Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_03477
- Subject:
- XR_001743498.2
- Aligned Length:
- 5569
- Identities:
- 1570
- Gaps:
- 3884
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TGTGATCTCCCCCGCCTTGTCCCAAAGTGCTAGGATTACAGGTGTGAGCCACCACACCGGCCTTGATCATCATT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ATCAATGCAATTATTTGTGACGTACTTCCTAGCCCTCCAGAGCTTTTAAAAGAAATGGAATCTGACTTTAACTT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTAGTGTTTGAAAGTTTTAAAAAGTCCCTTGCCATCTTGCTTTTGAGAAACGTCATTAGCGCTGTATGTTTTGA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TAGGAGTACAGTTGTTTAATTATGGTAGTAACTGTAATTAACTTCTGTCTAGCTCTTTGTGGCTTACCATTTTC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ATATACATTAATTCATTTCTACTCCACAGGAAGCCTGGCATTACTGATTATGCAGCCAAGCAGCAGTGTACTAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AATTTGAAACCTAGTCCCCTTGTTCCACATACCCTCCTTTCTATTCTGTGAAGCTGTTAATATTGAACAGACGG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AAATGAGAAAGTGAGGCCCATTTATTATTTTCTTTTCTGATACCTGTTGTTTAAGATCACTGCTCACTTTTTTT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CCATGTTCCCTTTAGATCTTCTCTTATATATTTTGTTCCTTCATGTGTCTTGTTTCCTCTTTAATCTTTTTAAA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CTTTTTTTTCTCTTTTATTTGCTGTTTTATTTTGTGCCAACATAAAACATTCTTTTGTAAGGAGTTAATAAAGA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TACGCTTAATTTTTTATAGAAAATTCTGAGTATACTGTTTGAGTCATACCATGCTATAAAGGTGCTTAAATTGG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GAAATGAGTGAGTGAACGTATTCCCTAACTATAAGCAACTGTTAAAAAAGCCAGCCAAAAAAAAAGCAAATGAA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AGATTCTATAGAGAAAATTCTTGTGTATGTGTTGTAAGAATAAGTGTTGAAAGTTTTAATGTAAAACACACTTT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GTATATAGAGTTTTTACTGTCAAATGGTTAGGTCAAAAAAATCCTGCGATGTTTTTTAAGGATATGTCTTAAAT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CTTGTATTCTCAATCCTAGTTATGTATTTAGGCCACATGAGTTTTGCAGCTGTAACCAGAAGTATTTTAATATT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CATAACTTTCAATCTTTAACAGACCATGCCCAACACTGTCATTTTTAAAAATTAAATTTTAAGACGATGTTTGA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TTAGTCTTTTGACTAGAACTAAGAATCTCAAGCCCACATAATTTCTACTTCATACATTATTTTTAGGAGCATTT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TCATTTTTGAAGGCGTGGTCTTTCACCATGGGGCCCCTTCCTGCCAAGTCTTAATAAATCTTTTAAGTGAAATC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CAGTTAAAGTGATAGGCTTTTAACTAGCTTGGTTTTAAGAAGTGGAAAATCAGTCAAAAGCAGGAAATCTAGGA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AAAGGTACTGTGAAATAGATATAATCATGTATATAATTTGTATCCTGCTTGCTCTGCCTCCCAGACTTCAGTGT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CACCTCTCCCTGAAGCCTTTCCTGATTTTCCCTGGGAGAGTTGACCACTCCCTTGTGGTGTCTCTCTGTACTTA 1480
Query 1 -------ATGCC-------TTCTG---CATCCTGTGATACACT----------ACTGGATGACATCGAAGATAT 47
.|||| .|||| |||||| |.|||| ||.|..||.|.||...||.|.
Sbjct 1481 GAAACATCTGCCAGATCATCTCTGACACATCCT----TCCACTTATTTGTTCAACAGTCTGCCTTCCTCGAGAC 1550
Query 48 CGT--GTC----TCAGGAAG-ATTCAAA-----ACCACAAGATAG----------------------------- 80
|.| ||| |.|||.|| |.||||| ..|.||||||||
Sbjct 1551 CTTAAGTCCCTTTAAGGCAGAAGTCAAAGTAGTGGCTCAAGATAGAGAAGGTTTTAAATATTAAAAAGTAATCT 1624
Query 81 ------------GCATTTTGTAAG--------------AAAGGA-----TGTT---GTCCCGAAGGTACGAAGG 120
.||||||.|||| .|.||| |||| ||...|.|.||||
Sbjct 1625 TTCATACATGCTTCATTTTCTAAGCTCATCTATGGTATTATGGAACTTTTGTTTCAGTTATGCATGTAC----- 1693
Query 121 CGA--AATAC-----CCAAAAATATTTGCAAGAGGAAGA-------------------------AAAC--AGTC 160
| ||||| |..|.||||| ||.|.|.|.| |||| |.|.
Sbjct 1694 --ATTAATACAGTGACTTACAATAT----AAAATGTACATCCTCTTTGTTTTAACTACATTTTTAAACTTATTT 1761
Query 161 CA------CCA---------------AGTGACAGCACTATTC----------CAGGCATACAGA----AAATTT 199
|| ||| |||||.|.||||..|| .|||..|| ||| .|||||
Sbjct 1762 CACTCTTGCCATTTCTATAGAAAGGCAGTGATAACACTTATCTCAACGGGTTGAGGACTA-AGAGAGTGAATTT 1834
Query 200 GGATACGAA--------CATGGGGTTGTTCTCAT------------------------------AATAATTCAG 235
||..|.|| ||.|||..|..|||||| .||.||||||
Sbjct 1835 -GAAGCAAAGTGAGCTCCAGGGGCCTCCTCTCATTTAGATGTATTTATGCTGCCTACAGTACAAGATTATTCAG 1907
Query 236 -------ATGGA---GAATATATGGCTGGACAGCTAGCT-------GCTTATGGCTATAAAATTACA------- 285
.|||| ||| || |..||.||||.||.| ||.|.| |.|||.| ||||
Sbjct 1908 TTCTTGATTGGAAGTGAA-AT---GAAGGTCAGCAAGGTCAGAGAGGCATTT---TTTAAGA-TACATAGATGG 1973
Query 286 GAAAA---------------TGCATCCGAT--------GCAGA-TTTA---TGGCTCCTGAACAGTTGCACTGT 332
||||| |||.|||.|| .||.| |||| ||||| || |||||.|.|
Sbjct 1974 GAAAATTCCCCAGCCTTTACTGCTTCCCATCTCTTCTGTCACACTTTATGGTGGCT--TG---AGTTGAATT-- 2040
Query 333 AAAAAACCCAGC---TGAAGAC----------CACTT----TAGAAACTCAATTAAA----------------- 372
||| .|.|||| ||.|| |.||||.|.|.|..||
Sbjct 2041 ---------AGCGCGAGGAGACTTGACATGTTCATTTGTGATTGAAAGTGAGTGCAACATAGTTTGGATGTTTG 2105
Query 373 --------AAAGCTCA-----AGAGGAGAAC-----------AAGAAAATCGTACTGG---CTGG--------- 410
|||.|||| |.|.|.||.| ||| ||| ||||
Sbjct 2106 TCTCTTCTAAATCTCATTTTGAAATGTGATCCTCGCTGTTGGAAG----------TGGGGCCTGGTGGGAGGTA 2169
Query 411 --------ATGCG------TTCCTCAAGCCCAGCCTCG-CCAGGACT--ACCTTAAGGGA--------CTGAG- 458
|||.| |.|||||.|....||.|.| .|.|.||| .||.| ||||| .||||
Sbjct 2170 TTTGGGTCATGGGGGCGGTTCCCTCATGAATGGCTTGGTGCTGTACTGGCCCAT-AGGGAATTCTCATGTGAGT 2242
Query 459 ---------------------TATC-------------------ATTG-------------------------G 467
|||| .||| |
Sbjct 2243 TGGTTGTTTAAAAGTGTGTGTTATCTGTCCCCTTCGTGTCTTTTCTTGTTCCTACTCTCCCCGTGTGACAGGTG 2316
Query 468 GG-------------TTCAGCAG---ATAGA----TCGTGTGG------TAGAAGTTGTGGAG-----GAGACA 510
|| |||.||.| .|.|| ||.||.|| ||||||.||.|.|| |..||.
Sbjct 2317 GGCACCCCCTTTGCCTTCTGCCGTGACTGGAGGCTTCCTGAGGCCTTACTAGAAGCTGAGCAGATGCTGTTACC 2390
Query 511 AT--------TAAAG-----------GTCACTCTGTGAGACTGCTGGGTCAGAAAAAGGATAATGGAAGGCGGC 565
|| ||.|| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2391 ATACTTCCCGTACAGCCTGCAGAACCGTCACTCTGTGAGACTGCTGGGTCAGAAAAAGGATAATGGAAGGCGGC 2464
Query 566 TTGGGGGAGCACGATTGGATTTGCCGAAGATTAGGAAGAATCCACTGATAGAAATCATTTCCATCAATACCGGG 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2465 TTGGGGGAGCACGATTGGATTTGCCGAAGATTAGGAAGAATCCACTGATAGAAATCATTTCCATCAATACCGGG 2538
Query 640 TGTCTCAATGCTTGTACCTACTGCAAAACTAAACACGCCAGAGGAAATTTGGCCAGTTATCCAATTGATGAACT 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2539 TGTCTCAATGCTTGTACCTACTGCAAAACTAAACACGCCAGAGGAAATTTGGCCAGTTATCCAATTGATGAACT 2612
Query 714 AGTAGATAGAGCCAAACAATCTTTTCAAGAGGGTGTTTGTGAGATATGGTTGACCAGTGAAGACACGGGGGCTT 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2613 AGTAGATAGAGCCAAACAATCTTTTCAAGAGGGTGTTTGTGAGATATGGTTGACCAGTGAAGACACGGGGGCTT 2686
Query 788 ATGGCAGAGATATTGGCACCAATCTCCCCACACTCCTGTGGAAACTGGTTGAAGTGATTCCTGAGGGAGCAATG 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2687 ATGGCAGAGATATTGGCACCAATCTCCCCACACTCCTGTGGAAACTGGTTGAAGTGATTCCTGAGGGAGCAATG 2760
Query 862 CTGAGGCTTGGCATGACAAATCCGCCCTATATTTTAGAGCATCTGGAGGAAATGGCAAAAATCCTTAATCACCC 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2761 CTGAGGCTTGGCATGACAAATCCGCCCTATATTTTAGAGCATCTGGAGGAAATGGCAAAAATCCTTAATCACCC 2834
Query 936 CAGAGTCTACGCTTTTCTGCACATACCAGTCCAGTCTGCCTCCGACAGCGTACTCATGGAAATGAAAAGAGAAT 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2835 CAGAGTCTACGCTTTTCTGCACATACCAGTCCAGTCTGCCTCCGACAGCGTACTCATGGAAATGAAAAGAGAAT 2908
Query 1010 ACTGTGTGGCTGACTTCAAAAGAGTAGTGGATTTTCTGAAAGAGAAAGTTCCTGGAATAACTATTGCTACAGAT 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2909 ACTGTGTGGCTGACTTCAAAAGAGTAGTGGATTTTCTGAAAGAGAAAGTTCCTGGAATAACTATTGCTACAGAT 2982
Query 1084 ATTATCTGTGGTTTTCCTGGAGAAACAGATCAGGATTTTCAAGAAACAGTGAAACTTGTTGAAGAGTACAAATT 1157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2983 ATTATCTGTGGTTTTCCTGGAGAAACAGATCAGGATTTTCAAGAAACAGTGAAACTTGTTGAAGAGTACAAATT 3056
Query 1158 CCCAAGCCTGTTTATTAACCAATTTTACCCAAGACCAGGAACTCCTGCTGCAAAAATGGAACAAGTTCCAGCAC 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3057 CCCAAGCCTGTTTATTAACCAATTTTACCCAAGACCAGGAACTCCTGCTGCAAAAATGGAACAAGTTCCAGCAC 3130
Query 1232 AAGTGAAAAAGCAAAGGACAAAAGATCTTTCTCGGGTGTTTCATTCTTACAGTCCATATGATCACAAGATTGGT 1305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3131 AAGTGAAAAAGCAAAGGACAAAAGATCTTTCTCGGGTGTTTCATTCTTACAGTCCATATGATCACAAGATTGGT 3204
Query 1306 GAAAGACAACAAGTGTTAGTAACAGAAGAATCTTTTGATTCCAAGTTTTATGTTGCACACAATCAATTCTATGA 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3205 GAAAGACAACAAGTGTTAGTAACAGAAGAATCTTTTGATTCCAAGTTTTATGTTGCACACAATCAATTCTATGA 3278
Query 1380 GC------------------------------------------------------------------------ 1381
||
Sbjct 3279 GCAGATAAGAGGTGAAAATGTTTGCTATGGATCATGGCTGGAATTAGAGCTTGAGAAGATGCTGAAGGCCAAGG 3352
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 3353 TGGACAAGTCGGATGAGGGATGGGCAGAGGAAGCAGGCTGCCTGTGTCAGAAGGCAGGAAAGCAGGAGCTGAAG 3426
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 3427 AGGCCCCCAGCATTGACATTCCCCAGGGAATCATCTCAGACTGGGCAGTGCGTCCCCAGGAAACAGGGGAGCTT 3500
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 3501 TTCAAAGCCCAGACTAAACGTGCTCTGTTCAGTACCGGTGGAGACTGCAGTTGAGGAAGGGCTCCCAGCACTCC 3574
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 3575 ATGTCTGGCCTGCATCGCTTCCCCATTTCCCCATCTCATTAATATACCCCAGAGGGCCATTTTCCTATTCAGGC 3648
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 3649 CAACCTTCTGCTCAGCCCTGGGGAGGAGCTTGATTGCATTTTGGTTGCCTCTTCTCTCTCCTTTCTCTTGCCAT 3722
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 3723 CTGGGTTTTGCCTCAGCAGGGAACTTTTTTCCCTTCATTTTAAAGGCAGTGGCATGCCTCGTTAGCTGCTTCCT 3796
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 3797 CCAATTTAAAGCAGTCGGGCTTTTTCCAATTATTAAAACTGGAGGAGGGGAAAACACTGAGCCCTTCATTCAGA 3870
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 3871 TCAAGGCAGCAGATCAAGGAGGGTTATTTTTCCCCAGAATAGTACCAAATCTCCCAGGGTTAGTTTGGTCTAGA 3944
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 3945 GATTTTCTTATTTTATAAAAACTGATTTAAATGGGCTTTTTATATCCTAACACTAAAGCTCTTTTAGTTCTTTT 4018
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 4019 TGCCTGCCCTAAGTAATTCACCACCCAGGTGACCTTTTTCTTCTACTTTGATGAAGCAGTGTACTCAGTGGTCA 4092
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 4093 TAAAAATCAAACTCAGACCAAGATTCAATTTTGCCTTTCAGAGAGATTGGCTGTGGAACTCCTGGCTCTCATCT 4166
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 4167 GACTTTTCTGTCTCTATAACTAAGCATATCAAAGATTTTCTAGGAATTATTTTTCTAAATAAGATGAGTTCCAG 4240
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 4241 AGATGAAGATTGTATCTAGATATCCAAGTATTACTGGATTAGAACTGGTCTATTTATTTTGGATTCTAACTTGA 4314
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 4315 AAAGACTGGCAAGTCGCTGCAGTGCTAAAATAGAAGTGTAAGGGAGACATCACACACACAAGCTACCTGTGGGT 4388
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 4389 CCCAAAGGAAGGGAAACGTTTGCTTGAAGTAAACAAGTACTTTTATCAGGAATCTCTAGTGGAAAGAGACCACC 4462
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 4463 TGACAGTTTCCTGTGAACAAGCCAAAGTACCCTTCAGAGGACTGGTTCTAGATGGAGGTAGATTCCCAGGACTG 4536
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 4537 ACAAACACATGCCTTTTCTAACAGAGCAAGGGAAATGAACGGCAGCTGTTAGTTTCAGGAGTCATTTAGCTCCA 4610
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 4611 AACAGCAGTGTACAGTGTTATTGGAAGGTTCTTTTAAATGTACCTCCTTCTCCCTCAAAACACAGCACACACAT 4684
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 4685 GCACGGACACAAACACGCAGGCCTGTTTGAAGTGTCTTTTCAAACCATTACTCTGACAGCTCACTTGGAAAGTA 4758
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 4759 TTAAAAGTATAAGGCTTTCATCAGTATTGTCTCGGTTTTCCTCATTGCATGGAATAGCCAAAAGCAAGATATCA 4832
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 4833 AAGGCCTGTCCAGAAGTGGCTGGCTGATTGCTGGGGGATTTCCCAGGTCTGCCTTCCACGTGCCTCAGGACATC 4906
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 4907 AGGCACATCCTGCACTGGAAAAGCACTGCCCAGGGGCCCAGGAGCCCCTCCCAGGAGTGCCTTTCCTTCCTGCA 4980
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 4981 GGCTCTGCAGACCCTTGAGCAGCTAGAAGATAGAGTCCACTTTGTAGGGGATCCCAGAACAGAAAAATGACATT 5054
Query 1382 ----------------------------AGGTTTTAGTGCCAAAGAACCCTGCGTTCATGGGGAAGATGGTTGA 1427
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5055 GAGGGACAATGAGGAAACCTGGATAATTAGGTTTTAGTGCCAAAGAACCCTGCGTTCATGGGGAAGATGGTTGA 5128
Query 1428 AGTGGACATCTATGAATCAGGCAAACATTTTATGAAAGGGCAGCCAGTATCTGATGCCAAAGTGTACACGCCCT 1501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5129 AGTGGACATCTATGAATCAGGCAAACATTTTATGAAAGGGCAGCCAGTATCTGATGCCAAAGTGTACACGCCCT 5202
Query 1502 CCATCAGCAAACCGCTAGCAAAGGGAGAAGTCTCGGGTTTGACAAAGGACTTCAGAAATGGGCTTGGGAACCAG 1575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5203 CCATCAGCAAACCGCTAGCAAAGGGAGAAGTCTCGGGTTTGACAAAGGACTTCAGAAATGGGCTTGGGAACCAG 5276
Query 1576 CTGAGTTCAGGATCCCACACCTCTGCTGCATCTCAGTGTGACTCAGCGAGTTCCAGAATGGTGCTGCCCATGCC 1649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5277 CTGAGTTCAGGATCCCACACCTCTGCTGCATCTCAGTGTGACTCAGCGAGTTCCAGAATGGTGCTGCCCATGCC 5350
Query 1650 AAGGCTACATCAAGACTGTGCGCTGAGGATGTCCGTGGGCTTGGCTCTGCTGGGTCTTCTTTTTGCTTTTTTTG 1723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5351 AAGGCTACATCAAGACTGTGCGCTGAGGATGTCCGTGGGCTTGGCTCTGCTGGGTCTTCTTTTTGCTTTTTTTG 5424
Query 1724 TCAAGGTCTATAAT------------------------------------------------------------ 1737
||||||||||||||
Sbjct 5425 TCAAGGTCTATAATTAGAATACAACTAATGGAAACATCTATAAAGAAGAATACATTTCTAATTAAAATCTTCAA 5498
Query 1738 ------------------- 1737
Sbjct 5499 TGAACAGGAAAGCGACATC 5517
