Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_03707
- Subject:
- NM_018908.3
- Aligned Length:
- 2872
- Identities:
- 1742
- Gaps:
- 881
Alignment
Query 1 ATGGT---TTCC---AGATGTAG-CTGCCTGGGGGTCCAGTGT-CTGCTGCTCTCGCTTCTTCTCCTCGCAGCC 66
||||| |||| |||.|.|| || |||.|||.|..| ||||||||||.| ||||||||.||...|
Sbjct 1 ATGGTATATTCCCGGAGAGGAAGTCT-----GGGATCCCGGCTCCTGCTGCTCTGG---CTTCTCCTTGCCTAC 66
Query 67 TGGGAGGTGGGGAGCGGCCAGCTCCACTACTCAGTCTACGAGGAGGCCAGACACGGCACCTTCGTGGGCCGCAT 140
|||.|||..|||||||||||||||||||||||..||...|||||.||||.||||||.||||||||.||||||||
Sbjct 67 TGGAAGGCAGGGAGCGGCCAGCTCCACTACTCGATCCCGGAGGAAGCCAAACACGGAACCTTCGTTGGCCGCAT 140
Query 141 CGCGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCAGCGCCTGTTCCGGGTGGCGTCCAAAAGACACGGGG 214
||||||||||||.|||||||||||||||||||||||||.||||||||||||||||||||||||..|.|.|||||
Sbjct 141 CGCGCAGGACCTAGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCCGGGTGGCGTCCAAGGGCCGCGGGG 214
Query 215 ACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATTGACCGCGAGGAGCTGTGCGGG 288
||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||.||||||||||||.||
Sbjct 215 ACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGGGAGGAGCTGTGCCGG 288
Query 289 CGGAGCGTGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCATGTGGACGTGGA 362
|||||.|.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||.
Sbjct 289 CGGAGGGCGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCATGTGGAGGTGGC 362
Query 363 AGTGAAGGACATTAACGACAACCCGCCCAGGTTCTCCGTAACAGAACAAAAGCTCTCAATACCT----GAATCC 432
||||||||||||.||.|||||.|||||||||||||||..|..||||||||...| ||.|.| ||.||.
Sbjct 363 AGTGAAGGACATCAATGACAATCCGCCCAGGTTCTCCAGACAAGAACAAAGATT----ATTCATTTTAGAGTCA 432
Query 433 AGACTGCTTGACTCTCGATTTCCACTAGAAGGCGCATCTGATGCGGATGTTGGAGAGAACGC---ATTGCTTAC 503
|||.|||..||.||.||.|||||.|||||.|||||.||.|||..||||.||||||..||.|| |||| |.
Sbjct 433 AGAATGCCAGATTCGCGGTTTCCGCTAGAGGGCGCGTCGGATTTGGATATTGGAGCAAATGCACAATTG---AG 503
Query 504 TTACAAACTCAGTCCAAATGAGTATTTTGTTCTT-GATATTATAAACAAA-AAAGACAAAGAC-AAATTCCCAG 574
.||||...|.|.||||||.||.||||||| .||| |||.||| ||||||| .|||| |.|.|| ||.||...||
Sbjct 504 ATACAGGTTAAATCCAAACGAATATTTTG-ACTTAGATGTTA-AAACAAATGAAGA-AGAAACGAACTTTTTAG 574
Query 575 TGCTTGTTCTGCGGAA--GCTGCTGGATCGTGAAGAAAATCCTCAGCTAAAG--------TTGTTGTTGACAGC 638
.|||.|||.||.|||| .|| |.|||.|.||||||| |..||| ||.||..|||..||
Sbjct 575 AGCTGGTTTTGAGGAAATCCT--TAGATAGAGAAGAAA--------CACAAGAACACCGTTTATTAGTGATTGC 638
Query 639 AACTGATGGAGGCAAACCTGAATTTACCGGATCTGTTTCTCTGCTGATCCTGGTGTTAGATGCCAATGATAACG 712
||||||||||||.|||||.|||.|.||.||..|.|||....||.|||||...||.||.|||||.||||||||||
Sbjct 639 AACTGATGGAGGAAAACCCGAACTAACAGGTACAGTTCAGTTGTTGATCAATGTATTGGATGCTAATGATAACG 712
Query 713 CCCCTATCTTTGACAGACCGGTTTATGAAGTTAAGA-TGTATGAAAATCAAGTGAACCAA-----ACATTAGTA 780
||||....|||||.|.|.|..||||| ||..|.||| |||..||||| ||.||||| ||||||||.
Sbjct 713 CCCCAGAATTTGATAAATCCATTTAT-AATGTCAGATTGTTGGAAAA-----TGCACCAAGTGGGACATTAGTT 780
Query 781 ATACGGCTCAACGCTTCTGATTCGGATGAAGGAATAAACAAGGAAATGATGTATTCATTTAG--CTCT-----T 847
||....||.|||||.||.|||.|.|||||.||.||.||.||||||||..||||||..||||| .||| |
Sbjct 781 ATTAAACTGAACGCCTCAGATGCAGATGAGGGCATCAATAAGGAAATAGTGTATTTCTTTAGTAATCTTGTTCT 854
Query 848 TGGTCCCACCCACGATAAGAAG--GAAATTTTGGATAAA--CGAAAGGACGGGAGAAATAAAAGTAAATGATGC 917
|| |||||...||| .||||||...||.|| |.|| .||.||.|||||||||||.||.|..|.
Sbjct 855 TG---------ACGATGTAAAGTCCAAATTTATAATTAATTCTAA--TACTGGTGAAATAAAAGTTAACGGGGA 917
Query 918 TATTGACTTTGAGGACAGTAACACTTATGAAATTCATGTAGATGTTACAGATAAGGGAAA-------CCCACCT 984
..|.||.|.|||.|||..||||.|.|||||||||.||.|.||||..|..|||| ||| ||||
Sbjct 918 ACTGGATTATGAAGACTATAACTCATATGAAATTAATATTGATGCCATGGATA----AAAGTACATTCCCA--- 984
Query 985 ATGGTT----GGTCACTGCACGGTCCTAGTGGAACTACTGGATGAAAATGATAATTCACCTGAGGTGATTGTCA 1054
|| ||.|||||.|..||..|||||.||||.|||||||..|||||||||.|.||.|| |||.|.||
Sbjct 985 ----TTATCAGGACACTGTAAAGTAGTAGTGAAACTCCTGGATGTGAATGATAATACCCCAGA---GATGGCCA 1051
Query 1055 --------CTTCTCTGTCTCTCCCAGTGAAAGAAGATGCTCAAGTGGGCACCGTCATTGCCCTAATCAGCGTTT 1120
|||.|| ||.||.||.|||||.||.||||.|.|..||||.||||||||.||.||||||||.|
Sbjct 1052 TAACCACCCTTTTC-----CTGCCTGTCAAAGAGGACGCTCCACTCAGCACGGTCATTGCTCTGATCAGCGTGT 1120
Query 1121 CTGACCATGATTCAGGAGCCAACGGACAGGTCACCTGCTCTCTGACGCCTCACGTTCCGTTCAAGCTGGTGTCC 1194
||||||.|||.|||||.||||||||.|||||.||||||||.||.|.|||.||||||||.|||||||||||||||
Sbjct 1121 CTGACCGTGACTCAGGTGCCAACGGGCAGGTGACCTGCTCCCTAATGCCCCACGTTCCCTTCAAGCTGGTGTCC 1194
Query 1195 ACCTACAAGAATTACTACTCATTGGTGCTGGACAGCGCTCTGGACCGCGAGAGGGTGTCGGCCTATGAGCTGGT 1268
||||.|||||||||||||||.|||||||||||||||||.||||||||||||||.|||||||.||||||||||||
Sbjct 1195 ACCTTCAAGAATTACTACTCGTTGGTGCTGGACAGCGCCCTGGACCGCGAGAGCGTGTCGGTCTATGAGCTGGT 1268
Query 1269 GGTGACCGCGCGGGACGGGGGCTCGCCTCCGCTGTGGGCCACGGCCAGCGTGTCTGTGGAGGTGGCCGACGTGA 1342
||||||||||||||||||||||||||||.|||||||||||||.|||||||||||||||||.|||||||||||||
Sbjct 1269 GGTGACCGCGCGGGACGGGGGCTCGCCTTCGCTGTGGGCCACCGCCAGCGTGTCTGTGGAAGTGGCCGACGTGA 1342
Query 1343 ACGACAACGCGCCTGCGTTCGCGCAGTCCGAGTACACGGTGTTCGTGAAGGAGAACAACCCGCCAGGCTGCCAC 1416
||||||||||.||.||||||||||||.||.||||.||.||||||||||||||||||||||||||||||||||||
Sbjct 1343 ACGACAACGCTCCGGCGTTCGCGCAGCCCCAGTATACCGTGTTCGTGAAGGAGAACAACCCGCCAGGCTGCCAC 1416
Query 1417 ATCTTCACGGTGTCTGCGTGGGACGCGGACGCGCAGGAGAACGCCCTGGTGTCCTACTCTCTGGTGGAGCGGCG 1490
|||||||||||||||||..||||||||||||||||||||||||||||||||||||||||.||||||||||||||
Sbjct 1417 ATCTTCACGGTGTCTGCACGGGACGCGGACGCGCAGGAGAACGCCCTGGTGTCCTACTCGCTGGTGGAGCGGCG 1490
Query 1491 GTTGGGCGAGCGCTCGCTGTCGAGCTACGTGTCGGTGCACGCGGAGAGCGGCAAGGTGTACGCGCTGCAGCCGC 1564
|.|||||||||||.||||||||||.|||||.|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 GGTGGGCGAGCGCCCGCTGTCGAGTTACGTTTCGGTGCACGCGGAGAGCGGCAAGGTGTACGCGCTGCAGCCGC 1564
Query 1565 TGGACCACGAGGAGCTGGAGCTGCTACAGTTCCAG--------------------------------------- 1599
|||||||||||||..||||||||||.|||||||||
Sbjct 1565 TGGACCACGAGGAAGTGGAGCTGCTGCAGTTCCAGGTGAGCGCGCGCGACGCGGGCGTGCCGCCTCTGGGCAGC 1638
Query 1600 -------------------------------------------------------------------------- 1599
Sbjct 1639 AACGTGACGCTGCAGGTGTTCGTGCTGGACGAGAACGACAACGCGCCGGCGCTGCTGGTGCCTCGAGTGGGTGG 1712
Query 1600 -------------------------------------------------------------------------- 1599
Sbjct 1713 CACCGGCGGCGCAGTGAGCGAGCTGGTGCCGAGGTCAGTGGGTGCGGGCCACGTGGTGGCGAAGGTGCGCGCAG 1786
Query 1600 -------------------------------------------------------------------------- 1599
Sbjct 1787 TGGACCCTGATTCGGGCTACAACGCTTGGCTTTCGTATGAGCTGCAGCCAGCGCCTGGCAGTGCGCGCATCCCG 1860
Query 1600 -------------------------------------------------------------------------- 1599
Sbjct 1861 TTCCGCGTGGGGCTGTACACAGGCGAGATCAGCACAACACGCTCTCTGGATGAGACCGAAGCACCGCGCCACCG 1934
Query 1600 -------------------------------------------------------------------------- 1599
Sbjct 1935 CCTTCTGGTGCTGGTGAAGGACCATGGAGAGCCCCCGCTGACAGCCACAGCCACAGTGCTGGTGTCGCTGGTGG 2008
Query 1600 -------------------------------------------------------------------------- 1599
Sbjct 2009 AAAGTGGCCAGGCGCCGAAGGCCTCATCGCGGGCGTCGGCGGGCGCTGTGGGTCCCGAGGCTGCCCTGGTGGAT 2082
Query 1600 -------------------------------------------------------------------------- 1599
Sbjct 2083 GTCAACGTGTACCTGATCATCGCCATCTGTGCGGTGTCCAGCCTGCTGGTGCTCACGCTGCTGCTGTACACCGC 2156
Query 1600 -------------------------------------------------------------------------- 1599
Sbjct 2157 GCTGCGGTGCTCGGCGCAGCCCACCGAGGCCGTGTGCACACGGGGCAAGCCCACTCTGTTGTGCTCCAGCGCGG 2230
Query 1600 -------------------------------------------------------------------------- 1599
Sbjct 2231 TGGGGAGCTGGTCGTACTCGCAGCAGAGGAGACAGAGGGTGTGCTCTGGGGAAGCTCCACCCAAAACAGACCTC 2304
Query 1600 ------------------------------------------------CCACGACAGCCCAACCCTGACTGGCG 1625
||||||||||||||||||||||||||
Sbjct 2305 ATGGCCTTCAGTCCAAGCCTTCCTCAGGGTCCCACCTCTACAGACAACCCACGACAGCCCAACCCTGACTGGCG 2378
Query 1626 TTACTCTGCCTCCCTGAGAGCAGGCATGCACAGCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTC 1699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2379 TTACTCTGCCTCCCTGAGAGCAGGCATGCACAGCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTC 2452
Query 1700 CAGGAGGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCT 1773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2453 CAGGAGGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCT 2526
Query 1774 CCAGTCGGTGCGGGTGTCAACAGCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCC 1847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2527 CCAGTCGGTGCGGGTGTCAACAGCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCC 2600
Query 1848 CGGTGAGTTGCCCGACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACA 1921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2601 CGGTGAGTTGCCCGACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACA 2674
Query 1922 GCCAAATTGACAAAAGTGACTTCATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAG 1995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2675 GCCAAATTGACAAAAGTGACTTCATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAG 2748
Query 1996 GGTAACAAGACCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACTGACAACAGTGACCAG 2055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2749 GGTAACAAGACCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACTGACAACAGTGACCAG 2808
