Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_03707
- Subject:
- NM_031857.1
- Aligned Length:
- 2915
- Identities:
- 1735
- Gaps:
- 925
Alignment
Query 1 ATGGTTTCC-----------AGATGTAGCTGCCTGGGGGTCCAGTGTCTGCTGCTCTCGCTTCTTCTCCTCGCA 63
|||.|.|.| |||| ||.|.|||| |||..|||.||||||||||||||..||||||||
Sbjct 1 ATGTTATACTCAAGTCGAGGAGAT-------CCAGAGGGT-CAGCCTCTACTGCTCTCGCTTCTGATCCTCGCA 66
Query 64 GCCTGGGAGGTGGGGAGCGGCCAGCTCCACTACTCAGTCTACGAGGAGGCCAGACACGGCACCTTCGTGGGCCG 137
...||||.|||||||||||||||||||||||||||.|||...|||||.|||..|||||||||||||||||||||
Sbjct 67 ATGTGGGTGGTGGGGAGCGGCCAGCTCCACTACTCCGTCCCGGAGGAAGCCGAACACGGCACCTTCGTGGGCCG 140
Query 138 CATCGCGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCAGCGCCTGTTCCGGGTGGCGTCCAAAAGACACG 211
|||||||||||||||||||||||||||||||||||||||||.|||||||||||.|.|||..||||||.|.|.||
Sbjct 141 CATCGCGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCCAGTTGGATTCCAAAGGCCGCG 214
Query 212 GGGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATTGACCGCGAGGAGCTGTGC 285
|||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||
Sbjct 215 GGGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGCGAGGAGCTGTGC 288
Query 286 GGGCGGAGCGTGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCATGTGGACGT 359
||||||||||.||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||
Sbjct 289 GGGCGGAGCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTAGACAGGCCGCTGCAGGTTTTCCATGTGGACGT 362
Query 360 GGAAGTGAAGGACATTAACGACAACCCGCCCAG-GTTCTCCGTAACAGAACAAAAGCTCTCAATACCTGAATCC 432
|||.||||||||||||||||||||||| .|||| ||||.|.|..|||.||.|.||.||.|..||..|.||||||
Sbjct 363 GGAGGTGAAGGACATTAACGACAACCC-TCCAGTGTTCCCAGCGACACAAAAGAATCTGTTCATCGCGGAATCC 435
Query 433 AGACTGCTTGACTCTCGATTTCCACTAGAAGGCGCATCTGATGCGGATGTTGGAGAGAACGCATTGCTTACTTA 506
||.|.||||||||||||.|||||||||||.|||||.||.|||||.|||.|.||.||||||||..||||.|||||
Sbjct 436 AGGCCGCTTGACTCTCGGTTTCCACTAGAGGGCGCGTCCGATGCAGATATCGGGGAGAACGCCCTGCTCACTTA 509
Query 507 CAAACTCAGTCCAAATGAGTATTTTGTTCTTGATATTATAAACAAAAAAGACAA--AGACAAATTCCCAG---- 574
||.|||.||.||.|||||||||||..|.||.||..| |.||| || ||| ||||
Sbjct 510 CAGACTGAGCCCCAATGAGTATTTCTTCCTGGACGT-------------GCCAACCAG-CAA----CCAGCAGG 565
Query 575 ----------TG--CTTGTTCTGCGGAAGCTGCTGGATCGTGAAGAAAATCCTCAGCTAAAGTTGTTGTTGACA 636
|| |||||..|.|||||.||..|.||..|.|||||||.|||..||||..|.||.|||.|.||.
Sbjct 566 TAAAACCTCTTGGACTTGTATTACGGAAACTTTTAGACAGAGAAGAAACTCCGGAGCTTCATTTATTGCTCACG 639
Query 637 GCAACTGATGGAGGCAAACCTGAATTTACCGGATCTGTTTCTCTGCTGATCCTGGTGTTAGATGCCAATGATAA 710
||.||.||||||||||||||.||..|.||.||..|.|||....|.||.|||..|||..|.||...||||||.||
Sbjct 640 GCCACCGATGGAGGCAAACCCGAGCTGACTGGCACCGTTCAATTACTCATCACGGTACTGGACAACAATGACAA 713
Query 711 CGCCCCTATCTTTGACAGA--CCGGTTTA---TGAAGTTAAGATGTATGAAAA----TCAAGTGAACCAAACAT 775
.|||||..|.||.|||||| ||.||.|| ||||.|||..| ||||| || .|.|..|||..
Sbjct 714 TGCCCCAGTGTTCGACAGAACCCTGTATACGGTGAAATTACCA-----GAAAACGTTTC----TATCGGAACGC 778
Query 776 TAGTAATACGGCTCAACGCTTCTGATTCGGATGAAGGAATAAACAAGGAAATGATGTATTCATTTAGCTC---- 845
|.||.||.|..|.|||.||.||.||||..||.|||||..|.||...|||.||.||.||.||.|| |||
Sbjct 779 TGGTGATTCACCCCAATGCCTCAGATTTAGACGAAGGCTTGAATGGGGATATTATTTACTCCTT---CTCCAGT 849
Query 846 ----TTTGGTC-CCACCCACGATA-AGAAGGAAATTT-----TGGA-----TAAACGAAAGGACG-GGAGAAAT 902
|| || ||| |||| |.||...||.|| |||| ||| | ||.|.|||
Sbjct 850 GATGTT---TCTCCA-----GATATAAAATCCAAGTTCCACATGGACCCCTTAA----------GTGGGGCAAT 905
Query 903 AAAAGT-AAATGATGC-TATTGACTTTGAGGACAGTA----ACACTTATGAA-ATTCATGTAGATGTTACAGAT 969
.|.||| |.|.|| | |||.||.|||||.||.|||| |||| || ||.|..||.||.|.|...|||
Sbjct 906 CACAGTGATAGGA--CATATGGATTTTGAAGAAAGTAGAGCACAC-----AAGATCCCAGTCGAGGCTGTCGAT 972
Query 970 AAGGGAAACCCACCTATGGTTGGTCACTGCACGGTCCTAGTGGAACTACTGGATGAAAATGATAATTCACCTGA 1043
||.||...||||||..|||.||||||.||.||..|.||.||||||.|..||||||.||||||.|||.|.||..|
Sbjct 973 AAAGGCTTCCCACCCCTGGCTGGTCATTGTACACTTCTTGTGGAAGTTGTGGATGTAAATGACAATGCTCCACA 1046
Query 1044 GGTGATTGTCACTTCTCTGTCTCTCCCAGTGAAAGAAGATGCTCAAGTGGGCACCGTCATTGCCCTAATCAGCG 1117
|.|||.|.|||...|.||.||..|.||.||.|||||.||.||.|||.||||.||.||.||||||||.||.||.|
Sbjct 1047 GTTGACTATCAAAACGCTCTCGGTTCCTGTAAAAGAGGACGCACAACTGGGGACAGTTATTGCCCTGATTAGTG 1120
Query 1118 T-TTCTGACCATGATTCAGGAGCCAACGGACAGGTCACCTGCTCTCTGACGCCTCACGTTCCGTTCAAGCTGGT 1190
| .|| ||||..||..|||..||||||||.|||||.||||||||.||||||||.|||||.||.|||||||||||
Sbjct 1121 TGATC-GACCTAGACGCAGATGCCAACGGGCAGGTTACCTGCTCCCTGACGCCCCACGTCCCCTTCAAGCTGGT 1193
Query 1191 GTCCACCTACAAGAATTACTACTCATTGGTGCTGGACAGCGCTCTGGACCGCGAGAGGGTGTCGGCCTATGAGC 1264
||||||||||||||||||||||||.||||||||||||||.|||||||||||||||||.|||||.|||||.||||
Sbjct 1194 GTCCACCTACAAGAATTACTACTCGTTGGTGCTGGACAGAGCTCTGGACCGCGAGAGTGTGTCCGCCTACGAGC 1267
Query 1265 TGGTGGTGACCGCGCGGGACGGGGGCTCGCCTCCGCTGTGGGCCACGGCCAGCGTGTCTGTGGAGGTGGCCGAC 1338
|||||||.||||||||||||||||||||||||.|.|||||||||||||||||.|||||||||||||||||||||
Sbjct 1268 TGGTGGTTACCGCGCGGGACGGGGGCTCGCCTTCACTGTGGGCCACGGCCAGGGTGTCTGTGGAGGTGGCCGAC 1341
Query 1339 GTGAACGACAACGCGCCTGCGTTCGCGCAGTCCGAGTACACGGTGTTCGTGAAGGAGAACAACCCGCCAGGCTG 1412
||||||||||||||.||.||||||||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 1342 GTGAACGACAACGCACCAGCGTTCGCGCAGTCCGAGTACACGGTGTTCGTGAAGGAGAACAACCCGCCGGGCTG 1415
Query 1413 CCACATCTTCACGGTGTCTGCGTGGGACGCGGACGCGCAGGAGAACGCCCTGGTGTCCTACTCTCTGGTGGAGC 1486
||||||||||||||||||||||.|||||||.||||||||||||||||||||||||||||||||.||||||||||
Sbjct 1416 CCACATCTTCACGGTGTCTGCGCGGGACGCTGACGCGCAGGAGAACGCCCTGGTGTCCTACTCGCTGGTGGAGC 1489
Query 1487 GGCGGTTGGGCGAGCGCTCGCTGTCGAGCTACGTGTCGGTGCACGCGGAGAGCGGCAAGGTGTACGCGCTGCAG 1560
|||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||
Sbjct 1490 GGCGGTTGGGCGAGCGCTCGCTGTCGAGCTACGTGTCAGTGCACGCGGAGAGCGGCAAGGTGTACGCGCTGCAG 1563
Query 1561 CCGCTGGACCACGAGGAGCTGGAGCTGCTACAGTTCC------------------------------------- 1597
|||.|||||||||||||||||||||||||||||||||
Sbjct 1564 CCGTTGGACCACGAGGAGCTGGAGCTGCTACAGTTCCAGGTGAGCGCGCGCGACGCGGGCGTGCCGCCTCTGGG 1637
Query 1598 -------------------------------------------------------------------------- 1597
Sbjct 1638 CAGCAACGTGACGCTGCAGGTGTTCGTGCTGGACGAGAACGACAATGCGCCGGCGCTGCTGACACCTCGGATGA 1711
Query 1598 -------------------------------------------------------------------------- 1597
Sbjct 1712 GGGGCACTGACGGCGCAGTGAGCGAGATGGTGCTGCGGTCGGTGGGCGCCGGCGTAGTGGTGGGGAAGGTGCGC 1785
Query 1598 -------------------------------------------------------------------------- 1597
Sbjct 1786 GCAGTGGACGCCGACTCGGGCTACAACGCGTGGCTTTCATACGAGCTGCAGCCAGAAACGGCCAGCGCGAGCAT 1859
Query 1598 -------------------------------------------------------------------------- 1597
Sbjct 1860 CCCGTTCCGCGTGGGGCTGTACACGGGCGAGATCAGCACAACGCGTGCCCTGGACGAAACGGACGCACCGCGCC 1933
Query 1598 -------------------------------------------------------------------------- 1597
Sbjct 1934 AGCGCCTACTGGTGCTGGTGAAAGACCACGGGGAGCCAGCGCTGACGGCCACGGCCACTGTGCTGGTGTCGCTG 2007
Query 1598 -------------------------------------------------------------------------- 1597
Sbjct 2008 GTGGAGAGCGGCCAGGCGCCAAAGTCATCGTCGCGGGCGTCAGTGGGTGCCACGGGCCCCGAGGTGACGCTGGT 2081
Query 1598 -------------------------------------------------------------------------- 1597
Sbjct 2082 GGATGTCAACGTGTACCTGATCATCGCCATCTGCGCGGTGTCTAGCCTGTTGGTTCTCACGCTGCTGCTGTACA 2155
Query 1598 -------------------------------------------------------------------------- 1597
Sbjct 2156 CTGTGCTGCGGTGCTCGGCGATGCCCACCGAGGGCGAGTGCGCGCCTGGCAAGCCGACGCTGGTGTGTTCTAGC 2229
Query 1598 -------------------------------------------------------------------------- 1597
Sbjct 2230 GCGGTGGGGAGTTGGTCGTACTCGCAGCAGAGGAGGCAGAGGGTGTGCTCTGGCGAGGGTAAGCAGAAGACCGA 2303
Query 1598 -------------------------------------------------------------------------- 1597
Sbjct 2304 CCTCATGGCCTTCAGCCCGGGCCTTTCTCCTTGTGCTGGATCTACAGAGCGAACGGGAGAACCCTCTGCTTCCT 2377
Query 1598 ---------------AGCCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCAC 1656
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2378 CAGATTCAACTGGGAAGCCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCAC 2451
Query 1657 AGCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGT 1730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2452 AGCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGT 2525
Query 1731 ATCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACAGCAACAGCT 1804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2526 ATCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACAGCAACAGCT 2599
Query 1805 GGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGCCCGACAAATTCATTATCCCA 1878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2600 GGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGCCCGACAAATTCATTATCCCA 2673
Query 1879 GGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAAAGTGACTTCATAACCTT 1952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2674 GGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAAAGTGACTTCATAACCTT 2747
Query 1953 CGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAG 2026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2748 CGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAG 2821
Query 2027 GGAACAGCACGACTGACAACAGTGACCAG 2055
|||||||||||||||||||||||||||||
Sbjct 2822 GGAACAGCACGACTGACAACAGTGACCAG 2850
