Nucleotide Global Alignment

Description

Query:
ccsbBroad304_03449
Subject:
XM_011245909.2
Aligned Length:
1340
Identities:
976
Gaps:
280

Alignment

Query    1  ATGCTGGCGTCTCAAGGAGTTCTCCTGCATCCTTATGGCGTGCCTATG-ATTGTACCG-------GCAGCTCCT  66
                                                         ||| |||||   |       ||||||   
Sbjct    1  ---------------------------------------------ATGAATTGT---GAAAGAGAGCAGCT---  23

Query   67  TACCTTCCTGGACTGATTCAGGGTAATCAGGAAGCAGCCGCTGCCCCTGACACAATGGCTCAGCCTTACGCTTC  140
                      ||       .|||||||||||||||||||||.||||||||||||||||||||||||||.||.||
Sbjct   24  ----------GA-------GGGGTAATCAGGAAGCAGCCGCCGCCCCTGACACAATGGCTCAGCCTTATGCCTC  80

Query  141  GGCCCAGTTTGCTCCCCCGCAGAACGGTATCCCCGCGGAATACACGGCCCCTCATCCCCACCCCGCGCCAGAGT  214
            .||.|||||.||.||.||.|||||.||.|||||.||.||||||||||||||||||||.||.|||||||||||||
Sbjct   81  AGCGCAGTTCGCACCACCCCAGAATGGCATCCCTGCAGAATACACGGCCCCTCATCCTCATCCCGCGCCAGAGT  154

Query  215  ACACAGGCCAGACCACGGTTCCCGAGCACACATTAAACCTGTACCCTCCCGCCCAGACGCACTCCGAGCAGAGC  288
            ||||.|||||||||||.||.||.||.|||||||||||||||||.|||||..|.|||||||||||.|||||||| 
Sbjct  155  ACACCGGCCAGACCACTGTCCCTGACCACACATTAAACCTGTATCCTCCTACACAGACGCACTCGGAGCAGAG-  227

Query  289  CCGGCGGACACGAGCGCTCAGACCGTCTCTGGCACCGCCACACAGACAGATGACGCAGCACCGACGGATGGCCA  362
              .||.|||||.||.||.|||||||||||.|||||||||||||||||||||||.|||||.|||||.||.|||||
Sbjct  228  --TGCTGACACCAGTGCGCAGACCGTCTCCGGCACCGCCACACAGACAGATGATGCAGCCCCGACCGACGGCCA  299

Query  363  GCCCCAGACACAACCTTCTGAAAACACGGAAAACAAGTCTCAGCCCAAGCGGCTGCATGTCTCCAATATCCCCT  436
            |||||||||||||||||||||||||||.||||.||||||.||||||||||||||||||||.|||||.|||||.|
Sbjct  300  GCCCCAGACACAACCTTCTGAAAACACAGAAAGCAAGTCCCAGCCCAAGCGGCTGCATGTGTCCAACATCCCTT  373

Query  437  TCAGGTTCCGGGATCCGGACCTCAGACAAATGTTTGGTCAATTTGGTAAAATCTTAGATGTTGAAATTATTTTT  510
            ||.|||||||||||||.||||||.||||||||||||||||||||||||||||.|||||||||||||||||||||
Sbjct  374  TCCGGTTCCGGGATCCAGACCTCCGACAAATGTTTGGTCAATTTGGTAAAATATTAGATGTTGAAATTATTTTT  447

Query  511  AATGAGCGAGGCTCAAAGGGATTTGGTTTCGTAACTTTCGAAAATAGTGCCGATGCGGACAGGGCGAGGGAGAA  584
            ||||||||||||||.|||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||
Sbjct  448  AATGAGCGAGGCTCCAAGGGATTTGGTTTCGTAACTTTCGAAAATAGTGCGGATGCGGACAGGGCGAGGGAGAA  521

Query  585  ATTACACGGCACCGTGGTAGAGGGCCGTAAAATCGAGGTAAATAATGCCACAGCACGTGTAATGACAAATAAAA  658
            |||.|||||.|||||||||||||||||||||||||||||.||||||||.||||||||.||.|||||||||||.|
Sbjct  522  ATTGCACGGTACCGTGGTAGAGGGCCGTAAAATCGAGGTTAATAATGCGACAGCACGCGTGATGACAAATAAGA  595

Query  659  AGACCGTCAACCCTTATACAAATGGCTGGAAATTGAATCCAGTTGTGGGTGCAGTCTACAGTCCCGAATTCTAT  732
            ||||.||||||||.||.||.|||                                                   
Sbjct  596  AGACTGTCAACCCCTACACCAAT---------------------------------------------------  618

Query  733  GCAGGCACGGTCCTGTTGTGCCAGGCCAACCAGGAGGGATCTTCCATGTACAGTGCCCCCAGTTCACTTGTATA  806
               ||||||||.|||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||
Sbjct  619  ---GGCACGGTGCTGTTGTGCCAGGCCAACCAGGAGGGATCTTCCATGTACAGTGGCCCCAGTTCACTTGTATA  689

Query  807  TACTTCTGCAATGCCAGGCTTCCCGTATCCAGCAGCCACCGCCGCGGCCGCCTACCGAGGGGCGCACCTGCGAG  880
            |||||||||||||||.||||||||.|||||.||.|||||.||.||.||.||.|||||||||||.|||||.||||
Sbjct  690  TACTTCTGCAATGCCTGGCTTCCCATATCCGGCCGCCACTGCTGCAGCTGCATACCGAGGGGCTCACCTTCGAG  763

Query  881  GCCGCGGTCGCACCGTGTACAACACCTTCAGGGCCGCGGCGCCCCCGCCCCCGATCCCGGCCTACGGCGGAGTA  954
            ||||.|||||||||||||||||||||||||||||.||.||||||||||||||.|||||||||||.|||||||||
Sbjct  764  GCCGTGGTCGCACCGTGTACAACACCTTCAGGGCTGCAGCGCCCCCGCCCCCAATCCCGGCCTATGGCGGAGTA  837

Query  955  GTGTATCAAGAGCCTGTGTATGGCAATAAATTGCTGCAGGGTGGTTATGCTGCATACCGCTACGCCCAGCCTAC  1028
            ||||||||||||||.||||||||||||||||||||.|||||||||||||||||.||||||||.||||||||.||
Sbjct  838  GTGTATCAAGAGCCAGTGTATGGCAATAAATTGCTACAGGGTGGTTATGCTGCGTACCGCTATGCCCAGCCCAC  911

Query 1029  CCCTGCCACTGCCGCTGCCTACAGTGACAGAAATCAGTTCGTCTTCGTTGCAGCAGATGAAATTTCTTGTAACA  1102
            ||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||
Sbjct  912  CCCTGCCACTGCCGCTGCCTACAGTGACAGAAATCAGTTCGTCTTCGTTGCAACAGATGAAATTTCTTGTAACA  985

Query 1103  CCTCTGCAGTTACGGACGAGTTTATGCTGCCGACCCCTACCACCACGCACTTGCTCCAGCCCCCACCTACGGCG  1176
            ||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||
Sbjct  986  CCTCTGCAGTTACGGACGAGTTTATGCTGCCGACCCCTACCACCACACACTTGCTCCAGCCCCCACCTACGGCG  1059

Query 1177  TTGGTGCCA-----------------------------------------------------------------  1185
            |||||||||                                                                 
Sbjct 1060  TTGGTGCCATGCCCCAAGGTTCCAGCCCCAGCACAGACTTCAGAGGAGCTAAGCTGCAGACTTCCAGGCCTCTG  1133

Query 1186  --------------------------------------------------------------------------  1185
                                                                                      
Sbjct 1134  CTGTCAGGCAGCTGAGCATCTGCCTGCCTCTCCTCCCCTTTTACAATTCATGTTTAAAGTCATAGTCGCCCAGG  1207

Query 1186  --------  1185
                    
Sbjct 1208  AGAGAAAG  1215

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