Nucleotide Global Alignment

Description

Query:
ccsbBroad304_03707
Subject:
NM_018902.4
Aligned Length:
2919
Identities:
1744
Gaps:
936

Alignment

Query    1  ----ATGGTTTCCAGATGTAGCTGCCTGGGGGTCCAGTGTCTGCTGCTCTCGCTTCTTCTCCTCGCAGCCTGGG  70
                .||||||.|||| |.||..|..||||...||...|.||.|.|||||.||||||.|||||||.|..|||||
Sbjct    1  ATGTTTGGTTTTCAGA-GAAGGGGATTGGGCACCCCACGACTACAGCTCTGGCTTCTCCTCCTCGAATTCTGGG  73

Query   71  AGGTGGGGAGCGGCCAGCTCCACTACTCAGTCTACGAGGAGGCCAGACACGGCACCTTCGTGGGCCGCATCGCG  144
            ||||||||||||||||||||||||||||.||||..||||||||||.||||||||||||||||||||||||||||
Sbjct   74  AGGTGGGGAGCGGCCAGCTCCACTACTCCGTCTCGGAGGAGGCCAAACACGGCACCTTCGTGGGCCGCATCGCG  147

Query  145  CAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCAGCGCCTGTTCCGGGTGGCGTCCAAAAGACACGGGGACCT  218
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||.||||||||
Sbjct  148  CAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCAGCGCCTGTTCCGGGTGGCGTCCAAAACACATGGGGACCT  221

Query  219  TCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATTGACCGCGAGGAGCTGTGCGGGCGGA  292
            ||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||.||
Sbjct  222  TCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGCGAGGAGCTGTGCGGGCAGA  295

Query  293  GCGTGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCATGTGGACGTGGAAGTG  366
            |||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||.|||
Sbjct  296  GCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCATGTGAACGTGGAGGTG  369

Query  367  AAGGACATTAACGACAACCCGCCCAGGTTCTCCGTAACAGAACAAAAGCTCTCAATACCTGAATCCAGACTGCT  440
            |||||||||||||||||||||||...||||||..|.|.||||||||||||       .||||.|.|.||.| ||
Sbjct  370  AAGGACATTAACGACAACCCGCCGGTGTTCTCGCTCAGAGAACAAAAGCT-------GCTGATTGCGGAAT-CT  435

Query  441  --------TGACTCTCGATTTCCACTAGAAGGCGCATCTGATGCGGATGTTGGAGAGAACGC---ATTGCTTAC  503
                    .|||||.||.|||||||||||.||.||.||||||||.||..|||.||||||.||   ||||   ||
Sbjct  436  AAGCAATCGGACTCGCGTTTTCCACTAGAGGGAGCTTCTGATGCTGACATTGAAGAGAATGCTCTATTG---AC  506

Query  504  TTACAAACTCAGTCCAAATGAGTATTTTGTTCTTGATATT-ATAAACAAA----AA--AGA--CAAAGACAAAT  568
            .||||..||.|||..||||||||||||  |||||.|.||| |..||||||    ||  |||  .||||||    
Sbjct  507  CTACAGGCTAAGTAAAAATGAGTATTT--TTCTTTAGATTCACCAACAAATGGTAAGCAGATTAAAAGAC----  574

Query  569  TCCCAGTG---CTTGTTCTGCGGAAG-CTGCTGGATCGTGAAGAAAA-TCCTCAGCTAAAGTTGTTGTTGACAG  637
                  ||   |||.||.|...|||| || ||||||.|.| |||||| |||..|.||.||.|||.||.|.||||
Sbjct  575  ------TGTCACTTATTTTAAAGAAGTCT-CTGGATAGAG-AGAAAACTCCGGAACTTAATTTGCTGCTAACAG  640

Query  638  CAACTGATGGAGGCAAACCTGAATTTACCGGATCTGTTTCTCTGCTGATCCTGGTGTTAGATGCCAATGATAAC  711
            |.||.||.||.||.|||||.||..||||.||..|.|||...|||.|..|||..||.||.||||.|||.||.||.
Sbjct  641  CTACAGACGGGGGAAAACCAGAGCTTACTGGCACCGTTCGGCTGTTAGTCCAAGTCTTGGATGTCAACGACAAT  714

Query  712  GCCCCTATCTTTGACAGACCGGTTT-AT------GAAGTTAAGATG-----TAT-GAAAATCAAGTGAACCAAA  772
            |     |||     ||||   |||| ||      |||..||||.||     ||| ||||||...|..||..|||
Sbjct  715  G-----ATC-----CAGA---GTTTGATAAATCAGAATATAAGGTGAGCCTTATGGAAAATGCTGCTAAAGAAA  775

Query  773  CATTAGTAATACGGCTC------AACGCTTCTGATTCG-GATGAAGGAATAAACAA-GGAAATGATGTATTCAT  838
            |..|.||      ||||      |||||..|.|| .|| ||.||||||.|   ||| |||   ||.||| .|||
Sbjct  776  CTCTTGT------GCTCAAACTAAACGCCACAGA-CCGAGACGAAGGAGT---CAATGGA---GAGGTA-ACAT  835

Query  839  TTAGCTCTTTGGTCCCA------CCCACGATAAGAAGGAA-------ATTT----TGGAT-AAACGAAAGGACG  894
               .|||.||..|..||      ||||       |.||||       ||||    |.||| |||..||     .
Sbjct  836  ---ACTCCTTAATGTCAATTAAGCCCA-------ATGGAAGACACTTATTTACACTAGATCAAAATAA-----T  894

Query  895  GGAGAAATAAAAGTAAATGATGCTATTGACTTTGAGGACAGTAACACTTATGAAATTCATGTAGATGTTACAGA  968
            ||||||.|.|..||.||||...||.|.||.|.|||.||.|..||...||||.|||||.|.|||.|.|.||||||
Sbjct  895  GGAGAAGTGAGGGTCAATGGAACTTTAGATTATGAAGAAAACAAGTTTTATAAAATTGAAGTACAGGCTACAGA  968

Query  969  TAAGGGAAACCCACCTATGGTTGGTCACTGCACGGTCCTAGTGGAACTACTGGATGAAAATGATAATTCACCTG  1042
            ||||||.|..||.||.||||..||||||||.||.|||...||||||.|..||||....||.|||||.||.||||
Sbjct  969  TAAGGGGACTCCCCCAATGGCAGGTCACTGTACAGTCTGGGTGGAAATCTTGGACACCAACGATAACTCTCCTG  1042

Query 1043  AGGTGATTGTCACTTCTCTGTCTCTCCCAGTGAAAGAAGATGCTCAAGTGG----GCACCGTCATTGCCCTAAT  1112
            |.||....||.|||||..||||.||||||||...|||.||.|||||    |    ||||.|||||||||||.||
Sbjct 1043  AAGTCGCCGTGACTTCCTTGTCCCTCCCAGTACGAGAGGACGCTCA----GCCCAGCACGGTCATTGCCCTGAT  1112

Query 1113  CAGCGTTTCTGACCATGATTCAGGAGCCAACGGACAGGTCACCTGCTCTCTGACGCCTCACGTTCCGTTCAAGC  1186
            ||||||.|||||||.|||.|||||.|.||||||||||||.||||||||.||||||||.||||||||.|||||||
Sbjct 1113  CAGCGTGTCTGACCGTGACTCAGGTGTCAACGGACAGGTGACCTGCTCGCTGACGCCCCACGTTCCCTTCAAGC  1186

Query 1187  TGGTGTCCACCTACAAGAATTACTACTCATTGGTGCTGGACAGCGCTCTGGACCGCGAGAGGGTGTCGGCCTAT  1260
            ||||||||||||.|||||||||||||||.|||||||||||||||||.|||||||||||||..||||.|||||||
Sbjct 1187  TGGTGTCCACCTTCAAGAATTACTACTCGTTGGTGCTGGACAGCGCCCTGGACCGCGAGAACGTGTGGGCCTAT  1260

Query 1261  GAGCTGGTGGTGACCGCGCGGGACGGGGGCTCGCCTCCGCTGTGGGCCACGGCCAGCGTGTCTGTGGAGGTGGC  1334
            ||.|||||||||||.||||||||.|||||.||||||.|.|||||||||||||||||.||.||.|||||||||||
Sbjct 1261  GAACTGGTGGTGACTGCGCGGGATGGGGGTTCGCCTTCTCTGTGGGCCACGGCCAGGGTATCCGTGGAGGTGGC  1334

Query 1335  CGACGTGAACGACAACGCGCCTGCGTTCGCGCAGTCCGAGTACACGGTGTTCGTGAAGGAGAACAACCCGCCAG  1408
            |||||||||||||||.||||||||||||||.|||.||||||||||.|||||||||||||||||||||||.||||
Sbjct 1335  CGACGTGAACGACAATGCGCCTGCGTTCGCACAGCCCGAGTACACCGTGTTCGTGAAGGAGAACAACCCACCAG  1408

Query 1409  GCTGCCACATCTTCACGGTGTCTGCGTGGGACGCGGACGCGCAGGAGAACGCCCTGGTGTCCTACTCTCTGGTG  1482
            ||||||||||||||||.|||||.|||.|||||||||||||||||||||||||.||||||||||||||.||||||
Sbjct 1409  GCTGCCACATCTTCACAGTGTCGGCGCGGGACGCGGACGCGCAGGAGAACGCGCTGGTGTCCTACTCGCTGGTG  1482

Query 1483  GAGCGGCGGTTGGGCGAGCGCTCGCTGTCGAGCTACGTGTCGGTGCACGCGGAGAGCGGCAAGGTGTACGCGCT  1556
            |||||||||||||||||.|||.||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1483  GAGCGGCGGTTGGGCGACCGCGCGCTGTCGAGCTACGTGTCGGTGCACGCGGAGAGCGGCAAGGTGTACGCGCT  1556

Query 1557  GCAGCCGCTGGACCACGAGGAGCTGGAGCTGCTACAGTTC----------------------------------  1596
            |||||||.||||||||||||||||||||||||||||||||                                  
Sbjct 1557  GCAGCCGTTGGACCACGAGGAGCTGGAGCTGCTACAGTTCCAGGTGAGCGCGCGCGATGCGGGCGTGCCGCCTC  1630

Query 1597  --------------------------------------------------------------------------  1596
                                                                                      
Sbjct 1631  TGAGCAGCAACGTGACGCTGCAGGTGTTCGTGCTGGACGAGAACGACAACGCGCCGGCACTGCTGGCGACTCAG  1704

Query 1597  --------------------------------------------------------------------------  1596
                                                                                      
Sbjct 1705  GCTGGCAGCGCGGGAGGCGCAGTTAACAAGCTAGTACCGCGGTCGGTGGGTGCGGGCCACGTGGTGGCGAAGGT  1778

Query 1597  --------------------------------------------------------------------------  1596
                                                                                      
Sbjct 1779  GCGCGCAGTGGATGCGGACTCAGGCTACAACGCGTGGCTTTCATATGAATTGCAGCCGGCGGCGGGCGGCTCGC  1852

Query 1597  --------------------------------------------------------------------------  1596
                                                                                      
Sbjct 1853  GCATCCCGTTCCGCGTGGGGCTGTACACGGGCGAGATAAGCACAACGCGTGCCCTGGACGAGGCAGACTCGCCG  1926

Query 1597  --------------------------------------------------------------------------  1596
                                                                                      
Sbjct 1927  CGCCACCGACTTCTAGTACTGGTGAAGGATCACGGTGAGCCGGCGCTGACGGCCACGGCCACCGTGCTGGTGTC  2000

Query 1597  --------------------------------------------------------------------------  1596
                                                                                      
Sbjct 2001  GTTGGTGGAGAGCGGACAGGCGCCAAAGGCCTCTTCCCGGACTTTGGCGGGCGCCGCGAGCCCAGAGGCTGCGC  2074

Query 1597  --------------------------------------------------------------------------  1596
                                                                                      
Sbjct 2075  TGGTGGATGTCAACGTGTACCTGATCATCGCCATCTGCGTGGTGTCCAGCCTCCTGGTACTCACGCTGCTGCTG  2148

Query 1597  --------------------------------------------------------------------------  1596
                                                                                      
Sbjct 2149  TATACGGCGCTGTGGTGGTCGGCAACGCCCACTGAGGGCGCGTGCGCGCCGGGGAAGCCCACGCTGGTGTGCTC  2222

Query 1597  --------------------------------------------------------------------------  1596
                                                                                      
Sbjct 2223  CCGCGCGGTGGGGAGCTGGTCATACTCGCAGCAGAGGCGGCAGAGGGTGTGCTCTGAGGAGGGCCCACCTAAGA  2296

Query 1597  --------------------------------------------------------------------------  1596
                                                                                      
Sbjct 2297  CGGACCTCATGGCCTTCAGCCCCAGTCTTCCTCTAGGTCTGAATAAAGAGGAGGAAGGGGAAAGACAGGAGCCA  2370

Query 1597  ------------------CAGCCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCAT  1652
                              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2371  GGGTCAAATCACCCCGGACAGCCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCAT  2444

Query 1653  GCACAGCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAA  1726
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2445  GCACAGCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAA  2518

Query 1727  CAGTATCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACAGCAAC  1800
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2519  CAGTATCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACAGCAAC  2592

Query 1801  AGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGCCCGACAAATTCATTAT  1874
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2593  AGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGCCCGACAAATTCATTAT  2666

Query 1875  CCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAAAGTGACTTCATAA  1948
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2667  CCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAAAGTGACTTCATAA  2740

Query 1949  CCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAG  2022
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2741  CCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAG  2814

Query 2023  AAAGGGAACAGCACGACTGACAACAGTGACCAG  2055
            |||||||||||||||||||||||||||||||||
Sbjct 2815  AAAGGGAACAGCACGACTGACAACAGTGACCAG  2847

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