Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_03707
- Subject:
- NM_018903.4
- Aligned Length:
- 2887
- Identities:
- 1755
- Gaps:
- 896
Alignment
Query 1 ATGGT--TT------CCAGATGTAGCTGCCTGGGGGTCCAGTGTCTGCTGCTCTCGCTTCTTCTCCTCGCAGCC 66
||||| || ||| ||..|||.|||...||||.|||||||||||||||||||.|||||.||||||
Sbjct 1 ATGGTGATTATCGGACCA-----AGAGGCCCGGGATCCCAGCGTCTGCTGCTCTCGCTTCTGCTCCTTGCAGCC 69
Query 67 TGGGAGGTGGGGAGCGGCCAGCTCCACTACTCAGTCTACGAGGAGGCCAGACACGGCACCTTCGTGGGCCGCAT 140
||||||||||||||||||||||||||||||||.||||||||||||||||.||||||||||||||||||||||||
Sbjct 70 TGGGAGGTGGGGAGCGGCCAGCTCCACTACTCCGTCTACGAGGAGGCCAAACACGGCACCTTCGTGGGCCGCAT 143
Query 141 CGCGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCAGCGCCTGTTCCGGGTGGCGTCCAAAAGACACGGGG 214
|||.||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||
Sbjct 144 CGCTCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCCGGGTGGCGTCCAAAAGACACGGGG 217
Query 215 ACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATTGACCGCGAGGAGCTGTGCGGG 288
||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||.|||||||||||
Sbjct 218 ACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGCGAGAAGCTGTGCGGG 291
Query 289 CGGAGCGTGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCATGTGGACGTGGA 362
|||||||.|||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 CGGAGCGCGGAGTGCAGTATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCATGTGGACGTGGA 365
Query 363 AGTGAAGGACATTAACGACAACCCGCCCAGGTTCTCCGTAACAGAACAAAAGCTCTCAATACCTGAATCCAGAC 436
.||||||||||||||||||||||||||...||||...|.||..|||||||||.|..|..|..|||||| |
Sbjct 366 GGTGAAGGACATTAACGACAACCCGCCGGTGTTCAGAGAAAGGGAACAAAAGGTACCTGTTTCTGAAT-----C 434
Query 437 TG-----CTTGACTCTCGATTTCCACTAGAAGGCGCATCTGATGCGGATGTTGGAGAGAACGCATTGCTTAC-- 503
|| ||.|||||||..|||||.|||||.|||||.||||||||||||.|.||.|..|||.|..|..|.||
Sbjct 435 TGCGCCTCTGGACTCTCATTTTCCTCTAGAGGGCGCTTCTGATGCGGATATCGGCGTAAACTCTCTTTTGACCT 508
Query 504 -----TTACAAACTCAGTCCAAATGAGTATTTTGTTCTTGATATTATAAAC-AAAAAAGACAAAGACAAATTCC 571
||| ||||.|||||||.||||||..||| |.|.||.|||| ||||||||.|||...|.|||.|
Sbjct 509 ATGCGTTA-------AGTCTAAATGAGAATTTTGAGCTT-AAAATAAAAACAAAAAAAGATAAAAGTATATTGC 574
Query 572 CAGTGCTTGTTCTGCGGAAGCTGCTGGATCGTGAAGAAAATCCTCAGCTAAAGTTGTTGTTGACAGCAACTGAT 645
|.|...|.|||||.||||||.|..||||..|.||..|||..||..|.||.||.||.|||.|||..|.||..|||
Sbjct 575 CTGAATTAGTTCTTCGGAAGTTATTGGACAGAGAGCAAACGCCAAAACTCAATTTATTGCTGATGGTAATCGAT 648
Query 646 GGAGGCAAACCTGAATTTACCGGATCTGT-----TTCTCTGCTGA--------TCCTGG-TGTTAGATGCCAAT 705
||.||.|||||.|||.|.||.||.||||| ||| | |||||| |||.| |||.||||
Sbjct 649 GGCGGTAAACCAGAACTAACAGGGTCTGTCCAGATTC-------AAATAACCGTCCTGGATGTGA-ATGACAAT 714
Query 706 GATAACGCCCCTATCTTTGA-CAGACCGGTTTATGAAGTTAAGATGTATGAAAAT---CAAGTGAACCAAACAT 775
|.| ||....||||| .||.||.| .|||.||||...|.|||.||||||| ||| |||.|.|||.
Sbjct 715 GGT------CCGGCGTTTGATAAGCCCAG-CTATAAAGTAGTGTTGTCTGAAAATGTCCAA---AACGACACAA 778
Query 776 TAGTAATACGGCTCAACGCTTCTGATTCGGATGAAGGAATAAACAAGGAAATGATGTATTCATTTAGCTCTTTG 849
.|||.||.|..||.||.|||||.|||.|.||.||||||.|.||....||||| ||| ||.||
Sbjct 779 GAGTGATCCAACTAAATGCTTCCGATCCAGACGAAGGACTTAATGGAGAAAT------TTC--------CTATG 838
Query 850 GTCCCACCCACGATAAGAAGGAAATTTTG---------GATAAACGAAAG-----------------GACGGGA 897
| |||.|.||.| |||||| ||.|||.|.|.| .||.||.
Sbjct 839 G----------GATCAAAATG--ATTTTGCCAGTGAGTGAGAAATGTATGTTTTCAATAAATCCAGACACAGGT 900
Query 898 GAAATAAAAGTAAATGATGCTATTGACTTTGAGGACAGTAACACTTATGAAATTCATGTAGATGTTACAGAT-A 970
|||||.|.|.|..|||.||...|.||.|||||.||.|.|||..|.|||||||||||.||..|.|..|..||| |
Sbjct 901 GAAATTAGAATTTATGGTGAACTGGATTTTGAAGAGAATAATGCCTATGAAATTCAGGTTAACGCCATTGATAA 974
Query 971 AGGGAAACCCACCTATGGTTGGTCACTGCACGGTCCTAGTGGAACTACTGGATGAAAATGATAAT-TCACCTGA 1043
|||||..||..|| ||||..||||||.|||.||||||.||||||.|.|||||.|..|||||.||| || |||||
Sbjct 975 AGGGATTCCTTCC-ATGGCAGGTCACAGCATGGTCCTGGTGGAAGTTCTGGACGTGAATGACAATGTC-CCTGA 1046
Query 1044 GGTGATTGTCACTTCTCTGTCTCTCCCAGTGAAAGAAGATGCTCAAGTGGGCACCGTCATTGCCCTAATCAGCG 1117
.||.||.||.|||||.|||||.|||||.|||.||||.||||||||.|||||.||||||||||||||.||.||||
Sbjct 1047 AGTAATGGTTACTTCACTGTCGCTCCCTGTGCAAGAGGATGCTCAGGTGGGTACCGTCATTGCCCTGATTAGCG 1120
Query 1118 TTTCTGACCATGATTCAGGAGCCAACGGACAGGTCACCTGCTCTCTGACGCCTCACGTTCCGTTCAAGCTGGTG 1191
|.||.||.|.|||.||.||||||||.||||||||||.||||||.|||||.|||||.|||||.||||||||||||
Sbjct 1121 TGTCGGATCGTGACTCTGGAGCCAATGGACAGGTCATCTGCTCACTGACACCTCATGTTCCCTTCAAGCTGGTG 1194
Query 1192 TCCACCTACAAGAATTACTACTCATTGGTGCTGGACAGCGCTCTGGACCGCGAGAGGGTGTCGGCCTATGAGCT 1265
|||||||||||||||||||||||.|||||||||||||||||.||||||||||||||.|||||||||||||||||
Sbjct 1195 TCCACCTACAAGAATTACTACTCGTTGGTGCTGGACAGCGCCCTGGACCGCGAGAGCGTGTCGGCCTATGAGCT 1268
Query 1266 GGTGGTGACCGCGCGGGACGGGGGCTCGCCTCCGCTGTGGGCCACGGCCAGCGTGTCTGTGGAGGTGGCCGACG 1339
|||||||||.||||||||.||||||||||||.||||||||||||||||.||.|||||.||||||||||||||||
Sbjct 1269 GGTGGTGACTGCGCGGGATGGGGGCTCGCCTTCGCTGTGGGCCACGGCTAGAGTGTCCGTGGAGGTGGCCGACG 1342
Query 1340 TGAACGACAACGCGCCTGCGTTCGCGCAGTCCGAGTACACGGTGTTCGTGAAGGAGAACAACCCGCCAGGCTGC 1413
||||||||||.||||||||||||||||||.||||||||||.||||||||||||||||||||||||||.||||||
Sbjct 1343 TGAACGACAATGCGCCTGCGTTCGCGCAGCCCGAGTACACAGTGTTCGTGAAGGAGAACAACCCGCCGGGCTGC 1416
Query 1414 CACATCTTCACGGTGTCTGCGTGGGACGCGGACGCGCAGGAGAACGCCCTGGTGTCCTACTCTCTGGTGGAGCG 1487
|||||||||||||||||.||.||||||||||||||||||.|||||||.||||||||||||||.|||||||||||
Sbjct 1417 CACATCTTCACGGTGTCGGCATGGGACGCGGACGCGCAGAAGAACGCGCTGGTGTCCTACTCGCTGGTGGAGCG 1490
Query 1488 GCGGTTGGGCGAGCGCTCGCTGTCGAGCTACGTGTCGGTGCACGCGGAGAGCGGCAAGGTGTACGCGCTGCAGC 1561
||||.|||||||||.|.|.|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 GCGGGTGGGCGAGCACGCACTGTCGAGCTACGTGTCGGTGCACGCGGAGAGCGGCAAGGTGTACGCGCTGCAGC 1564
Query 1562 CGCTGGACCACGAGGAGCTGGAGCTGCTACAGTTCCAG------------------------------------ 1599
||||.|||||||||||||||||||||||.|||||||||
Sbjct 1565 CGCTAGACCACGAGGAGCTGGAGCTGCTGCAGTTCCAGGTGAGCGCGCGCGACGCCGGCGTGCCGCCTCTGGGC 1638
Query 1600 -------------------------------------------------------------------------- 1599
Sbjct 1639 AGCAACGTGACGCTGCAGGTGTTCGTGCTGGACGAGAACGACAACGCGCCGGCACTGCTGGCGACTCCGGCTGG 1712
Query 1600 -------------------------------------------------------------------------- 1599
Sbjct 1713 CAGCGCAGGAGGCGCAGTTAGCGAGTTGGTACCGCGGTCGGTGGGTGCGGGCCACGTGGTGGCGAAAGTGCGCG 1786
Query 1600 -------------------------------------------------------------------------- 1599
Sbjct 1787 CGGTGGACGCTGACTCCGGCTATAACGCTTGGCTGTCCTACGAGTTGCAACCGGCGGCGGTCGGCGCGCACATC 1860
Query 1600 -------------------------------------------------------------------------- 1599
Sbjct 1861 CCGTTCCACGTGGGGCTGTACACTGGCGAGATCAGCACGACACGCATCCTGGATGAGGCGGACGCTCCGCGCCA 1934
Query 1600 -------------------------------------------------------------------------- 1599
Sbjct 1935 CCGCCTGCTGGTGCTGGTGAAGGACCACGGTGAGCCCGCGCTGACGTCCACGGCCACGGTGCTGGTGTCGCTGG 2008
Query 1600 -------------------------------------------------------------------------- 1599
Sbjct 2009 TGGAGAACGGCCAGGCCCCAAAGACGTCGTCGCGGGCCTCAGTGGGCGCTGTGGATCCCGAAGCGGCTCTGGTG 2082
Query 1600 -------------------------------------------------------------------------- 1599
Sbjct 2083 GATATTAACGTGTACCTCATCATCGCCATCTGTGCGGTGTCCAGCCTGCTGGTGCTCACGCTGCTGCTGTACAC 2156
Query 1600 -------------------------------------------------------------------------- 1599
Sbjct 2157 TGCGCTGCGTTGCTCAGCGCCGCCCACCGTGAGCCGGTGCGCGCCGGGCAAGCCCACGCTGGTGTGCTCCAGCG 2230
Query 1600 -------------------------------------------------------------------------- 1599
Sbjct 2231 CCGTGGGGAGTTGGTCTTACTCGCAGCAGAGGAGGCAGAGGGTGTGCTCTGCAGAGAGCCCGCCCAAGACGGAC 2304
Query 1600 ---------------------------------------------------------------CCACGACAGCC 1610
|||||||||||
Sbjct 2305 CTCATGGCCTTCAGCCCAAGCCTTCAGCTGTCTCGAGAAGATTGTTTAAATCCTCCCAGTGAACCACGACAGCC 2378
Query 1611 CAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCACAGCTCTGTGCACCTAGAGGAGGCTGGCA 1684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2379 CAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCACAGCTCTGTGCACCTAGAGGAGGCTGGCA 2452
Query 1685 TTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCAACACCAGAACCAGAGGCA 1758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2453 TTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCAACACCAGAACCAGAGGCA 2526
Query 1759 GGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACAGCAACAGCTGGACCTTTAAATACGGACCAGGCAACCC 1832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2527 GGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACAGCAACAGCTGGACCTTTAAATACGGACCAGGCAACCC 2600
Query 1833 CAAACAATCCGGTCCCGGTGAGTTGCCCGACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGC 1906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2601 CAAACAATCCGGTCCCGGTGAGTTGCCCGACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGC 2674
Query 1907 AGGAGCCTACTAACAGCCAAATTGACAAAAGTGACTTCATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAG 1980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2675 AGGAGCCTACTAACAGCCAAATTGACAAAAGTGACTTCATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAG 2748
Query 1981 AAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACTGACAACAGTGACCA 2054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2749 AAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACTGACAACAGTGACCA 2822
Query 2055 G 2055
|
Sbjct 2823 G 2823
