Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_03431
- Subject:
- NR_160661.1
- Aligned Length:
- 3628
- Identities:
- 1282
- Gaps:
- 2216
Alignment
Query 1 ATGAGTGGAGGATCTCAAGTCCACATTTTTTGGGGTGCTCCAATTGCTCCACTGAAAATCACAGTATCAGAAGA 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 CACAGCTTCTTTAATGTCTGTTGCTGACCCCTGGAAAAAAATTCAGCTTTTATACAGTCAACATTCTTTATATC 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 TGAAGGATGAAAAACAGCACAAAAATCTTGAAAACTATAAAGTCCCAGAATCTATTGGTTCTCCAGATCTTAGT 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 GGTCATTTCTTAGCAAACTGTATGAATAGACATGTTCATGTGAAAGATGACTTTGTACGTTCTGTTTCTGAAAC 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 ACAGAATATAGAATCCCAGAAGATTCACTCCTCTAGACTGAGTGATATAACTAGCTCTAATATGCAAATATGTG 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 GATTTAAAAGCACAGTTCCGCATTTCACCGAAGAAGAAAAGTATCAAAAGCTTCTCAGTGAAAATAAAATTAGA 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 GATGAACAGCCTAAACATCAGCCAGATATATGTGGTAAGAACTTTAACACAAATTTGTTTCAGTTGGGCCATAA 518
Sbjct 1 -------------------------------------------------------------------------- 0
Query 519 ATGTGCAGCTGTGTTGGATTTGGTTTGTAGTACTGAAAAAATTAATATAGGGCCTGAAGTGGTACAAAGAGAGT 592
Sbjct 1 -------------------------------------------------------------------------- 0
Query 593 GTGTGCCAACAGAATATCATGAAATACAAAACCAGTGTTTGGGATTATTTTCCTCGAACGCAGTAGATAAGTCA 666
Sbjct 1 -------------------------------------------------------------------------- 0
Query 667 AGGTCTGAAGC-AGC-AGTTAGGAAG--------GTCTCAGACCTTAAAATATCAACTGATACAGAATTTCTCA 730
||| ||| || |||.|| |.|.|.|.|| ||| |||.
Sbjct 1 --------AGCGAGCGAG--AGGCAGCCGCGCCCGCCGCCGCCC------------CTG-----------CTCT 41
Query 731 GTATAATTACCTCCAGCCAGGTTGCTTTTTTAGCTCAAAAGAAA-----------------GATAAAAG--GC- 784
|||| ||| |||.| ||| |||.|.|| ||
Sbjct 42 GTAT-----------GCC-----GCTCT-----CTC--------CCGGCGCGGCCGCCGCCGATCACAGCAGCA 86
Query 785 GGAGTCC--------------TGTAAATAAAGGGAATGTAAACATGGAGACTGAACCAAAGGCAAGTTACGGGG 844
|||| || || |||| |..|| ||| |||||
Sbjct 87 GGAG-CCGCCGCCGCCGCGGTTG------------ATGT---------GGTTG-------GGC------CGGGG 125
Query 845 AGATAAGAATACCTGAAGAG------AATTCGATTCAGCTTGATGGTTTTACAGAAGCATATGAAAGTGGACAA 912
||||.||| || |||.|.|| ||| |||
Sbjct 126 ------------CTGAGGAGGCCGCCAA---GATGCCGC--------------------------AGT---CAA 155
Query 913 AACCAAGCATATTCCCTTGAACTTTTTAGTCCTGTTTGTCCTAAAACAGAAAATAGCCGCATTCACATAAACTC 986
||||| |.|||.|| |||..|| ||.
Sbjct 156 ---------------------------AGTCC--------------CGGAAGAT---CGCGATC-------CTG 178
Query 987 TGATAAAGGTCT-TGAAGAA-----CATACAGGATCTCAAGAACTTTTCAGTTCTGAAGATGAACTGCCACCAA 1054
.|.||..||||| ||..||| |||..|.||| |||| ||| || ||||| ||||
Sbjct 179 GGCTACCGGTCTGTGGGGAAATCCTCATTGACGAT-TCAA----TTT---GT--TGAAG-------GCCA---- 231
Query 1055 ATGAGATACGTATTGAGTTGTGTAGCTCAGGAATACTGTGTTCCCAACTA---AATAC-CTTCCACAAAAGTGC 1124
|.|||| |||.|.||..|.| |||||.| ||.|| |||..|||||..||.
Sbjct 232 ---------------ATTTGT--------GGACTCCTACGAT-CCAACCATAGAAAACACTTTTACAAAGTTGA 281
Query 1125 T---ATTAA------AAGA-----AGCTGTACCTCTGAAGATAAAG-TGGGCCAGTCTGAA-GCTCTATCTAGA 1182
| |.||| |||| |.||.||.|| ||.|||.|.|| .||||.|| .|||| ..|||||||
Sbjct 282 TCACAGTAAATGGACAAGAATATCATCTTTAACT-TGTAGACACAGCCGGGCAAG-ATGAATATTCTATCT--- 350
Query 1183 GTCCTTCAAGTAGCTAAGAAA------ATGAAGTTGATTTCTAATGGAGGAGATTCTGCTGTAGAAATGGATCG 1250
||| ||.|||.| | |.|||.| |||||| ..|.|||||..||||
Sbjct 351 ----TTC------CTCAGACATACTCCA-----TAGATAT-TAATGG-CTATATTCTTGTGTA----------- 396
Query 1251 GAGAAATGTGTCTGAATTTAAGAGTATTAAAAAAACATCATTAATAAAAAACT-----GTGATTCTAAAAG--- 1316
.|||| ||| |||.|||.||||..| |||||| ||||
Sbjct 397 ---------TTCTG---TTA------------------CATCAATCAAAAGTTTTGAAGTGATT---AAAGTTA 437
Query 1317 -CCA--GAAGTATAATTGTTTAGTCATGGTG----------------CTATCTCCATGCCATGT--GAAGGAAA 1369
||| |.| ||||| ||.|..|||||| |||| .|||| |..|||||
Sbjct 438 TCCATGGCA----AATTG-TTGGATATGGTGGGGAAAGTACAAATACCTAT--------TATGTTGGTTGGAAA 498
Query 1370 TAAACATAAAATTCGGACCAAATTCTGGCTCTAAAGTGCCTTTAGCAACAGTTACAGTAATTGATCAATCAGAA 1443
|| |.||| ||||....|.||| ||||.| ||||||.|
Sbjct 499 TA---AGAAA-----GACCTGCATATGG----AAAGGG-----------------------TGATCAGT----- 532
Query 1444 ACTAAGAAGAAGG------TTT------TTCTGTGGAGGACTGCAGCATTTTGGGCATTTACAGTGTTTCTTGG 1505
||.|||||||| ||| .||| .|||.||||||.||||.||.|| .||||...
Sbjct 533 --TATGAAGAAGGGAAAGCTTTGGCAGAATCT----TGGAATGCAGCTTTTTTGGAAT--------CTTCTGCT 592
Query 1506 AGATATAATTTTACTCACAGA-------TGTTGTTATTCATG-AGGACCAATGGATTGGCGAGACAGTACTACA 1571
|.|.|.||| |||| ||.||||.||| | |||| .||||...|||.|||.| |.|
Sbjct 593 AAAGAAAAT--------CAGACTGCTGTTGATGTTTTTC--GAAGGA-----TGATTTTGGAGGCAGAA--AAA 649
Query 1572 ATCAACATTTAGCAGTCAGTTATTAAATCTTGGGAGTTATTCATCTATTCAGCCTGAAGAATATTCCAGTGTAG 1645
||..|| |||.| ||| ||..|.||.||||||||||||
Sbjct 650 ATGGAC-------------------------GGGGG-------------CAG-CTTCACAAGATTCCAGTGTAG 684
Query 1646 TTAGTGAAGTTGTACTTCAAGACTTACTGGCATATGTGTCCTCAAAACATTCCTACCTCAGAGATCTTCCTCCG 1719
|||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 TTAGTGACGTTGTACTTCAAGACTTACTGGCATATGTGTCCTCAAAACATTCCTACCTCAGAGATCTTCCTCCG 758
Query 1720 AGGCAGCCTCAGAGGGTGAACAGTATAGACTTTGTAGAATTGGAGCACCTTCAACCTGATGTATTAGTCCACGC 1793
||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct 759 AGACAGCCTCAGAGGGTGAACAGTATAGACTTTGTAGAATTGGAGCACCTTCAACCTGATGTGTTAGTCCACGC 832
Query 1794 AGTACTAAGAGTTGTTGATTTCACTATACTGACAGAGGCAGTATACAGTTATAGAGGACAGAAGCAGAAAAAAG 1867
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 AGTACTAAGAGTTGTTGATTTC-CTATACTGACAGAGGCAGTATACAGTTATAGAGGACAGAAGCAGAAAAAAG 905
Query 1868 TTATGTTAACAGTGGAACAGGCCCAAGATCAACATTATGCGCTTGTATTATGGGGTCCTGGAGCAGCCTGGTAC 1941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 TTATGTTAACAGTGGAACAGGCCCAAGATCAACATTATGCGCTTGTATTATGGGGTCCTGGAGCAGCCTGGTAC 979
Query 1942 CCTCAACTTCAAAGGAAAAA------------------------------------------------------ 1961
||||||||||||||||||||
Sbjct 980 CCTCAACTTCAAAGGAAAAAAGGTTATATTTGGGAATTTAAATATCTTTTTGTTCAGCGCAATTACACACTAGA 1053
Query 1962 -------------------------------------------------------------------------- 1961
Sbjct 1054 AAACCTAGAATTGCATACAACGCCTTGGTCATCCTGTGAGTGCTTGTTTGATGATGATATAAGGGCAATTACAT 1127
Query 1962 -------------------------------------------------------------------------- 1961
Sbjct 1128 TTAAAGCAAAATTTCAAAAAAGTGCACCCTCCTTTGTGAAGATATCAGACTTAGCAACCCACCTAGAGGATAAG 1201
Query 1962 -----AGGAGTGGTTCTGATTAAAGCCCAGATTTCAGAGCTGGCATTTCCTATTACAGCATCTCAGAAGATAGC 2030
||||||||||||.|||||||||||||||||||||||||||||||||.||||||||.|||||||||||.|
Sbjct 1202 TGTTCAGGAGTGGTTCTAATTAAAGCCCAGATTTCAGAGCTGGCATTTCCTCTTACAGCAGCTCAGAAGATATC 1275
Query 2031 GCTAAATGCTCACAGTTCTCTGAAGAGTATTTTTTCTTCTCTTCCCAACATCGTATATACTGGTTGTGCAAAAT 2104
.|||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||.||||||||||
Sbjct 1276 TCTAAATGCTCACAGTTCTCTGAAGAGTATTTTTTCTTCTCTTCCCAACATCATATATACTGGCTGTGCAAAAT 1349
Query 2105 GTGGATTGGAACTAGAAACAGATGAGAACAGGATCTACAAACAATGTTTTAGCTGCTTGCCATTTACTATGAAG 2178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1350 GTGGATTGGAACTAGAAACAGATGAGAACAGGATCTACAAACAATGTTTTAGCTGCTTGCCATTTACTATGAAG 1423
Query 2179 AAAATATATTATAGGCCAGCGTTAATGACTGCCATTGATGGAAGACATGATGTTTGTATCCGTGTAGAATCAAA 2252
|||||||||||||||||||||||||||||||||.||||||||||||||.||||||..||||.||||||||||||
Sbjct 1424 AAAATATATTATAGGCCAGCGTTAATGACTGCCGTTGATGGAAGACATAATGTTTACATCCATGTAGAATCAAA 1497
Query 2253 GCTGATAGAGAAGATTCTTCTCAACATTTCTGCAGACTGCCTCAACAGAGTGATAGTTCCTTCCTCAGAGATCA 2326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 GCTGATAGAGAAGATTCTTCTCAACATTTCTGCAGACTGCCTCAACAGAGTGATAGTTCCTTCCTCAGAGATCA 1571
Query 2327 CCTATGGGATGGTCGTGGCAGACCTGTTCCACTCCTTGTTGGCAGTCAGCGCAGAACCTTGTGTATTAAAGATT 2400
|||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||
Sbjct 1572 CCTATGGGATGGTTGTGGCAGACCTGTTCCACTCCTTGTTGGCAGTCAGCGCAGAACCTTGTGTATTGAAGATT 1645
Query 2401 CAGAGCCTTTTTGTGTTAGATGAAAACAGCTATCCATTACAACAAGATTTCTCCCTCCTGGATTTTTATCCTGA 2474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1646 CAGAGCCTTTTTGTGTTAGATGAAAACAGCTATCCATTACAACAAGATTTCTCCCTCCTGGATTTTTATCCTGA 1719
Query 2475 CATTGTAAAGCATGGAGCCAATGCCCGTCTC------------------------------------------- 2505
|||.|||||||||||||||||||||||||||
Sbjct 1720 CATGGTAAAGCATGGAGCCAATGCCCGTCTCTGAGGCCAGAGGAAGAAATTGCAGGCATTTCAAGGAAGAAGTA 1793
Query 2506 -------------------------------------------------------------------------- 2505
Sbjct 1794 CTGAAATGATTTGTCTTTTGAAATAAATGAATGACAGGGCTTTTGCTTTGGATTTTTTATGAAATATATTTTAC 1867
Query 2506 -------------------------------------------------------------------------- 2505
Sbjct 1868 AAAGAGAATTGCACTAGATATATAAATTAAAACTTTTTTCTAAGAAAATCCTGTGAGGTTTAAAAAGATTGTTT 1941
Query 2506 -------------------------------------------------------------------------- 2505
Sbjct 1942 TTGTCTTTTGGTTTCTTCCTTTCTTCTGGAGAAATGATCTACCAGTCAAGGCAATATGTAGCAGATCCCTGGGA 2015
Query 2506 -------------------------------------------------------------------------- 2505
Sbjct 2016 ATTAAAGGTTTGCCCATTTGTTCACTGTATTTAGTCCCTGCTACATTCCAGGCATCGTACTAAGTATGGGGAAC 2089
Query 2506 -------------------------------------------------------------------------- 2505
Sbjct 2090 CACAGAGAAGACACTCCTTCAGAAACTGCTGCAGTGCTTTCGCTTATCCCTACCTAAAAAACCGTCAATGTGAA 2163
Query 2506 -------------------------------------------------------------------------- 2505
Sbjct 2164 ATCATTTCCTTGATTATAACTATAATGATAATGGATTAGTTTATATAAACCTATGTTTAGACAAGTTCAAGACA 2237
Query 2506 -------------------------------------------------------------------------- 2505
Sbjct 2238 AGCGTGTCTTTCTATAAAAAGTATTGAAAGTGAAGGAAATGAGATCATGTTTCAATTTATTAAAGCAGGGAAGA 2311
Query 2506 -------------------------------------------------------------------------- 2505
Sbjct 2312 GCGTTCTGTGGTTAGTTCGTGTCTAGGATTTGAGTGCCTTACTGAATGTATTTACCAGCAAACATGTAGCAATC 2385
Query 2506 -------------------------------------------------------------------------- 2505
Sbjct 2386 TGTTCTCTCATTGTGATTGTGGAAGAAGCTCATGTAAAATGATAGTCATTAATGAGGAAGTATGGCGTGGTACT 2459
Query 2506 -------------------------------------------------------------------------- 2505
Sbjct 2460 TATTCTGTAAGTTCAGAGTATGCTGAGTGTTAATAGATTGTCATATTGCCTGAAAATAAATTCATGATGACATG 2533
Query 2506 -- 2505
Sbjct 2534 AA 2535
