Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_03477
- Subject:
- NR_131896.1
- Aligned Length:
- 3427
- Identities:
- 1496
- Gaps:
- 1719
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GAGCATGCGCAAATCAGCCCGGCGGGACACAAGTGTCATGGCGCTCTCCATCTGAAGTCTGTGCAGTTTCCTGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CAGGGGCTTGTGGTTTTTTTCCTCTCAGTTCGGACAGATTCATCTTTCAAGAGGACTTGAGACCAATTTCAGAA 148
Query 1 -------ATGCCTTCTGCATCCTGTGATACACTACTGGATGACATCGAAGATATCGTGTCTCAGGAAGATTCAA 67
|||||||||||.||.||||||..|||.|||||||||||.|||||||||.|.||.|||||||||||||
Sbjct 149 AATCAAGATGCCTTCTGCGTCTTGTGATGTACTGCTGGATGACATAGAAGATATCATATCACAGGAAGATTCAA 222
Query 68 AACCACAAGATAGGCATTTTGTAAGAAAGGATGTTGTCCCGAAGGTACGAAGGCGAAATACCCAAAAATATTTG 141
|.|||||.||.||.||.||...|||||||.||||..|.||.||.|||||||||||.||||||||||||||||||
Sbjct 223 AGCCACAGGACAGACAGTTCTCAAGAAAGCATGTGTTTCCTAAAGTACGAAGGCGGAATACCCAAAAATATTTG 296
Query 142 CAAGAGGAAGAAAACAGTCCACCAAGTGACAGCACTATTCCAGGCATACAGAAAATTTGGATACGAACATGGGG 215
||| |||||...|||.||||||||||||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct 297 CAA---GAAGAGCCCAGGCCACCAAGTGACAGCACTATTCCAGGCATACAGAAAATTTGGATCCGAACATGGGG 367
Query 216 TTGTTCTCATAATAATTCAGATGGAGAATATATGGCTGGACAGCTAGCTGCTTATGGCTATAAAATTACAGAAA 289
.||.||.|||||||||||.|||||||||||.||||||||||||||.|||||.||||||||||||||||||||.|
Sbjct 368 CTGCTCACATAATAATTCGGATGGAGAATACATGGCTGGACAGCTTGCTGCCTATGGCTATAAAATTACAGAGA 441
Query 290 ATGCATCCGATGCAGATTTATGGCTCCTGAACAGTTGCACTGTAAAAAACCCAGCTGAAGACCACTTTAGAAAC 363
|||||||.|||||||||.|.|||||||||||||||||.|||||.|||||.||||||||||||||||||||||||
Sbjct 442 ATGCATCAGATGCAGATCTGTGGCTCCTGAACAGTTGTACTGTGAAAAATCCAGCTGAAGACCACTTTAGAAAC 515
Query 364 TCAATTAAAAAAGCTCAAGAGGAGAACAAGAAAATCGTACTGGCTGGATGCGTTCCTCAAGCCCAGCCTCGCCA 437
|||||.||||||||||||||.|||||.||||||.|.||.||.|||||.||.|||||.||||||||||||||.||
Sbjct 516 TCAATCAAAAAAGCTCAAGAAGAGAATAAGAAAGTTGTCCTCGCTGGCTGTGTTCCCCAAGCCCAGCCTCGTCA 589
Query 438 GGACTACCTTAAGGGACTGAGTATCATTGGGGTTCAGCAGATAGATCGTGTGGTAGAAGTTGTGGAGGAGACAA 511
|||||||||.||.||||||||.|||||.|||||||||||||||||||||||||||||||||||||||||.||||
Sbjct 590 GGACTACCTCAAAGGACTGAGCATCATCGGGGTTCAGCAGATAGATCGTGTGGTAGAAGTTGTGGAGGAAACAA 663
Query 512 TTAAAGGTCACTCTGTGAGACTGCTGGGTCAGAAAAAGGATAATGGAAGGCGGCTTGGG-GGAGCACGATTGGA 584
|.|||||||||||.|||||.||.|||||.|||||.||.||.||.||.|.|| ||||||| |||||.|||.||||
Sbjct 664 TAAAAGGTCACTCAGTGAGGCTCCTGGGCCAGAAGAAAGACAACGGGAAGC-GCTTGGGTGGAGCTCGACTGGA 736
Query 585 TTTGCCGAAGATTAGGAAGAATCCACTGATAGAAATCATTTCCATCAATACCGGGTGTCTCAATGCTTGTACCT 658
||||||||||||.||.||||||||.|||||||||||||||||||||||.||.||||||||||||||||||||||
Sbjct 737 TTTGCCGAAGATCAGAAAGAATCCGCTGATAGAAATCATTTCCATCAACACGGGGTGTCTCAATGCTTGTACCT 810
Query 659 ACTGCAAAACTAAACACGCCAGAGGAAATTTGGCCAGTTATCCAATTGATGAACTAGTAGATAGAGCCAAACAA 732
||||||||||||||||||||||||||||..|||||||.|||||.||||||||.||.||.||.||||||||.|||
Sbjct 811 ACTGCAAAACTAAACACGCCAGAGGAAACCTGGCCAGCTATCCCATTGATGAGCTTGTGGAGAGAGCCAAGCAA 884
Query 733 TCTTTTCAAGAGGGTGTTTGTGAGATATGGTTGACCAGTGAAGACACGGGGGCTTATGGCAGAGATATTGGCAC 806
||.|||||||||||||||||||||||||||.|||||||.||.|||||.|||||.|||||||||||.||||||||
Sbjct 885 TCCTTTCAAGAGGGTGTTTGTGAGATATGGCTGACCAGCGAGGACACCGGGGCCTATGGCAGAGACATTGGCAC 958
Query 807 CAATCTCCCCACACTCCTGTGGAAACTGGTTGAAGTGATTCCTGAGGGAGCAATGCTGAGGCTTGGCATGACAA 880
..||||||||||||||||||||||..||||.||||||||||||||||||||.|||||||||||.||||||||||
Sbjct 959 AGATCTCCCCACACTCCTGTGGAAGTTGGTGGAAGTGATTCCTGAGGGAGCCATGCTGAGGCTGGGCATGACAA 1032
Query 881 ATCCGCCCTATATTTTAGAGCATCTGGAGGAAATGGCAAAAATCCTTAATCACCCCAGAGTCTACGCTTTTCTG 954
||||.||.|||||||||||.||||||||||||||||||||||||||.||.||.|||||||||||||||||.||.
Sbjct 1033 ATCCACCATATATTTTAGAACATCTGGAGGAAATGGCAAAAATCCTCAACCATCCCAGAGTCTACGCTTTCCTC 1106
Query 955 CACATACCAGTCCAGTCTGCCTCCGACAGCGTACTCATGGAAATGAAAAGAGAATACTGTGTGGCTGACTTCAA 1028
|||||.|||||.|||||.|||||.|||||.||.||||||||.|||||.|||||.|||||.|||||.||||||||
Sbjct 1107 CACATCCCAGTGCAGTCCGCCTCTGACAGTGTGCTCATGGACATGAAGAGAGAGTACTGCGTGGCCGACTTCAA 1180
Query 1029 AAGAGTAGTGGATTTTCTGAAAGAGAAAGTTCCTGGAATAACTATTGCTACAGATATTATCTGTGGTTTTCCTG 1102
||||||.|||||||||||.||.|||||.||||||||||||||.||||||||.||||||||||||||||||||||
Sbjct 1181 AAGAGTCGTGGATTTTCTCAAGGAGAAGGTTCCTGGAATAACGATTGCTACGGATATTATCTGTGGTTTTCCTG 1254
Query 1103 GAGAAACAGATCAGGATTTTCAAGAAACAGTGAAACTTGTTGAAGAGTACAAATTCCCAAGCCTGTTTATTAAC 1176
|||||||.|||||||||||||||||||||||||||||||||||||||||||||||.||||||||.||.||.|||
Sbjct 1255 GAGAAACCGATCAGGATTTTCAAGAAACAGTGAAACTTGTTGAAGAGTACAAATTTCCAAGCCTCTTCATCAAC 1328
Query 1177 CAATTTTACCCAAGACCAGGAACTCCTGCTGCAAAAATGGAACAAGTTCCAGCACAAGTGAAAAAGCAAAGGAC 1250
||.||.||.||||||||.||||||||||||||||||...||.||.|||||||||||.||||||||.||||||||
Sbjct 1329 CAGTTCTATCCAAGACCCGGAACTCCTGCTGCAAAAGCCGAGCAGGTTCCAGCACATGTGAAAAAACAAAGGAC 1402
Query 1251 AAAAGATCTTTCTCGGGTGTTTCATTCTTACAGTCCATATGATCACAAGATTGGTGAAAGACAACAAGTGTTAG 1324
|||||||||||||||||||||||||||.||||.||||||.||||||||||||||.|||||||||||||||.|||
Sbjct 1403 AAAAGATCTTTCTCGGGTGTTTCATTCCTACAATCCATACGATCACAAGATTGGCGAAAGACAACAAGTGCTAG 1476
Query 1325 TAACAGAAGAATCTTTTGATTCCAAGTTTTATGTTGCACACAATCAATTCTATGAGCAGGTTTTAGTGCCAAAG 1398
|.||.|||||.||||||||.|||||||||||||||||.||.||.|.|||||||||||||||||||||.||||||
Sbjct 1477 TCACTGAAGAGTCTTTTGACTCCAAGTTTTATGTTGCTCATAACCGATTCTATGAGCAGGTTTTAGTACCAAAG 1550
Query 1399 AACCCTGCGTTCATGGGGAAGATGGTTGAAGTGGACATCTATGAATCAGGCAAACATTTTATGAAAGGGCAGCC 1472
||||||||.|||||||||||.|||||||||||.|||||.||.||||||||.||.||.|||.|||||||.|||||
Sbjct 1551 AACCCTGCATTCATGGGGAAAATGGTTGAAGTCGACATTTACGAATCAGGAAAGCACTTTTTGAAAGGACAGCC 1624
Query 1473 AGTATCTGATGCCAAAGTGTACACGCCCTCCATCAGCAAACCGCTAGCAAAGGGAGAAGTCTCGGGTTTGACAA 1546
||||||.||..|||.||||||.||.||.|||||||||||.||.||.||.||||||||||||||.||||||||||
Sbjct 1625 AGTATCAGAAACCAGAGTGTATACACCATCCATCAGCAAGCCACTGGCCAAGGGAGAAGTCTCAGGTTTGACAA 1698
Query 1547 AGG---------ACTT-------CAGAAATGGG------------CTTGG----------------------GA 1570
||| |.|| ||.||| ||| .|||| |.
Sbjct 1699 AGGCTCTGGATTATTTATGAAGGCACAAA-GGGAGAGAGAGACACATTGGACAAAATTCAAATGTGATATATGT 1771
Query 1571 ACCAGC--------------TGAGTT---------------CAGGAT---CCCACA-CCTCT---GCTGCATCT 1608
||..|| |||.|| ||||.| .||||| ||.|| ||| |||||
Sbjct 1772 ACACGCCCCTTCTTTGGCTGTGATTTGTGCAAAATCACATCCAGGCTATAGCCACAGCCCCTGGGGCT-CATCT 1844
Query 1609 CAGTGTGACTCAGCGAGTTCCAGAATGGTGCTG--------------------------CCCATGC-------- 1648
|.|| .||.|| ||.|.|||| |||| .||||||
Sbjct 1845 CTGT---TCTGAG---GTACAAGAA----GCTGGCAACGCGCTTTTCACACAGGACAAAGCCATGCTGGCTGTT 1908
Query 1649 ------CAAGGCTACATCA---AGAC---TGTGCGCTGAGGATGT------------CCGTGGGCTTGGC---- 1694
.|||||..||||| |||| ||||| ||| .|.||.|..||||
Sbjct 1909 GATTCTAAAGGCCCCATCATCCAGACTCTTGTGC--------TGTTATTGGAAAAAAACATGAGACTGGCCAAA 1974
Query 1695 -TCTGCT-GGGTCTTCTTTT------------TGCTTTTTTTG--TCAAGGTCTATAAT--------------- 1737
.|.||| .||||...||.| |.||||..||| |||| ||||.
Sbjct 1975 AGCAGCTCAGGTCACATTATCAGGGATAGAAGTTCTTTGATTGACTCAA-----ATAAAACAGCCTGCACTTGA 2043
Query 1738 -------------------------------------------------------------------------- 1737
Sbjct 2044 CATCATAAAAAGAAGTGTTTCTTCATGAAATATGAACTTCAACCAAACTGTGTGTTGCATCTCAGCCAGAGCCT 2117
Query 1738 -------------------------------------------------------------------------- 1737
Sbjct 2118 ATGTCCTCCACTGAAGAAGTTATTAGAGAAAAAGGCCAACCTTCCATTTGGACGGTCACCAATCAGATTAGCAA 2191
Query 1738 -------------------------------------------------------------------------- 1737
Sbjct 2192 TTCCTCTTAGAAGGAAAAACAGCAGAGGCAGTTATGTGCGGAGACTTTGACTGAACTCGGGCCTAGGATGTGAC 2265
Query 1738 -------------------------------------------------------------------------- 1737
Sbjct 2266 AGGTCCTGTCAGTTGTCACTTCACTGGGTCAAGGCCTGATCAGAACCTGTGCTCTGTCTAATCCAGGGCTTCAG 2339
Query 1738 -------------------------------------------------------------------------- 1737
Sbjct 2340 GTTGGTATTTCTTCCCTGAATGACCTCTCTGTAGTTTGTGGTTTTGCTCAGTGAAGGTTTTTCCAGAAGCCAAT 2413
Query 1738 -------------------------------------------------------------------------- 1737
Sbjct 2414 GTGAGAAGCATGGGTTCTAAGAGCTTCTTTGATGAGAACCTTAAAATGATCTGGCATCCAAAATGTTTGGAAAA 2487
Query 1738 -------------------------------------------------------------------------- 1737
Sbjct 2488 CTTATCAGACTTTAATCCCTACTTGGGGATTCATAACAAACACAGAAGGCCTTCTTAAGCTCGGGTCATGTGGA 2561
Query 1738 -------------------------------------------------------------------------- 1737
Sbjct 2562 GTTTCTCAAACACATGTGACTCCAGAATGTCTTTTTTCTTGCCAGCTACACGGAGAGAGACGTGTTCTGGAAAA 2635
Query 1738 -------------------------------------------------------------------------- 1737
Sbjct 2636 CACTGACACAACAGCAAACATTGGATCTAAGAGGCTGTGTCTGTGTCTCCACTCACTTTCTGATTGATCCTATC 2709
Query 1738 -------------------------------------------------------------------------- 1737
Sbjct 2710 AGGAAGATATCAATGAGTCTCCATTATCTACATATAGAATGACTCTACACTACACTGGTCCGATCTGTCTGTCA 2783
Query 1738 -------------------------------------------------------------------------- 1737
Sbjct 2784 TGCAGTGAGAAATAAATGCCAATGCCAACAGCTCTAAGATAATGACAGGGGCCAGTGAGAGGGCACAGCACATA 2857
Query 1738 -------------------------------------------------------------------------- 1737
Sbjct 2858 AACTCTTGCCACACAATCCTGATGACTTGAGCTTGACCCCTGGGACCTAAAGGACACTGACTCTTTAGAGCTGT 2931
Query 1738 -------------------------------------------------------------------------- 1737
Sbjct 2932 CCTCTGCCATCCACACATGTGTGTCTATTCTCCAATCACACATCATACACACTATAATAATTAGTAATAATAAG 3005
Query 1738 -------------------------------------------------------------------------- 1737
Sbjct 3006 CAAAGTAATGGGCTATTAAAATATTAATTTATATATGTATATGCCATAGATACAAAGAGCCAGCTTACTACAGC 3079
Query 1738 -------------------------------------------------------------------------- 1737
Sbjct 3080 CTTTTCAGTAAAGCTGGTCCATGGCTTTGTTTTATAAATAAAGTTTTATTAGAACACAGCCATGCTCGTTTATT 3153
Query 1738 -------------------------------------------------------------------------- 1737
Sbjct 3154 TACACATCATCTATGCCTAAGGATGGGCTGCAGTGGCAGAGCTGAACAATTGAAGCAGATGAACAATTCCTCCC 3227
Query 1738 -------------------------------------------------------------------------- 1737
Sbjct 3228 AGGAAAGTGAAAGGCAAAGGCAGTTGCAACTGGCAAGGAACAAAATGTGCTTTTTCCTGTGTGGTTTGTAGAGA 3301
Query 1738 -------------------------------------------------------------------------- 1737
Sbjct 3302 CCCCCCAAAGTGTTTGCTGTTTGGCTGTTCACTGGAAAACAGAAAGAAAAACAAAAATGTGCTGACCCCTGACT 3375
Query 1738 ----------------------- 1737
Sbjct 3376 TGTAATAAAGGATAATATATAGT 3398
