Nucleotide Global Alignment

Description

• Query: ccsbBroad304_03707
• Subject: NM_031849.3
• Aligned Length: 2108
• Identities: 1750
• Gaps: 103

Alignment

Query    1  ATGGTTT-----CCAGATG-TAGCTGCCTGGGGGTCCAGTGTCTGCTGCTCTCGCTTCTTCTCCTCGCAGCCTG  68
            |||||.|     ||.||.| |||.|   ||||....||.||||||||.|||.|||||||.||||||||||||||
Sbjct    1  ATGGTGTTTACCCCGGAGGATAGAT---TGGGAAAGCAATGTCTGCTCCTCCCGCTTCTGCTCCTCGCAGCCTG  71

Query   69  GGAGGTGGGGAGCGGCCAGCTCCACTACTCAGTCTACGAGGAGGCCAGACACGGCACCTTCGTGGGCCGCATCG  142
            |.||||||||||||||||||||||||||||.||...|||||||||||.|||||||||||||||||||||.||||
Sbjct   72  GAAGGTGGGGAGCGGCCAGCTCCACTACTCCGTACCCGAGGAGGCCAAACACGGCACCTTCGTGGGCCGGATCG  145

Query  143  CGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCAGCGCCTGTTCCGGGTGGCGTCCAAAAGA-CACGGGGA  215
            ||||||||||||||||||||||||||||||||||||.||||||||||.||.||||.||| ||||| |.||.|||
Sbjct  146  CGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCAGGATGGCCTCC-AAAGACCGCGAGGA  218

Query  216  CCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATTGACCGCGAGGAGCTGTGCGGGC  289
            |||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||
Sbjct  219  CCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGCGAGGAGCTGTGCGGGC  292

Query  290  GGAGCGTGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCATGTGGACGTGGAA  363
            ||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.
Sbjct  293  GGAGCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCATGTGGACGTGGAG  366

Query  364  GTGAAGGACATTAACGACAACCCGCCCAGGTTCTCCGTAACAGAACAAA-AGCTCTCA-ATACCTGAATCCAGA  435
            ||||.||||||||||||||||||||||..||||.|.|||...||||||| ||..||.| .|||  |||||.||.
Sbjct  367  GTGAGGGACATTAACGACAACCCGCCCTTGTTCCCGGTAGAGGAACAAAGAGTGCTGATTTAC--GAATCTAGG  438

Query  436  CTGCTTGACTCTCGATTTCCACTAGAAGGCGCATCTGATGCGGATGTTGGAGAGAACGC--ATTGC----TTAC  503
            ||||..||.|||...||||||||.||.|||||.||.|||||.||||||||      |.|  |||.|    |.||
Sbjct  439  CTGCCAGATTCTGTGTTTCCACTGGAGGGCGCGTCCGATGCAGATGTTGG------CTCAAATTCCATCTTAAC  506

Query  504  TTACAAACTCAGTCCAAATGAGTATTTTGTTCTTGAT---ATTATAAACAAAAAAGACAA-AGACAAATTCCCA  573
            .||.|||||||||.|.|..||.||.||.|..||.|||   |..|||||||...|.||||| |.|||||||    
Sbjct  507  CTATAAACTCAGTTCTAGCGAATACTTCGGGCTAGATGTGAAAATAAACAGTGATGACAATAAACAAATT----  576

Query  574  GTG--CTTGTTCTGCGGAAG-----CTGCTGGATCGTGAAGAAAATCCT-CAGCTAAAGTTGTTGTTGACAGCA  639
            |.|  |||.||     .|||     ||  ||||..|.||.|||..|||| || |..||.||.||..|||||||.
Sbjct  577  GGGCTCTTATT-----AAAGAAATCCT--TGGACAGAGAGGAAGCTCCTGCA-CACAACTTATTCCTGACAGCC  642

Query  640  ACTGATGGAGGCAAACCTGAATTTACCGGATCTGTTTCTCTGCTGATCCTGGTGTTAGATGCCAATGATAACGC  713
            ||.|||||.|||||||||||..|.||.||..|||||...||||||.||...|||.|.||||..||||||||.||
Sbjct  643  ACAGATGGGGGCAAACCTGAGCTCACAGGCACTGTTCAGCTGCTGGTCACAGTGCTGGATGTGAATGATAATGC  716

Query  714  CCCTATCTTT--GACAGACCGGTTTATGAAGTTAAGATGTAT--GAAAATCAAGTGAACCAAACATTAGTAATA  783
            .||.| ||||  .|||| .|.|..||.|||| ||||| .|||  ||||||..||..|||..||||..|||.||.
Sbjct  717  TCCCA-CTTTCGAACAG-TCTGAATACGAAG-TAAGA-ATATTCGAAAATGCAGACAACGGAACAACAGTTATC  786

Query  784  CGGCTCAACGCTTCTGATTCGGATGAAGGAATAAACAAGGAAATGATGTATTCATT---TAGCTCTTTGGTCCC  854
            .|.||.||.|||||||||..||||||||||...||...||.|||....|||||.||   |||| |||  ||..|
Sbjct  787  AGACTGAATGCTTCTGATCGGGATGAAGGAGCGAATGGGGCAATTTCATATTCTTTTAATAGC-CTT--GTTGC  857

Query  855  ACCCACGATAA--GAAGGAAATTTTGGATA-AACGAAAGGACGGGAGAAATAAAAGTAAATGATGC-------T  918
            |.|||.|.|.|  ||  ..|.|||.|.||| |.||||| .|||||||||||       |.||||.|       |
Sbjct  858  AGCCATGGTTATTGA--CCACTTTAGCATAGATCGAAA-TACGGGAGAAAT-------AGTGATTCGGGGTAAT  921

Query  919  ATTGACTTTGAGGACAGTAACACTTAT--GAAAT--TCATGTAGATGTTACAGATAAGGGAAACCCACCTATGG  988
            .|.||.|||||  |||..||.||||||  .||||  |||  |.||.|..||.||.||.||..|.||.||.||||
Sbjct  922  TTGGATTTTGA--ACAAGAAAACTTATACAAAATCCTCA--TTGACGCCACGGACAAAGGCCATCCTCCCATGG  991

Query  989  TTGGTCACTGCACGGTCCTAGTG-GAACTACTGGATGAAAATGATAA-TTCACCTGAGGTGATTG---TCACTT  1057
            ..|||||.|||||.||..||||| ||| |..|||||.|||||||||| .|| |||||   |||.|   |.||||
Sbjct  992  CGGGTCATTGCACCGTTTTAGTGAGAA-TTTTGGATAAAAATGATAACGTC-CCTGA---GATAGCACTGACTT  1060

Query 1058  CTCTGTCTCTCCCAGTGAAAGAAGATGCTCAAGTGGGCACCGTCATTGCCCTAATCAGCGTTTCTGACCATGAT  1131
            |..|.||..|.||.||....|||||.||||||.|.||.||.|||||.||||||||.|||||....||||..|||
Sbjct 1061  CCTTATCCTTGCCTGTACGTGAAGACGCTCAATTTGGTACTGTCATCGCCCTAATTAGCGTGAACGACCTCGAT  1134

Query 1132  TCAGGAGCCAACGGACAGGTCACCTGCTCTCTGACGCCTCACGTTCCGTTCAAGCTGGTGTCCACCTACAAGAA  1205
            |||||.||||||||.|||||.|.||||||.||||||||||||||.||.|||||||||||||||||||.||||||
Sbjct 1135  TCAGGTGCCAACGGGCAGGTGAACTGCTCGCTGACGCCTCACGTCCCTTTCAAGCTGGTGTCCACCTTCAAGAA  1208

Query 1206  TTACTACTCATTGGTGCTGGACAGCGCTCTGGACCGCGAGAGGGTGTCGGCCTATGAGCTGGTGGTGACCGCGC  1279
            |||||||||.||||||||||||||.||.||||||||||||||.|||||||||||||||.|||||||.|||||||
Sbjct 1209  TTACTACTCGTTGGTGCTGGACAGTGCCCTGGACCGCGAGAGCGTGTCGGCCTATGAGTTGGTGGTAACCGCGC  1282

Query 1280  GGGACGGGGGCTCGCCTCCGCTGTGGGCCACGGCCAGCGTGTCTGTGGAGGTGGCCGACGTGAACGACAACGCG  1353
            |||||||||||||||||.|||||||||||||.||||||.||||||||||||||||||||.||||.|||||.||.
Sbjct 1283  GGGACGGGGGCTCGCCTTCGCTGTGGGCCACCGCCAGCTTGTCTGTGGAGGTGGCCGACATGAATGACAATGCT  1356

Query 1354  CCTGCGTTCGCGCAGTCCGAGTACACGGTGTTCGTGAAGGAGAACAACCCGCCAGGCTGCCACATCTTCACGGT  1427
            ||.||||||||||||.||||||||||.||||||||||||||||||||||||||.||||||||||||||||||||
Sbjct 1357  CCGGCGTTCGCGCAGCCCGAGTACACAGTGTTCGTGAAGGAGAACAACCCGCCGGGCTGCCACATCTTCACGGT  1430

Query 1428  GTCTGCGTGGGACGCGGACGCGCAGGAGAACGCCCTGGTGTCCTACTCTCTGGTGGAGCGGCGGTTGGGCGAGC  1501
            |||||||.|.|||||||||||||||||||||||.||||||||||||||.|||||||||||||||.|||||||||
Sbjct 1431  GTCTGCGCGAGACGCGGACGCGCAGGAGAACGCGCTGGTGTCCTACTCGCTGGTGGAGCGGCGGGTGGGCGAGC  1504

Query 1502  GCTCGCTGTCGAGCTACGTGTCGGTGCACGCGGAGAGCGGCAAGGTGTACGCGCTGCAGCCGCTGGACCACGAG  1575
            ||.||.|||||||||||.|.||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1505  GCGCGTTGTCGAGCTACATTTCGGTGCACGCGGAGAGCGGCAAGGTGTACGCGCTGCAGCCGCTGGACCACGAG  1578

Query 1576  GAGCTGGAGCTGCTACAGTTCCAGCCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAGG  1649
            |||||.||||||||.|||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1579  GAGCTAGAGCTGCTGCAGTTTCAGCCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAGG  1652

Query 1650  CATGCACAGCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGC  1723
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1653  CATGCACAGCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGC  1726

Query 1724  CAACAGTATCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACAGC  1797
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1727  CAACAGTATCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACAGC  1800

Query 1798  AACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGCCCGACAAATTCAT  1871
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1801  AACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGCCCGACAAATTCAT  1874

Query 1872  TATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAAAGTGACTTCA  1945
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1875  TATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAAAGTGACTTCA  1948

Query 1946  TAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAA  2019
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1949  TAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAA  2022

Query 2020  GAGAAAGGGAACAGCACGACTGACAACAGTGACCAG  2055
            ||||||||||||||||||||||||||||||||||||
Sbjct 2023  GAGAAAGGGAACAGCACGACTGACAACAGTGACCAG  2058