Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_03473
- Subject:
- XR_001737250.1
- Aligned Length:
- 2698
- Identities:
- 1338
- Gaps:
- 1360
Alignment
Query 1 --------------ATGGCGGACCGTGGCGGCGTGGGTGAAGCCGCAGCTGTTGGAGCGTCTCCTGCATCTGTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCGATAGCGGCAAGATGGCGGACCGTGGCGGCGTGGGTGAAGCCGCAGCTGTTGGAGCGTCTCCTGCATCTGTC 74
Query 61 CCTGGCCTAAACCCGACGCTAGGCTGGAGGGAGCGACTGCGGGCCGGGCTGGCGGGGACTGGGGCCTCGTTGTG 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 CCTGGCCTAAACCCGACGCTAGGCTGGAGGGAGCGACTGCGGGCCGGGCTGGCGGGGACTGGGGCCTCGTTGTG 148
Query 135 GTTCGTGGCGGGGCTGGGGCTGCTTTACGCCCTGAGGATCCCTTTGAGGCTGTGTGAGAATTTGGCAGCGGTGA 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GTTCGTGGCGGGGCTGGGGCTGCTTTACGCCCTGAGGATCCCTTTGAGGCTGTGTGAGAATTTGGCAGCGGTGA 222
Query 209 CTGTATTTTTAAATTCATTGACACCCAAATTCTATGTGGCACTTACAGGGACCTCTTCATTGATATCAGGACTA 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CTGTATTTTTAAATTCATTGACACCCAAATTCTATGTGGCACTTACAGGGACCTCTTCATTGATATCAGGACTA 296
Query 283 ATATTTATATTTGAATGGTGGTACTTCCATAAGCATGGCACATCTTTTATTGAGCAAGTATCTGTAAGCCATTT 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ATATTTATATTTGAATGGTGGTACTTCCATAAGCATGGCACATCTTTTATTGAGCAAGTATCTGTAAGCCATTT 370
Query 357 GCAACCACTGATGGGAGGAACAGAGAGCAGCATTTCAGAACCAGGTTCTCCTTCGAGGAACAGAGAAAATGAAA 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GCAACCACTGATGGGAGGAACAGAGAGCAGCATTTCAGAACCAGGTTCTCCTTCGAGGAACAGAGAAAATGAAA 444
Query 431 CCAGCAGACAGAATTTGTCAGAATGTAAGGTATGGAGAAACCCTCTAAATCTTTTCAGAGGAGCAGAATATAGG 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CCAGCAGACAGAATTTGTCAGAATGTAAGGTATGGAGAAACCCTCTAAATCTTTTCAGAGGAGCAGAATATAGG 518
Query 505 AGATACACTTGGGTGACTGGTAAAGAGCCACTTACATACTATGACATGAACCTGTCAGCTCAGGACCATCAGAC 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 AGATACACTTGGGTGACTGGTAAAGAGCCACTTACATACTATGACATGAACCTGTCAGCTCAGGACCATCAGAC 592
Query 579 CTTTTTCACCTGTGACACAGATTTTTTACGTCCTTCAGACACAGTTATGCAGAAGGCTTGGAGGGAAAGAAATC 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CTTTTTCACCTGTGACACAGATTTTTTACGTCCTTCAGACACAGTTATGCAGAAGGCTTGGAGGGAAAGAAATC 666
Query 653 CTCCAGCTCGAATCAAAGCAGCCTATCAAGCTTTAGAATTAAACAATGACTGTGCCACTGCATATGTTCTACTG 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CTCCAGCTCGAATCAAAGCAGCCTATCAAGCTTTAGAATTAAACAATGACTGTGCCACTGCATATGTTCTACTG 740
Query 727 GCTGAGGAAGAAGCAACAACTATTGTAGATGCTGAAAGGTTATTTAAACAGGCACTCAAGGCAGGAGAAACAAT 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GCTGAGGAAGAAGCAACAACTATTGTAGATGCTGAAAGGTTATTTAAACAGGCACTCAAGGCAGGAGAAACAAT 814
Query 801 TTATAGGCAGTCACAGCAGTGCCAGCACCAAAGTCCTCAGCATGAAGCTCAACTGAGGAGAGATACCAATGTAC 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TTATAGGCAGTCACAGCAGTGCCAGCACCAAAGTCCTCAGCATGAAGCTCAACTGAGGAGAGATACCAATGTAC 888
Query 875 TGGTATATATTAAAAGAAGATTGGCAATGTGTGCAAGAAAATTAGGAAGAATAAGAGAAGCAGTAAAAATAATG 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TGGTATATATTAAAAGAAGATTGGCAATGTGTGCAAGAAAATTAGGAAGAATAAGAGAAGCAGTAAAAATAATG 962
Query 949 AGAGATTTGATGAAAGAATTTCCTCCTCTTACCATGTTGAACATCCATGAAAATCTCTTAGAATCACTTTTAGA 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AGAGATTTGATGAAAGAATTTCCTCCTCTTACCATGTTGAACATCCATGAAAATCTCTTAGAATCACTTTTAGA 1036
Query 1023 ATTACAGGCCTATCCAGATGTTCAGGCAGTCCTAGCAAAATATGAT---------------------------- 1068
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 ATTACAGGCCTATCCAGATGTTCAGGCAGTCCTAGCAAAATATGATGAGTCTCGTACTGTCACCCAGGTTGGAG 1110
Query 1069 -------------------------------------------------------------------------- 1068
Sbjct 1111 TGCACTGGCACAATCTCGGCTCACTGCAACCTCGGCCTTCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTG 1184
Query 1069 -------------------------------------------------------------------------- 1068
Sbjct 1185 AGTAGCTGGGATTACAGGCACCTGCCATCACACCCGGCTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCAC 1258
Query 1069 -------------------------------------------------------------------------- 1068
Sbjct 1259 TATGTTGGCCAGGTTGGTCTCGAACTCCTGACCTCGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTA 1332
Query 1069 -------------------------------------------------------------------------- 1068
Sbjct 1333 CAGGCATGAGCCACCACGCCCGTCCATAAGCAGGTTATTGTAGACATTGGTTGAACGCATTTCACCGTTGTGCA 1406
Query 1069 -------------------------------------------------------------------------- 1068
Sbjct 1407 GACGGCTTTCATAGACATAATTTCATCTCGGTCAGAAAATATCATTATTTTGAGAGGTGAAAACTGAGGTCAAA 1480
Query 1069 -------------------------------------------------------------------------- 1068
Sbjct 1481 CAAGTTGCTACTAGCTCAAAGATGCTTAGCTGGTAAATAGTAAGATAAAGATTCAGATTCAGCTTTTTCAACTT 1554
Query 1069 -------------------------------------------------------------------------- 1068
Sbjct 1555 CATATACGGGTTTTTCCTACTATATTATAGATTTTTCAACATCACGTCCAGGTTTTTCCTATATAACTATTGAA 1628
Query 1069 -------------------------------------------------------------------------- 1068
Sbjct 1629 TTTGCATTGCATTGTGAATTATTCTTTTTTTTGTTTTGTTTTGTTTTGTTTTTTTTGGAGACGGAGTTTCACTC 1702
Query 1069 -------------------------------------------------------------------------- 1068
Sbjct 1703 TTGTTGCCCAGGCTGGAGCGCAATGGCGCAATCTTGGCTCACTGCAACCTCCGCCTCCTAGGTTCAAGCGATTC 1776
Query 1069 -------------------------------------------------------------------------- 1068
Sbjct 1777 TCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGCGCCACCATGCCTGGCAAATTTTTGTATTTTTAA 1850
Query 1069 -------------------------------------------------------------------------- 1068
Sbjct 1851 TAGAGACGGGGTTTCTCCATTTTGGTCAGGCCGGTCTTGAACTCCTGACCTCATGATCCACCCGCCTCAGCCTC 1924
Query 1069 -------------------------------------------------------------------------- 1068
Sbjct 1925 CCTAAGTGCTGGGATTATAGGCATGAGCCACCATGCCTGGCCGTGAATTATTCTTATTAAAAAATTGTCTCAAT 1998
Query 1069 -------------------------------------------GATATAAGCCTTCCAAAGTCAGCAGCAATCT 1099
|||||||||||||||||||||||||||||||
Sbjct 1999 ACCTTTTTTGTAATTCCTACCTAAATTGAAAATTATCGTTACAGATATAAGCCTTCCAAAGTCAGCAGCAATCT 2072
Query 1100 GTTACACAGCAGCACTGTTGAAGACAAGGACTGTTTCAGAAAAATTCTCTCCAGAAACAGCCTCCAGAAGAGGA 1173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 GTTACACAGCAGCACTGTTGAAGACAAGGACTGTTTCAGAAAAATTCTCTCCAGAAACAGCCTCCAGAAGAGGA 2146
Query 1174 TTAAGCACAGCAGAAATTAATGCCGTGGAAGCAATTCATAGAGCTGTGGAATTTAATCCTCATGTTCCAAAATA 1247
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 TTAAGCACAGCAGAAATTAATGCCGTGGAAGCAATTCATAGAGCTGTGGAATTTAATCCTCATGTTCCAAA--- 2217
Query 1248 TTTATTAGAGATGAAAAGTTTAATTTTACCTCCAGAACACATTCTGAAACGGGGTGATAGTGAAGCAATTGCCT 1321
Sbjct 2218 -------------------------------------------------------------------------- 2217
Query 1322 ATGCTTTCTTTCATCTTCAGCACTGGAAACGAATAGAAGGTGCTCTTAATCTGTTACAGTGTACATGGGAAGGC 1395
Sbjct 2218 -------------------------------------------------------------------------- 2217
Query 1396 ACTTTTAGAATGATTCCATACCCGTTAGAGAAAGGACATCTATTTTACCCTTATCCCAGCTGCACAGAGACGGC 1469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2218 ACTTTTAGAATGATTCCATACCCGTTAGAGAAAGGACATCTATTTTACCCTTATCCCAGCTGCACAGAGACGGC 2291
Query 1470 TGATAGAGAGCTATTACCTACCTTTCATCATGTTTCTGTTTACCCAAAAAAGGAGCTTCCTTTGTTCATCCATT 1543
||||||||||||||||||||
Sbjct 2292 TGATAGAGAGCTATTACCTA------------------------------------------------------ 2311
Query 1544 TCACAGCAGGATTTTGCTCTTCTACAGCAATGATAGCCATTCTCACTCACCAGTTTCCTGAAATCATGGGTATT 1617
Sbjct 2312 -------------------------------------------------------------------------- 2311
Query 1618 TTTGCTAAAGCTGTGCTGGGACTCTGGTGCCCCCAACCCTGGGCATCCTCAGGCTTTGAGGAGAATACACAGGA 1691
Sbjct 2312 -------------------------------------------------------------------------- 2311
Query 1692 TTTGAAGTCAGAAGACCTAGGTTTGAGTTCTGGC 1725
Sbjct 2312 ---------------------------------- 2311
