Nucleotide Global Alignment

Description

• Query: ccsbBroad304_03707
• Subject: NM_031859.3
• Aligned Length: 2626
• Identities: 1877
• Gaps: 665

Alignment

Query    1  ATGGTTTCCAGATGTAGCTGCCTGGGGGTCCAGTGTCTGCTGCTCTCGCTTCTTCTCCTCGCAGCCTGGGAGGT  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGTTTCCAGATGTAGCTGCCTGGGGGTCCAGTGTCTGCTGCTCTCGCTTCTTCTCCTCGCAGCCTGGGAGGT  74

Query   75  GGGGAGCGGCCAGCTCCACTACTCAGTCTACGAGGAGGCCAGACACGGCACCTTCGTGGGCCGCATCGCGCAGG  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  GGGGAGCGGCCAGCTCCACTACTCAGTCTACGAGGAGGCCAGACACGGCACCTTCGTGGGCCGCATCGCGCAGG  148

Query  149  ACCTGGGGCTGGAGCTGGCGGAGCTGGTGCAGCGCCTGTTCCGGGTGGCGTCCAAAAGACACGGGGACCTTCTG  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  ACCTGGGGCTGGAGCTGGCGGAGCTGGTGCAGCGCCTGTTCCGGGTGGCGTCCAAAAGACACGGGGACCTTCTG  222

Query  223  GAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATTGACCGCGAGGAGCTGTGCGGGCGGAGCGT  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATTGACCGCGAGGAGCTGTGCGGGCGGAGCGT  296

Query  297  GGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCATGTGGACGTGGAAGTGAAGG  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCATGTGGACGTGGAAGTGAAGG  370

Query  371  ACATTAACGACAACCCGCCCAGGTTCTCCGTAACAGAACAAAAGCTCTCAATACCTGAATCCAGACTGCTTGAC  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  ACATTAACGACAACCCGCCCAGGTTCTCCGTAACAGAACAAAAGCTCTCAATACCTGAATCCAGACTGCTTGAC  444

Query  445  TCTCGATTTCCACTAGAAGGCGCATCTGATGCGGATGTTGGAGAGAACGCATTGCTTACTTACAAACTCAGTCC  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  TCTCGATTTCCACTAGAAGGCGCATCTGATGCGGATGTTGGAGAGAACGCATTGCTTACTTACAAACTCAGTCC  518

Query  519  AAATGAGTATTTTGTTCTTGATATTATAAACAAAAAAGACAAAGACAAATTCCCAGTGCTTGTTCTGCGGAAGC  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  AAATGAGTATTTTGTTCTTGATATTATAAACAAAAAAGACAAAGACAAATTCCCAGTGCTTGTTCTGCGGAAGC  592

Query  593  TGCTGGATCGTGAAGAAAATCCTCAGCTAAAGTTGTTGTTGACAGCAACTGATGGAGGCAAACCTGAATTTACC  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TGCTGGATCGTGAAGAAAATCCTCAGCTAAAGTTGTTGTTGACAGCAACTGATGGAGGCAAACCTGAATTTACC  666

Query  667  GGATCTGTTTCTCTGCTGATCCTGGTGTTAGATGCCAATGATAACGCCCCTATCTTTGACAGACCGGTTTATGA  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GGATCTGTTTCTCTGCTGATCCTGGTGTTAGATGCCAATGATAACGCCCCTATCTTTGACAGACCGGTTTATGA  740

Query  741  AGTTAAGATGTATGAAAATCAAGTGAACCAAACATTAGTAATACGGCTCAACGCTTCTGATTCGGATGAAGGAA  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  AGTTAAGATGTATGAAAATCAAGTGAACCAAACATTAGTAATACGGCTCAACGCTTCTGATTCGGATGAAGGAA  814

Query  815  TAAACAAGGAAATGATGTATTCATTTAGCTCTTTGGTCCCACCCACGATAAGAAGGAAATTTTGGATAAACGAA  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TAAACAAGGAAATGATGTATTCATTTAGCTCTTTGGTCCCACCCACGATAAGAAGGAAATTTTGGATAAACGAA  888

Query  889  AGGACGGGAGAAATAAAAGTAAATGATGCTATTGACTTTGAGGACAGTAACACTTATGAAATTCATGTAGATGT  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  AGGACGGGAGAAATAAAAGTAAATGATGCTATTGACTTTGAGGACAGTAACACTTATGAAATTCATGTAGATGT  962

Query  963  TACAGATAAGGGAAACCCACCTATGGTTGGTCACTGCACGGTCCTAGTGGAACTACTGGATGAAAATGATAATT  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  TACAGATAAGGGAAACCCACCTATGGTTGGTCACTGCACGGTCCTAGTGGAACTACTGGATGAAAATGATAATT  1036

Query 1037  CACCTGAGGTGATTGTCACTTCTCTGTCTCTCCCAGTGAAAGAAGATGCTCAAGTGGGCACCGTCATTGCCCTA  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  CACCTGAGGTGATTGTCACTTCTCTGTCTCTCCCAGTGAAAGAAGATGCTCAAGTGGGCACCGTCATTGCCCTA  1110

Query 1111  ATCAGCGTTTCTGACCATGATTCAGGAGCCAACGGACAGGTCACCTGCTCTCTGACGCCTCACGTTCCGTTCAA  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  ATCAGCGTTTCTGACCATGATTCAGGAGCCAACGGACAGGTCACCTGCTCTCTGACGCCTCACGTTCCGTTCAA  1184

Query 1185  GCTGGTGTCCACCTACAAGAATTACTACTCATTGGTGCTGGACAGCGCTCTGGACCGCGAGAGGGTGTCGGCCT  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  GCTGGTGTCCACCTACAAGAATTACTACTCATTGGTGCTGGACAGCGCTCTGGACCGCGAGAGGGTGTCGGCCT  1258

Query 1259  ATGAGCTGGTGGTGACCGCGCGGGACGGGGGCTCGCCTCCGCTGTGGGCCACGGCCAGCGTGTCTGTGGAGGTG  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  ATGAGCTGGTGGTGACCGCGCGGGACGGGGGCTCGCCTCCGCTGTGGGCCACGGCCAGCGTGTCTGTGGAGGTG  1332

Query 1333  GCCGACGTGAACGACAACGCGCCTGCGTTCGCGCAGTCCGAGTACACGGTGTTCGTGAAGGAGAACAACCCGCC  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  GCCGACGTGAACGACAACGCGCCTGCGTTCGCGCAGTCCGAGTACACGGTGTTCGTGAAGGAGAACAACCCGCC  1406

Query 1407  AGGCTGCCACATCTTCACGGTGTCTGCGTGGGACGCGGACGCGCAGGAGAACGCCCTGGTGTCCTACTCTCTGG  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  AGGCTGCCACATCTTCACGGTGTCTGCGTGGGACGCGGACGCGCAGGAGAACGCCCTGGTGTCCTACTCTCTGG  1480

Query 1481  TGGAGCGGCGGTTGGGCGAGCGCTCGCTGTCGAGCTACGTGTCGGTGCACGCGGAGAGCGGCAAGGTGTACGCG  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  TGGAGCGGCGGTTGGGCGAGCGCTCGCTGTCGAGCTACGTGTCGGTGCACGCGGAGAGCGGCAAGGTGTACGCG  1554

Query 1555  CTGCAGCCGCTGGACCACGAGGAGCTGGAGCTGCTACAGTTCCA------------------------GCC---  1601
            ||||||||||||||||||||||||||||||||||||||||||||                        |||   
Sbjct 1555  CTGCAGCCGCTGGACCACGAGGAGCTGGAGCTGCTACAGTTCCAGGTGAGCGCGCGCGATGGGGGCGTGCCGCC  1628

Query 1602  --------------------------------------------ACGACAGC---CCAACCCTGACTGGCGTTA  1628
                                                        ||||||.|   ||..|.||| |||||||  
Sbjct 1629  TCTGGGCAGCAACTTGACGCTGCAGGTGTTCGTGCTGGACGAGAACGACAACGCTCCCGCGCTG-CTGGCGT--  1699

Query 1629  CTCTGCCTCC--CTG--AGAGCAGGC-ATGCA------CAGCT----CT-------------------------  1662
                  ||||  |||  ||.||.||| .||||      .||||    ||                         
Sbjct 1700  ------CTCCCGCTGGCAGCGCGGGCGGTGCAGTCAGTGAGCTGGTGCTGCGGTCGGTGGTTGCGGGTCACGTG  1767

Query 1663  ---------GTGCACCTAGAGGAGGCTG-----GCATTCTACG---GGCTGGTCCAGGAGGGCCTGATCAGCAG  1719
                     ||||.|..||.|||.||||     |.||.|.|||   |||| |||       |..|||...||||
Sbjct 1768  GTGGCTAAGGTGCGCGCAGTGGACGCTGACTCTGGATACAACGCGTGGCT-GTC-------GTATGAATTGCAG  1833

Query 1720  TGGCCAACAGT----------ATCCAGT---------------------GCAACACCAGAACCAGAGGC-----  1757
            |.|.|..|.||          ||||.||                     ||.|.|.|||.||  ||.||     
Sbjct 1834  TCGGCGGCGGTTGGTGCACGCATCCCGTTTCGCGTGGGGCTGTACACGGGCGAGATCAGTAC--GACGCGCGCT  1905

Query 1758  ----AGGAGA---AGTGTCCCCTCCAGTC-------GGTGCGGGT------------------GTC---AACAG  1796
                |.||||   |.|..||.|.|||| |       |||||.|||                  |||   .||.|
Sbjct 1906  CTGGATGAGACTGACTCGCCACGCCAG-CGCCTACTGGTGCTGGTGAAGGACCATGGCGAGCCGTCGCTGACGG  1978

Query 1797  CAACAGC-----------TGGACCTT-TAAATACGGA------CCAGGCAACCCCAAACAATCCGGTCCCGG--  1850
            |.||.||           ||...||| |      |||      |||||||  |||||....||  |||.|||  
Sbjct 1979  CCACGGCCACTGTGCTTGTGTCGCTTGT------GGAGGGCAGCCAGGCA--CCCAAGGCCTC--GTCGCGGGC  2042

Query 1851  -TGAGT--------TGCCCGACAAATTCATTATCCC---AGGATCT---------CCTGCAATCATCTCCATCC  1903
             |.|||        .||||||       ..|..|||   .||||.|         ||||  ||||||.|||||.
Sbjct 2043  TTCAGTGGGCGTGGCGCCCGA-------GGTGGCCCTGGTGGATGTCAACGTGTACCTG--ATCATCGCCATCT  2107

Query 1904  G---------------GCAGGAGC-----CTACTAACAGCCAAATTG-ACAAAAGTGACTTCATAACCT-----  1951
            |               ||.||.||     ||.||    ||     || ||       |||.||    ||     
Sbjct 2108  GCGCGGTGTCCAGCTTGCTGGTGCTCACGCTGCT----GC-----TGTAC-------ACTGCA----CTGAGGT  2161

Query 1952  --TCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAA---GGGTAAC-----AAGACCCA------  2009
              |||||     ||.|...|||.||              |..|.|   |||   |     ||| ||||      
Sbjct 2162  GCTCGGC-----GGCGCCCACCGAG--------------GGCGCATGTGGG---CCGGTGAAG-CCCACGCTGG  2212

Query 2010  -------------GGAGAAAAAAGAGAAAGGGAACAGCAC-GACTGACAACAGTGAC--CAG------------  2055
                         ||.|            ||||.|.|..| .|||..||.|||.|.|  |||            
Sbjct 2213  TGTGCTCTAGCGCGGTG------------GGGAGCTGGTCTTACTCGCAGCAGAGGCGGCAGAGGGTGTGTTCT  2274

Query 2056  --------------------------------------------------------------------------  2055
                                                                                      
Sbjct 2275  GGGGAGGGCCTGCCCAAGGCGGACCTCATGGCCTTCAGCCCCAGCCTTCCACCATGCCCAATGGTAGATGTGGA  2348

Query 2056  --------------------------------------------------------------------------  2055
                                                                                      
Sbjct 2349  CGGGGAAGATCAGTCTATTGGAGGGGACCACTCTAGGAAGGTGGGTTATTACGTTTTCATTTTCCTTTTGTGCT  2422

Query 2056  --------------------------------------------------------------------------  2055
                                                                                      
Sbjct 2423  TTATGAATAATATTTTCTCTTACCGCATTTTCTCAAATATGTATCAGAATATTTCATTTTTGTCTACATTCCAT  2496

Query 2056  ------------------------------------  2055
                                                
Sbjct 2497  TTATGCTTGAATATTTCTAGTGATACCTTTGTAATA  2532