Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_03477
- Subject:
- XR_001743496.2
- Aligned Length:
- 4185
- Identities:
- 1737
- Gaps:
- 2448
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGTTAAAAGGGGATTTGCCAGCTGGGATGGGGGAATTGGGAGGCAGATGGGGCTTCCAGGAGCGAGGATAGGGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGTTGGCCTCAGGTGCCGCTCTCCAGTTAGGAGTATTTTAGGCACCTCGTTCCTTATTGTCAGGTTTAACTTCA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTTGTTCTCCCACTTTATACCTTAGTGAATTTGTAGATGTGACAAGGCTTTCGCAGTTATATAGCTTTCCCAGA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TCAGTATGTTAAGAATTTAAGCAGAAGTTATTGAGAAAAGCAGGTGTCTTGCTTTTTCACTTTTCGTTCTTCTT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGCTCATAAAACCTTTTTCTGAATCTCGGGACGACAGTTATCTTTCGGATGGAACGTGATCTGGATGTCTATCT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ACCTTATTGACTTAATCCTGTTTTGTAGTGGTTGGTTACTCGCACTATGCAGACGTGTTGCGGTGCTGAATACA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ACATTTATTACTAAAGCCAGACACTGGATCACCGTCACGGCAGATGTCAGCACACCTGTTGTAATCAACTCATC 518
Query 1 -------------------------------------------------ATGCCTTCTGCATCCTGTGATACAC 25
|||||||||||||||||||||||||
Sbjct 519 TTTCAAGAGGACTTTAGACTAATTGCAGATAATTAAGGTGGTAGAGAATATGCCTTCTGCATCCTGTGATACAC 592
Query 26 TACTGGATGACATCGAAGATATCGTGTCTCAGGAAGATTCAAAACCACAAGATAGGCATTTTGTAAGAAAGGAT 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TACTGGATGACATCGAAGATATCGTGTCTCAGGAAGATTCAAAACCACAAGATAGGCATTTTGTAAGAAAGGAT 666
Query 100 GTTGTCCCGAAGGTACGAAGGCGAAATACCCAAAAATATTTGCAAGAGGAAGAAAACAGTCCACCAAGTGACAG 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GTTGTCCCGAAGGTACGAAGGCGAAATACCCAAAAATATTTGCAAGAGGAAGAAAACAGTCCACCAAGTGACAG 740
Query 174 CACTATTCCAGGCATACAGAAAATTTGGATACGAACATGGGGTTGTTCTCATAATAATTCAGATGGAGAATATA 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CACTATTCCAGGCATACAGAAAATTTGGATACGAACATGGGGTTGTTCTCATAATAATTCAGATGGAGAATATA 814
Query 248 TGGCTGGACAGCTAGCTGCTTATGGCTATAAAATTACAGAAAATGCATCCGATGCAGATTTATGGCTCCTGAAC 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TGGCTGGACAGCTAGCTGCTTATGGCTATAAAATTACAGAAAATGCATCCGATGCAGATTTATGGCTCCTGAAC 888
Query 322 AGTTGCACTGTAAAAAACCCAGCTGAAGACCACTTTAGAAACTCAATTAAAAAAGCTCAAGAGGAGAACAAGAA 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AGTTGCACTGTAAAAAACCCAGCTGAAGACCACTTTAGAAACTCAATTAAAAAAGCTCAAGAGGAGAACAAGAA 962
Query 396 AATCGTACTGGCTGGATGCGTTCCTCAAGCCCAGCCTCGCCAGGACTACCTTAAGGGACTGAGTATCATTGGGG 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AATCGTACTGGCTGGATGCGTTCCTCAAGCCCAGCCTCGCCAGGACTACCTTAAGGGACTGAGTATCATTGGGG 1036
Query 470 TTCAGCAGATAGATCGTGTGGTAGAAGTTGTGGAGGAGACAATTAAAGGTCACTCTGTGAGACTGCTGGGTCAG 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TTCAGCAGATAGATCGTGTGGTAGAAGTTGTGGAGGAGACAATTAAAGGTCACTCTGTGAGACTGCTGGGTCAG 1110
Query 544 AAAAAGGATAATGGAAGGCGGCTTGGGGGAGCACGATTGGATTTGCCGAAGATTAGGAAGAATCCACTGATAGA 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 AAAAAGGATAATGGAAGGCGGCTTGGGGGAGCACGATTGGATTTGCCGAAGATTAGGAAGAATCCACTGATAGA 1184
Query 618 AATCATTTCCATCAATACCGGGTGTCTCAATGCTTGTACCTACTGCAAAACTAAACACGCCAGAGGAAATTTGG 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 AATCATTTCCATCAATACCGGGTGTCTCAATGCTTGTACCTACTGCAAAACTAAACACGCCAGAGGAAATTTGG 1258
Query 692 CCAGTTATCCAATTGATGAACTAGTAGATAGAGCCAAACAATCTTTTCAAGAGGGTGTTTGTGAGATATGGTTG 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CCAGTTATCCAATTGATGAACTAGTAGATAGAGCCAAACAATCTTTTCAAGAGGGTGTTTGTGAGATATGGTTG 1332
Query 766 ACCAGTGAAGACACGGGGGCTTATGGCAGAGATATTGGCACCAATCTCCCCACACTCCTGTGGAAACTGGTTGA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 ACCAGTGAAGACACGGGGGCTTATGGCAGAGATATTGGCACCAATCTCCCCACACTCCTGTGGAAACTGGTTGA 1406
Query 840 AGTGATTCCTGAGGGAGCAATGCTGAGGCTTGGCATGACAAATCCGCCCTATATTTTAGAGCATCTGGAGGAAA 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 AGTGATTCCTGAGGGAGCAATGCTGAGGCTTGGCATGACAAATCCGCCCTATATTTTAGAGCATCTGGAGGAAA 1480
Query 914 TGGCAAAAATCCTTAATCACCCCAGAGTCTACGCTTTTCTGCACATACCAGTCCAGTCTGCCTCCGACAGCGTA 987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 TGGCAAAAATCCTTAATCACCCCAGAGTCTACGCTTTTCTGCACATACCAGTCCAGTCTGCCTCCGACAGCGTA 1554
Query 988 CTCATGGAAATGAAAAGAGAATACTGTGTGGCTGACTTCAAAAGAGTAGTGGATTTTCTGAAAGAGAAAGTTCC 1061
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CTCATGGAAATGAAAAGAGAATACTGTGTGGCTGACTTCAAAAGAGTAGTGGATTTTCTGAAAGAGAAAGTTCC 1628
Query 1062 TGGAATAACTATTGCTACAGATATTATCTGTGGTTTTCCTGGAGAAACAGATCAGGATTTTCAAGAAACAGTGA 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 TGGAATAACTATTGCTACAGATATTATCTGTGGTTTTCCTGGAGAAACAGATCAGGATTTTCAAGAAACAGTGA 1702
Query 1136 AACTTGTTGAAGAGTACAAATTCCCAAGCCTGTTTATTAACCAATTTTACCCAAGACCAGGAACTCCTGCTGCA 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 AACTTGTTGAAGAGTACAAATTCCCAAGCCTGTTTATTAACCAATTTTACCCAAGACCAGGAACTCCTGCTGCA 1776
Query 1210 AAAATGGAACAAGTTCCAGCACAAGTGAAAAAGCAAAGGACAAAAGATCTTTCTCGGGTGTTTCATTCTTACAG 1283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 AAAATGGAACAAGTTCCAGCACAAGTGAAAAAGCAAAGGACAAAAGATCTTTCTCGGGTGTTTCATTCTTACAG 1850
Query 1284 TCCATATGATCACAAGATTGGTGAAAGACAACAAGTGTTAGTAACAGAAGAATCTTTTGATTCCAAGTTTTATG 1357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 TCCATATGATCACAAGATTGGTGAAAGACAACAAGTGTTAGTAACAGAAGAATCTTTTGATTCCAAGTTTTATG 1924
Query 1358 TTGCACACAATCAATTCTATGAGC-------------------------------------------------- 1381
||||||||||||||||||||||||
Sbjct 1925 TTGCACACAATCAATTCTATGAGCAGATAAGAGGTGAAAATGTTTGCTATGGATCATGGCTGGAATTAGAGCTT 1998
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 1999 GAGAAGATGCTGAAGGCCAAGGTGGACAAGTCGGATGAGGGATGGGCAGAGGAAGCAGGCTGCCTGTGTCAGAA 2072
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 2073 GGCAGGAAAGCAGGAGCTGAAGAGGCCCCCAGCATTGACATTCCCCAGGGAATCATCTCAGACTGGGCAGTGCG 2146
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 2147 TCCCCAGGAAACAGGGGAGCTTTTCAAAGCCCAGACTAAACGTGCTCTGTTCAGTACCGGTGGAGACTGCAGTT 2220
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 2221 GAGGAAGGGCTCCCAGCACTCCATGTCTGGCCTGCATCGCTTCCCCATTTCCCCATCTCATTAATATACCCCAG 2294
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 2295 AGGGCCATTTTCCTATTCAGGCCAACCTTCTGCTCAGCCCTGGGGAGGAGCTTGATTGCATTTTGGTTGCCTCT 2368
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 2369 TCTCTCTCCTTTCTCTTGCCATCTGGGTTTTGCCTCAGCAGGGAACTTTTTTCCCTTCATTTTAAAGGCAGTGG 2442
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 2443 CATGCCTCGTTAGCTGCTTCCTCCAATTTAAAGCAGTCGGGCTTTTTCCAATTATTAAAACTGGAGGAGGGGAA 2516
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 2517 AACACTGAGCCCTTCATTCAGATCAAGGCAGCAGATCAAGGAGGGTTATTTTTCCCCAGAATAGTACCAAATCT 2590
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 2591 CCCAGGGTTAGTTTGGTCTAGAGATTTTCTTATTTTATAAAAACTGATTTAAATGGGCTTTTTATATCCTAACA 2664
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 2665 CTAAAGCTCTTTTAGTTCTTTTTGCCTGCCCTAAGTAATTCACCACCCAGGTGACCTTTTTCTTCTACTTTGAT 2738
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 2739 GAAGCAGTGTACTCAGTGGTCATAAAAATCAAACTCAGACCAAGATTCAATTTTGCCTTTCAGAGAGATTGGCT 2812
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 2813 GTGGAACTCCTGGCTCTCATCTGACTTTTCTGTCTCTATAACTAAGCATATCAAAGATTTTCTAGGAATTATTT 2886
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 2887 TTCTAAATAAGATGAGTTCCAGAGATGAAGATTGTATCTAGATATCCAAGTATTACTGGATTAGAACTGGTCTA 2960
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 2961 TTTATTTTGGATTCTAACTTGAAAAGACTGGCAAGTCGCTGCAGTGCTAAAATAGAAGTGTAAGGGAGACATCA 3034
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 3035 CACACACAAGCTACCTGTGGGTCCCAAAGGAAGGGAAACGTTTGCTTGAAGTAAACAAGTACTTTTATCAGGAA 3108
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 3109 TCTCTAGTGGAAAGAGACCACCTGACAGTTTCCTGTGAACAAGCCAAAGTACCCTTCAGAGGACTGGTTCTAGA 3182
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 3183 TGGAGGTAGATTCCCAGGACTGACAAACACATGCCTTTTCTAACAGAGCAAGGGAAATGAACGGCAGCTGTTAG 3256
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 3257 TTTCAGGAGTCATTTAGCTCCAAACAGCAGTGTACAGTGTTATTGGAAGGTTCTTTTAAATGTACCTCCTTCTC 3330
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 3331 CCTCAAAACACAGCACACACATGCACGGACACAAACACGCAGGCCTGTTTGAAGTGTCTTTTCAAACCATTACT 3404
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 3405 CTGACAGCTCACTTGGAAAGTATTAAAAGTATAAGGCTTTCATCAGTATTGTCTCGGTTTTCCTCATTGCATGG 3478
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 3479 AATAGCCAAAAGCAAGATATCAAAGGCCTGTCCAGAAGTGGCTGGCTGATTGCTGGGGGATTTCCCAGGTCTGC 3552
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 3553 CTTCCACGTGCCTCAGGACATCAGGCACATCCTGCACTGGAAAAGCACTGCCCAGGGGCCCAGGAGCCCCTCCC 3626
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 3627 AGGAGTGCCTTTCCTTCCTGCAGGCTCTGCAGACCCTTGAGCAGCTAGAAGATAGAGTCCACTTTGTAGGGGAT 3700
Query 1382 --------------------------------------------------AGGTTTTAGTGCCAAAGAACCCTG 1405
||||||||||||||||||||||||
Sbjct 3701 CCCAGAACAGAAAAATGACATTGAGGGACAATGAGGAAACCTGGATAATTAGGTTTTAGTGCCAAAGAACCCTG 3774
Query 1406 CGTTCATGGGGAAGATGGTTGAAGTGGACATCTATGAATCAGGCAAACATTTTATGAAAGGGCAGCCAGTATCT 1479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3775 CGTTCATGGGGAAGATGGTTGAAGTGGACATCTATGAATCAGGCAAACATTTTATGAAAGGGCAGCCAGTATCT 3848
Query 1480 GATGCCAAAGTGTACACGCCCTCCATCAGCAAACCGCTAGCAAAGGGAGAAGTCTCGGGTTTGACAAAGGACTT 1553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3849 GATGCCAAAGTGTACACGCCCTCCATCAGCAAACCGCTAGCAAAGGGAGAAGTCTCGGGTTTGACAAAGGACTT 3922
Query 1554 CAGAAATGGGCTTGGGAACCAGCTGAGTTCAGGATCCCACACCTCTGCTGCATCTCAGTGTGACTCAGCGAGTT 1627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3923 CAGAAATGGGCTTGGGAACCAGCTGAGTTCAGGATCCCACACCTCTGCTGCATCTCAGTGTGACTCAGCGAGTT 3996
Query 1628 CCAGAATGGTGCTGCCCATGCCAAGGCTACATCAAGACTGTGCGCTGAGGATGTCCGTGGGCTTGGCTCTGCTG 1701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3997 CCAGAATGGTGCTGCCCATGCCAAGGCTACATCAAGACTGTGCGCTGAGGATGTCCGTGGGCTTGGCTCTGCTG 4070
Query 1702 GGTCTTCTTTTTGCTTTTTTTGTCAAGGTCTATAAT-------------------------------------- 1737
||||||||||||||||||||||||||||||||||||
Sbjct 4071 GGTCTTCTTTTTGCTTTTTTTGTCAAGGTCTATAATTAGAATACAACTAATGGAAACATCTATAAAGAAGAATA 4144
Query 1738 ----------------------------------------- 1737
Sbjct 4145 CATTTCTAATTAAAATCTTCAATGAACAGGAAAGCGACATC 4185
