Nucleotide Global Alignment

Description

Query:
ccsbBroad304_03568
Subject:
NR_130317.2
Aligned Length:
2244
Identities:
1047
Gaps:
1194

Alignment

Query    1  ATGACAGTCGAGCTTTGGCTAAGGCTCCGGGGAAAGGGTCTAGCCATGCTGCATGTGACCCGGGGGGTCTGGGG  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  GTCCAGGGTCCGAGTATGGCCACTGTTGCCCGCGCTCCTCGGGCCCCCCCGGGCCCTCTCATCGCTGGCAGCCA  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  AAATGGGGGAGTATCGCAAGATGTGGAACCCCAGGGAGCCCCGCGACTGGGCCCAGCAGTACCGCGAGCGCTTC  222
                                                                   |||      |..||||   
Sbjct    1  -------------------------------------------------------GCA------CATGCGC---  10

Query  223  ATTCCCTTCTCCAAGGAGCAGCTGCTCCGCCTCCTAAT-ACAGGAATTCCACTCGAGTCCGGCAGAGAAGGCGG  295
                         |||||     ||||        ||| ||||         ||||                 |
Sbjct   11  -------------AGGAG-----GCTC--------AATGACAG---------TCGA-----------------G  32

Query  296  CTTTGGAGGCGTTCTCGGCCCACGTGGACTTCTGCACCCTGTTCCACTACCACCAAATCCTGGCCCGGCTGCAG  369
            ||||||                                        |||                       ||
Sbjct   33  CTTTGG----------------------------------------CTA-----------------------AG  43

Query  370  GCCTTATATGACCCCATCAACCCTGACAGGGAGACCCTCGATCAGCCATCACTAACGGATCCCCAGCGTCTGTC  443
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   44  GCCTTATATGACCCCATCAACCCTGACAGGGAGACCCTCGATCAGCCATCACTAACGGATCCCCAGCGTCTGTC  117

Query  444  TAATGAGCAGGAGGTGCTTCGGGCTCTGGAGCCCCTGCTGGCCCAGGCCAACTTCTCCCCGCTGTCTGAGGACA  517
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  118  TAATGAGCAGGAGGTGCTTCGGGCTCTGGAGCCCCTGCTGGCCCAGGCCAACTTCTCCCCGCTGTCTGAGGACA  191

Query  518  CCCTGGCCTACGCGCTGGTGGTCCACCACCCTCAGGATGAGGTCCAGGTGACAGTAAATTTGGATCAGTATGTC  591
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  192  CCCTGGCCTACGCGCTGGTGGTCCACCACCCTCAGGATGAGGTCCAGGTGACAGTAAATTTGGATCAGTATGTC  265

Query  592  TACATTCACTTCTGGGCCCTGGGCCAGCGAGTCGGGCAGATGCCCCTGAAGTCCAGCGTGGGCTCCAGGCGTGG  665
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  266  TACATTCACTTCTGGGCCCTGGGCCAGCGAGTCGGGCAGATGCCCCTGAAGTCCAGCGTGGGCTCCAGGCGTGG  339

Query  666  CTTCTTCACCAAGCTGCCCCCTGCGGAGAGGAGATACTTTAAGCGGGTGGTCCTGGCAGCCCGGACCAAACGGG  739
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  340  CTTCTTCACCAAGCTGCCCCCTGCGGAGAGGAGATACTTTAAGCGGGTGGTCCTGGCAGCCCGGACCAAACGGG  413

Query  740  GACACCTGGTACTGAAGAGTTTCAAGGACACGCCGCTGGAAGGCCTGGAGCAGCTGCTGCCGGAGCTGAAGGTG  813
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  414  GACACCTGGTACTGAAGAGTTTCAAGGACACGCCGCTGGAAGGCCTGGAGCAGCTGCTGCCGGAGCTGAAGGTG  487

Query  814  CGCACGCCCACCCTGCAGCGCGCCCTGCTCAACCTCATGCTGGTAGTCTCCGGCGTGGCGATCTTCGTCAACGT  887
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  488  CGCACGCCCACCCTGCAGCGCGCCCTGCTCAACCTCATGCTGGTAGTCTCCGGCGTGGCGATCTTCGTCAACGT  561

Query  888  GGGCATGGTGGTGCTAACCGACCTCAAGGTGGCCACCTCCCTGCTGCTGCTGCTCTTCGCCATCTTCATGGGCC  961
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  562  GGGCATGGTGGTGCTAACCGACCTCAAGGTGGCCACCTCCCTGCTGCTGCTGCTCTTCGCCATCTTCATGGGCC  635

Query  962  TGCGGGCCTCCAAGATGTTCGGGCAGCGGCGCAGCGCGCAGGCGTTGGAGCTGGCGCACATGCTGTACTATCGC  1035
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  636  TGCGGGCCTCCAAGATGTTCGGGCAGCGGCGCAGCGCGCAGGCGTTGGAGCTGGCGCACATGCTGTACTATCGC  709

Query 1036  AGTACGTCCAACAACTCGGAGCTGCTCAGCGCCCTGGCCCTGCGCGCGCAGGACGAGCACACCAAGGAGGCGCT  1109
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  710  AGTACGTCCAACAACTCGGAGCTGCTCAGCGCCCTGGCCCTGCGCGCGCAGGACGAGCACACCAAGGAGGCGCT  783

Query 1110  GCTGGCTCACAGCTTCCTGGCCCGGCGGCCAGGGGGCACTCAAGGCTCGCCCGAAGAGACCTCCAGGTGGCTCA  1183
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.
Sbjct  784  GCTGGCTCACAGCTTCCTGGCCCGGCGGCCAGGGGGCACTCAAGGCTCGCCCGAAGAGACCTCCAGGTGGCTCC  857

Query 1184  GGTCGGAGGTGGAGAACTGGCTCCTAGCCAAGTCAGGCTGTGAGGTGACCTTCAACGGAACTCGGGCCCTGGCG  1257
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  858  GGTCGGAGGTGGAGAACTGGCTCCTAGCCAAGTCAGGCTGTGAGGTGACCTTCAACGGAACTCGGGCCCTGGCG  931

Query 1258  CATCTGCAGGCCCTGACCCCCAGCATGGGATTGTACCCACCCCCGGGTTTCCCCAAACTAGACCCAGTGGCTCC  1331
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  932  CATCTGCAGGCCCTGACCCCCAGCATGGGATTGTACCCACCCCCGGGTTTCCCCAAACTAGACCCAGTGGCTCC  1005

Query 1332  GATCACTTCCGAGCCCCCGCAAGCCACGCCCAGCAGTAACATCTCC----------------------------  1377
            ||||||||||||||||||||||||||||||||||||||||||||||                            
Sbjct 1006  GATCACTTCCGAGCCCCCGCAAGCCACGCCCAGCAGTAACATCTCCTGAGTAGAACCTACCTCCCTGCCCAGTC  1079

Query 1378  --------------------------------------------------------------------------  1377
                                                                                      
Sbjct 1080  AGCAGGCTAGGAACTAAGCCCCGCCTCCTTCACGACAGGCTGTCAATTACGGTTATTATACTTTTCACTCCAAC  1153

Query 1378  --------------------------------------------------------------------------  1377
                                                                                      
Sbjct 1154  TTCCAATAACTGACAGGTGATTATTTTTGCTGCACTGTGTGCTTAAGCAAAGCAGCCAATCAAAGCAGCTAGCA  1227

Query 1378  --------------------------------------------------------------------------  1377
                                                                                      
Sbjct 1228  GTTGTTAAGTCTTCCCCGCCCCTTCGATGAACAGCCAATCAAAGCGATTTAGCTCTGCTTCTGTTCCATTTCTT  1301

Query 1378  --------------------------------------------------------------------------  1377
                                                                                      
Sbjct 1302  AGTCCCACCCTCACCATAAACATCCAAGTGTGGTTTGGCTGAGGAGCTGAGGGTGTCTGCCAATCACAGCTGCT  1375

Query 1378  --------------------------------------------------------------------------  1377
                                                                                      
Sbjct 1376  CAGCTCTGGCTTCTGTAAACCGCCAGGTAGAAGAGTTAAAGCTGCGCCCTCCCGAGACTATATATCATTGTCTT  1449

Query 1378  --------------------------------------------------------------------------  1377
                                                                                      
Sbjct 1450  TTTCAGCCCGCTCCGGGCAAACTGCCCATCATGTGCACCAAGGCCGTTAGCCCTGCCTCCTGGCAAACGTCCAG  1523

Query 1378  --------------------------------------------------------------------------  1377
                                                                                      
Sbjct 1524  TGACAGCTGCTGGGTTCCATCAACTTTGGGCAGCCGGTTGTCGCTGCAGGGAAGGAACCAATAAGAATTTCTAA  1597

Query 1378  --------------------------------------------------------------------------  1377
                                                                                      
Sbjct 1598  AGGAAACCTGATCTTGCTATCAATTGCTGCTGCTTAAATGGCAGGCCAACTGGTCAGCTGCTGATCAGGGTGTC  1671

Query 1378  --------------------------------------------------------------------------  1377
                                                                                      
Sbjct 1672  TAGGCTGAAGGAGTTGGAGACCTTGTGCTAGGTAGGTGAACCAGAAACCACCCTCGCCACCAAGACTCGCTCCC  1745

Query 1378  --------------------------------------------------------------------------  1377
                                                                                      
Sbjct 1746  AACCTGGCTCCCGGCAACCTCAGGTGCCTTCCTCGCCCAGGTCTTTCACCCTTTCTACAGAAACTACCTCGGTC  1819

Query 1378  --------------------------------------------------------------------------  1377
                                                                                      
Sbjct 1820  TGGATCTCCCCACCACCAGCAGCCTGTGCAATATTTATTGGTCTATCAATTTCTCCCGTCTCCTGTCCCAAAGT  1893

Query 1378  ------------------------  1377
                                    
Sbjct 1894  AATAAATCATGTTTAATAAGTCTG  1917

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