Nucleotide Global Alignment

Description

Query:
ccsbBroad304_03707
Subject:
NM_018907.4
Aligned Length:
2900
Identities:
1740
Gaps:
904

Alignment

Query    1  ATGG---TTTCCAGATGTAGCTGCCTGGGGGTCCAGTGTCTGCTGCTCTCGCTTCTTCTCCTCGCAGCCTGGGA  71
            ||||   |||||.|..|.|||.|||.||....||.|.||||||||||||..|||||||||||||||||||||||
Sbjct    1  ATGGAGTTTTCCTGGGGAAGCGGCCAGGAATCCCGGCGTCTGCTGCTCTTACTTCTTCTCCTCGCAGCCTGGGA  74

Query   72  GGTGGGGAGCGGCCAGCTCCACTACTCAGTCTACGAGGAGGCCAGACACGGCACCTTCGTGGGCCGCATCGCGC  145
            ||..||||.|||.||||||||||||||.||||.|||||||||||.|||||||||||||||||||||||||||||
Sbjct   75  GGCAGGGAACGGTCAGCTCCACTACTCGGTCTCCGAGGAGGCCAAACACGGCACCTTCGTGGGCCGCATCGCGC  148

Query  146  AGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCAGCGCCTGTTCCGGGTGGCGTCCAAAAGACACGGGGACCTT  219
            ||||||||||.||||||||||||||||||||||.||||||||||||||||||||||||..|.|.|||.|.||||
Sbjct  149  AGGACCTGGGACTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCCGGGTGGCGTCCAAGGGCCGCGGAGGCCTT  222

Query  220  CTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATTGACCGCGAGGAGCTGTGCGGGCGGAG  293
            |||||||||||||||||||||||||||||||||||||||||||||||.|||||.||||||||||||.|||||||
Sbjct  223  CTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGGGAGGAGCTGTGCCGGCGGAG  296

Query  294  CGTGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCATGTGGACGTGGAAGTGA  367
            ||.||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||.||||
Sbjct  297  CGCGGAGTGCAGCATCCACCTGGAGGTGATCGTAGACAGGCCGCTGCAGGTTTTCCATGTGGACGTGGAGGTGA  370

Query  368  AGGACATTAACGACAACCCGCCCAGGTTCTCCGTAACAGAACAAAAGCTCTCAATACCTGAATCCAGACTGCTT  441
            .||||||||||||.||||||||...||||.|.|.||||.||.|.||.||.||.||..|.||||||||.|.||||
Sbjct  371  GGGACATTAACGATAACCCGCCGGTGTTCCCAGCAACACAAAAGAACCTGTCCATCGCGGAATCCAGGCCGCTT  444

Query  442  GACTCTCGATTTCCACTAGAAGGCGCATCTGATGCGGATGTTGGAGAGAACGCATTGCTTACTTACAAACTCAG  515
            ||||||||.|||||||||||.|||||.||.|||||.|||.|.||.||||||||..||||.|||||||.|||.||
Sbjct  445  GACTCTCGGTTTCCACTAGAGGGCGCCTCGGATGCAGATATCGGGGAGAACGCCCTGCTCACTTACAGACTGAG  518

Query  516  TCCAAATGAGTATTTTGTTCTTGATATTATAAACAAAAAAGAC--AAAGAC--------AAA-----TTCCCAG  574
            .||||||||.||.|||..|||.|           |||||..||  .|.|||        |||     ||    |
Sbjct  519  CCCAAATGAATACTTTTCTCTGG-----------AAAAACCACCTGATGACGAGCTGGTAAAAGGTCTT----G  577

Query  575  TGCTTGTTCTGCGGAAGCTGCTGGATC--------GTGAAGAAAATCCTCAGCTAAAGTTGT----TGTTGACA  636
            .||||.|..|.|||||        |||        |.||||||..|||..||    |.||.|    ||.|.|||
Sbjct  578  GGCTTATATTACGGAA--------ATCTTTAGACAGAGAAGAAGCTCCGGAG----ATTTTTTTAGTGCTCACA  639

Query  637  GCAACTGATGGAGGCAAACCTGAATTTAC-----CGGATCTGTTTCTCTGCTGATCCTGGTGTTAGATGCCAAT  705
            ||.|||||||||||||||||.||.||.||     |.|.||.|||.|||     |||...||..|.|||||||||
Sbjct  640  GCCACTGATGGAGGCAAACCCGAGTTGACTGGCACCGTTCAGTTACTC-----ATCACAGTACTGGATGCCAAT  708

Query  706  GATAACGCCCCTATC-TTTGACAGACCGGTTTATGAAGTTAAGATGTA--TGAAAAT----CAAGTGAACCAAA  772
            ||.||.||||| |.| |||||||||.|..||||| |||.|.|||| ||  .||||||    |.|.||    .||
Sbjct  709  GACAATGCCCC-AGCTTTTGACAGAACCATTTAT-AAGGTGAGAT-TACTAGAAAATGTTCCTAATG----GAA  775

Query  773  CATTAGTAATACGGCTCAACGCTTCTGATTCGGATGAAGGAATAAACAAGGAAATGATGTATTCATTTAGCTC-  845
            ||||.|||||....||.|||||.||.||||..||.||||||.|.||...|||.||..|.||||||||   ||| 
Sbjct  776  CATTGGTAATTAAACTTAACGCCTCAGATTTAGACGAAGGATTGAATGGGGACATTGTTTATTCATT---CTCA  846

Query  846  -------TTTGGTCCCACCCACGATAAGAA--GGAAATTTTGGATAAACGAAAGGACGGGAGAAATAAAAGTAA  910
                   |||.|  |||     .||..|||  ..||.|||...|||.|...||..||.|||.||||.|..||||
Sbjct  847  AATGATATTTCG--CCA-----AATGTGAAATCCAAGTTTCACATAGATCCAATTACTGGACAAATTATTGTAA  913

Query  911  A-TGATGCTATTGACTTTGAGGACAGTAACACTTATGAAATTCATGTAGATGTTACAGATAAGGGAAA---CCC  980
            | .||| .||||||||||||.||.||.||..|.|||||||||..||||||.|..|..|||||||||.|   |||
Sbjct  914  AGGGAT-ATATTGACTTTGAAGAAAGCAAATCCTATGAAATTATTGTAGAGGGCATTGATAAGGGACAGCTCCC  986

Query  981  ACCTATGGT-TGGTCACTGCACGGTCCTAGTGGAACTACTGGATGAAAATGATAAT-TCACCTGAGGTG--ATT  1050
            ||.|    | |||.||.||.|..||..|.||||||.||...||..|.||.|||||| || ||.||..||  || 
Sbjct  987  ACTT----TCTGGCCATTGTAGAGTTATTGTGGAAGTAGAAGACAACAACGATAATGTC-CCAGATTTGGAAT-  1054

Query 1051  GTCACTTCTCTGTCTCTCCCAGTGAAAGAAGATGCTCAAGTGGGCACCGTCATTGCCCTAATCAGCGTTTCTGA  1124
             |||..|||.|.||.||.|||.|.|.|||.||.||||.|.||||.||.|||||.|||||.||||||||.||.||
Sbjct 1055  -TCAAGTCTTTATCACTTCCAATTAGAGAGGACGCTCCACTGGGTACAGTCATCGCCCTGATCAGCGTGTCCGA  1127

Query 1125  CCATGATTCA--GGAGCCAACGGACAGGTCACCTGCTCTCTGACGCCTCACGTTCCGTTCAAGCTGGTGTCCAC  1196
            |.|.||  ||  ||.|.|||.||.|.||||||||||||..|||||.|.|||||.||.|||||||||||||||||
Sbjct 1128  CAAAGA--CATGGGTGTCAATGGGCTGGTCACCTGCTCCTTGACGTCCCACGTCCCCTTCAAGCTGGTGTCCAC  1199

Query 1197  CTACAAGAATTACTACTCATTGGTGCTGGACAGCGCTCTGGACCGCGAGAGGGTGTCGGCCTATGAGCTGGTGG  1270
            ||.|||||||||||||||.||||||||||||||.||.||||||||||||||.|||||.||||||||||||||||
Sbjct 1200  CTTCAAGAATTACTACTCGTTGGTGCTGGACAGTGCCCTGGACCGCGAGAGCGTGTCAGCCTATGAGCTGGTGG  1273

Query 1271  TGACCGCGCGGGACGGGGGCTCGCCTCCGCTGTGGGCCACGGCCAGCGTGTCTGTGGAGGTGGCCGACGTGAAC  1344
            ||||||||||.|||||||||||||||.|||||||||||||||||||.||.||||||||||||||.||.||||||
Sbjct 1274  TGACCGCGCGAGACGGGGGCTCGCCTTCGCTGTGGGCCACGGCCAGTGTTTCTGTGGAGGTGGCTGATGTGAAC  1347

Query 1345  GACAACGCGCCTGCGTTCGCGCAGTCCGAGTACACGGTGTTCGTGAAGGAGAACAACCCGCCAGGCTGCCACAT  1418
            ||||||||.||.||||||||||||.||||||||||.||||||||||||||||||||||||||.|||||||||||
Sbjct 1348  GACAACGCTCCGGCGTTCGCGCAGCCCGAGTACACAGTGTTCGTGAAGGAGAACAACCCGCCGGGCTGCCACAT  1421

Query 1419  CTTCACGGTGTCTGCGTGGGACGCGGACGCGCAGGAGAACGCCCTGGTGTCCTACTCTCTGGTGGAGCGGCGGT  1492
            ||||||.|||||||||||||||||||||||||||||||||||.||||||||||||||.|||||.|||||||||.
Sbjct 1422  CTTCACTGTGTCTGCGTGGGACGCGGACGCGCAGGAGAACGCGCTGGTGTCCTACTCGCTGGTAGAGCGGCGGG  1495

Query 1493  TGGGCGAGCGCTCGCTGTCGAGCTACGTGTCGGTGCACGCGGAGAGCGGCAAGGTGTACGCGCTGCAGCCGCTG  1566
            |.||.||||||.||||||||||||||||.||||||||.||||||||||||||||||||||||||||||||||||
Sbjct 1496  TAGGGGAGCGCGCGCTGTCGAGCTACGTTTCGGTGCATGCGGAGAGCGGCAAGGTGTACGCGCTGCAGCCGCTG  1569

Query 1567  GACCACGAGGAGCTGGAGCTGCTACAGTTCC-------------------------------------------  1597
            ||||||||||||||.||||||||.|||||.|                                           
Sbjct 1570  GACCACGAGGAGCTAGAGCTGCTGCAGTTTCAGGTGACCGCTCGCGATGCCGGCGTGCCACCTCTGGGCAGCAA  1643

Query 1598  --------------------------------------------------------------------------  1597
                                                                                      
Sbjct 1644  CGTGACGCTGCAGGTGTTCGTGCTGGACGAAAACGACAACGCGCCAGCACTGCTAGCGCCTCGGGCGGGTGGCA  1717

Query 1598  --------------------------------------------------------------------------  1597
                                                                                      
Sbjct 1718  CTGGTGGCGCAGTGAGCGAGCTGGTGCCATGGTCGGTGGGTGTGGGCCACGTGGTGGCAAAGGTGCGCGCGGTG  1791

Query 1598  --------------------------------------------------------------------------  1597
                                                                                      
Sbjct 1792  GATGCTGACTCGGGCTACAACGCGTGGCTTTCGTACGAGCTGCAGCCGGGGACTGGTGGCGCGCGCATCCCGTT  1865

Query 1598  --------------------------------------------------------------------------  1597
                                                                                      
Sbjct 1866  CCGCGTGGGGCTGTACACTGGCGAGATCAGCACAACGCGTGCCCTGGACGAAACGGACGCTCCGCGCCACCGCC  1939

Query 1598  --------------------------------------------------------------------------  1597
                                                                                      
Sbjct 1940  TACTGGTACTGGTGAAGGACCACGGCGAGCCCGCGCTGACGGCCACGGCCACTGTGCTGGTGTCACTTGTGGAG  2013

Query 1598  --------------------------------------------------------------------------  1597
                                                                                      
Sbjct 2014  AGTGGACAGGCGCCAAAGGCCTCCTCACGGGCGTTGGTGGGCGCTGTGGGTCCCGATGCTGCGCTGGTGGATGT  2087

Query 1598  --------------------------------------------------------------------------  1597
                                                                                      
Sbjct 2088  CAACGTATACCTGATCATTGCCATCTGCGCGGTGTCCAGCCTTTTGGTGCTCACGCTGCTGCTGTACACCGCGC  2161

Query 1598  --------------------------------------------------------------------------  1597
                                                                                      
Sbjct 2162  TGCGGTGCTCTGCGCTGCCCACCGAGGGCGCGTGCGCTCCGGGCAAGCCCACGCTGGTGTGCTCCAGTGCGGTG  2235

Query 1598  --------------------------------------------------------------------------  1597
                                                                                      
Sbjct 2236  GGGAGCTGGTCATACTCGCAGCAGAGGAGGCCGAGGGTGTGCTCTGGTGAGGGCCCACCCAAGACCGACCTCAT  2309

Query 1598  --------------------------------------------------------------------------  1597
                                                                                      
Sbjct 2310  GGCCTTCAGCCCCAGTTTACCTGACTCTAGGGACAGAGAAGATCAGCTGCAGACAACTGAGGAATCCTTTGCAA  2383

Query 1598  AGCCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCACAGCTCTGTGCACCTA  1671
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2384  AGCCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCACAGCTCTGTGCACCTA  2457

Query 1672  GAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCAACACC  1745
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2458  GAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCAACACC  2531

Query 1746  AGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACAGCAACAGCTGGACCTTTAAATACG  1819
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2532  AGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACAGCAACAGCTGGACCTTTAAATACG  2605

Query 1820  GACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGCCCGACAAATTCATTATCCCAGGATCTCCTGCAATC  1893
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2606  GACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGCCCGACAAATTCATTATCCCAGGATCTCCTGCAATC  2679

Query 1894  ATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAAAGTGACTTCATAACCTTCGGCAAAAAGGAGGA  1967
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2680  ATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAAAGTGACTTCATAACCTTCGGCAAAAAGGAGGA  2753

Query 1968  GACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACTG  2041
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2754  GACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACTG  2827

Query 2042  ACAACAGTGACCAG  2055
            ||||||||||||||
Sbjct 2828  ACAACAGTGACCAG  2841

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.