTAGCTTAGAAAAATTCTACAGTACATCCACATAGGGTGAAAGTACCCT 2586
Query 814 -------------------------------------------------------------------------- 813
Sbjct 2587 TACTCTCTTGAAAAACGTTGAGTTAACACAGTTGGAGGTAATATGCATATTCTGAAGTCATAGATAATTTACAC 2660
Query 814 -------------------------------------------------------------------------- 813
Sbjct 2661 AGATCTCTCTCAATGCATTAGCAAAAATCATACAATATACAGATGGTCCTCGATTTACATTGTGGTTAATTCCC 2734
Query 814 -------------------------------------------------------------------------- 813
Sbjct 2735 AATAAACCCATCATAAGTTAAAAATGCATATAACGTTAGCAACACAGCAGTCTCCTAATTAATGACAGCTTGAC 2808
Query 814 -------------------------------------------------------------------------- 813
Sbjct 2809 TTAACAATTTTCCAACTTTACCATGGTGTGAAAGAGGTATGATTCCTAAGCCCTAAGGAGCTCCTCAGCTTGAA 2882
Query 814 -------------------------------------------------------------------------- 813
Sbjct 2883 ATGGGGCTGCATCCCTATAAACCCATCATAAAGTCAAAAAATCCTAAAACATAAGTTGGTGACCATCTGTAATC 2956
Query 814 -------------------------------------------------------------------------- 813
Sbjct 2957 ATGATGTGGTGGTAAATCTTGGACGCTACCTTACAATAACTAGACAAAGGAAAATCATCCTTTGTCCTGTTCTG 3030
Query 814 -------------------------------------------------------------------------- 813
Sbjct 3031 TGTAAATATTTAATGAATGATCAAAACTTCAGTTTAAATATTATGAAAAACTTTAAACATAAAGTAGTAGAAAT 3104
Query 814 -------------------------------------------------------------------------- 813
Sbjct 3105 AAGACAGTAAATACTGTATCCTAATATCCAGTCAGGATACAGAAACCATACCATTAACTTGAACAGGGATAATT 3178
Query 814 -------------------------------------------------------------------------- 813
Sbjct 3179 TTAATATAAAAACTGTTAACTGATAATGGTATTAACTTTTAAGAGGGATGAAAGAGAGCTATGATGTCCTAGGA 3252
Query 814 -------------------------------------------------------------------------- 813
Sbjct 3253 CTGAGAGTACCCCAGGAAAGAATACCCTTGAAAGGGTCTCCCCTTCCCCATGGTGAAGTCAGGCCTAATGGAGA 3326
Query 814 -------------------------------------------------------------------------- 813
Sbjct 3327 GAGTGGCTACAGCCTACTCAGTGATTGGGAAATTCCCTGTCTTGCCCTGGGCCAGAGCTGGTGTACCGCTGGTG 3400
Query 814 -------------------------------------------------------------------------- 813
Sbjct 3401 GATCAGGTCTTACAAGCAAAGAACCTCACACTCCCAACTGGTAAGCCAGAAGCCTCTTGCTAGGGTGTGAGCAA 3474
Query 814 -------------------------------------------------------------------------- 813
Sbjct 3475 AACTTGGACAGGAACTCTCAGTAGATGTTTGTGTTTGTCAAGATTCTCCAGACAAACTTCCTTAAAAGGATTGG 3548
Query 814 -------------------------------------------------------------------------- 813
Sbjct 3549 CTTGTGTTGTTATTATTAAGTCTAACAAGTCCAAAAGCTGGAGTGTGAGGCAGGAGGCTGGAAACCCAGGAAAG 3622
Query 814 -------------------------------------------------------------------------- 813
Sbjct 3623 CTGATGGTGCAAGGTCCAGTCCAAAGGTATCTGTTGGAGGATTCTCTTGTTCTGGGAAGAGGACGGTCTTTTTT 3696
Query 814 -------------------------------------------------------------------------- 813
Sbjct 3697 TCTCTTCAGACCTTCACCTGACTGGATCAAGCCCACTAACATCGAGGAGGACAGTCTGCATTACTCAGAGTTCA 3770
Query 814 -------------------------------------------------------------------------- 813
Sbjct 3771 CTGATTGATTTAAATGTCAATCTCATATAAAACACCCTCACAGAAACACCTAGAATAATGTTTGACCTTATAAT 3844
Query 814 ---------------------------- 813
Sbjct 3845 TGGAAAATCAGAGCAAAAGTTAAATCTC 3872
