Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_03707
- Subject:
- NM_138661.1
- Aligned Length:
- 2950
- Identities:
- 1793
- Gaps:
- 908
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGAGATTAGGAAATCGACCAGAAGATATTAGAACTTGTGTGCATCTCAGATGGCACATTCATGGACTTTTAAG 74
Query 1 --------ATGGTT-----------TCCAGATGTAGCT---GCCTGGGGGTCCAGTGTCTGCTGCTCTCGCTTC 52
|||.|| ||||.|||| || ||.|||.|.| ..|.|.|||||.||.|.|||||
Sbjct 75 ACAAGAGAATGCTTCAGTGGTGATCTCCAAATGT--CTGAGGCATGGAGCT-TGGCGCCTGCTACTTTGGCTTC 145
Query 53 TTCTCCTCGCAGCCTGGGAGGTGGGGAGCGGCCAGCTCCACTACTCAGTCTACGAGGAGGCCAGACACGGCACC 126
|.|||||.|||.|.|||||.||.||||||||||||||.||||||||.|||...||||||||||.||||||||||
Sbjct 146 TGCTCCTTGCAACATGGGATGTAGGGAGCGGCCAGCTTCACTACTCTGTCCCAGAGGAGGCCAAACACGGCACC 219
Query 127 TTCGTGGGCCGCATCGCGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCAGCGCCTGTTCCGGGTGGCGTC 200
||||||||||||||||||||||||.||||||||||||||||.||.|||||||..|||||||||.||||||.|||
Sbjct 220 TTCGTGGGCCGCATCGCGCAGGACTTGGGGCTGGAGCTGGCTGAACTGGTGCCCCGCCTGTTCAGGGTGGTGTC 293
Query 201 CAAAAGA-CACGGGGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATTGACCGC 273
| ||.|| |.||||||||||||||||||||||||.||||||||||||||||||||||||||||||||.|||||.
Sbjct 294 C-AAGGACCGCGGGGACCTTCTGGAGGTAAATCTTCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGG 366
Query 274 GAGGAGCTGTGCGGGCGGAGCGTGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTT 347
||||||||||||||||.||.||.||||||.||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 GAGGAGCTGTGCGGGCAGAACGCGGAGTGTAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTT 440
Query 348 CCATGTGGACGTGGAAGTGAAGGACATTAACGACAACCCGCCCAGGTTCTCCGTAACAGAACAAAAGCTCTCAA 421
|||.|||||.|||||.||||.|||||||||.||||||||.||.|..|||||||||.|.|||||||||.|||...
Sbjct 441 CCACGTGGAGGTGGAGGTGAGGGACATTAATGACAACCCTCCGATATTCTCCGTAGCGGAACAAAAGATCTTGG 514
Query 422 TACCTGAATCCAGACTGCTTGACTCTCGATTTCCACTAGAAGGCGCATCTGATGCGGATGTTGGAGAGAACGCA 495
||.|||||||.|||||||||||.|||||||||||||||||||||||.||||||||.|||||||||||||||.|.
Sbjct 515 TAGCTGAATCTAGACTGCTTGATTCTCGATTTCCACTAGAAGGCGCCTCTGATGCAGATGTTGGAGAGAACTCT 588
Query 496 TTGCTTACTTACAAACTCAGTCCAAATGAGTATTTTGTTCTTGATATTATAAACAAAAAAGACAAAGACAAATT 569
.||||||||||||||||||||.|||||||||.||||.|.|||||||||.|||||||||.||.|||||.||||||
Sbjct 589 ATGCTTACTTACAAACTCAGTTCAAATGAGTTTTTTATCCTTGATATTGTAAACAAAAGAGGCAAAGGCAAATT 662
Query 570 CCCAGTGCTTGTTCTGCGGAAGCTGCTGGATCGTGAAGAAAATCCTCAGCTAAAGTTGTTGTTGACAGCAACTG 643
.||||||||||||||.||.||.|||.|.|||||.||||||||||||||||||||||||.|..||||||||||.|
Sbjct 663 TCCAGTGCTTGTTCTTCGAAAACTGATAGATCGAGAAGAAAATCCTCAGCTAAAGTTGCTACTGACAGCAACCG 736
Query 644 ATGGAGGCAAACCTGAATTTACCGGATCTGTTTCTCTGCTGATCCTGGTGTTAGATGCCAATGATAACGCCCCT 717
||||||||||||||||||||||.|||||.|||||||||.||||||.||||||.||||..|||||.||.||.|||
Sbjct 737 ATGGAGGCAAACCTGAATTTACGGGATCGGTTTCTCTGTTGATCCAGGTGTTGGATGTTAATGACAATGCTCCT 810
Query 718 ATCTTTGACAGACCGGTTTATGAAGTTAAGATGTATGAAAATCAAGTGAACCAAACATTAGTAATACGGCTCAA 791
.|.|||||||||.|.|||||.|||||||||||||||||.|||||||.|||..||||.|||||||||.||||.||
Sbjct 811 GTGTTTGACAGATCTGTTTACGAAGTTAAGATGTATGAGAATCAAGAGAATAAAACCTTAGTAATATGGCTGAA 884
Query 792 CGCTTCTGATTCGGATGAAGGAATAAACAAGGAAATGATGTATTCATTTAGCTCTTTGGTCCCACCCACGATAA 865
.|||.||||.||.|||||||||||||||||.|||.||..||||||||||||||||||.|.|.||.|.|..||||
Sbjct 885 TGCTACTGACTCAGATGAAGGAATAAACAAAGAAGTGGAGTATTCATTTAGCTCTTTAGCCTCATCGATTATAA 958
Query 866 GAAGGAAATTTTGGATAAACGAAAGGACGGGAGAAATAAAAGTAAATGATGCTATTGACTTTGAGGACAGTAAC 939
||..|||||||...||||||||||.|||.|||||.||||||.||||.|..|||||||||||||||||.||||||
Sbjct 959 GACAGAAATTTCTAATAAACGAAAAGACTGGAGAGATAAAAATAAACGGCGCTATTGACTTTGAGGAGAGTAAC 1032
Query 940 ACTTATGAAATTCATGTAGATGTTACAGATAAGGGAAACCCACCTATGGTTGGTCACTGCACGGTCCTAGTGGA 1013
|.||||||||||||.||.||||.|||||||||.|||.|||||||||||||||.|||||||||.||.||.|||||
Sbjct 1033 AATTATGAAATTCACGTGGATGCTACAGATAAAGGATACCCACCTATGGTTGCTCACTGCACCGTACTCGTGGA 1106
Query 1014 ACTACTGGATGAAAATGATAATTCACCTGAGGTGATTGTC---ACTTCTCTGTCTCTCCCAGTGAAAGAAGATG 1084
|.|..||||||||||||||||..|||| ||.|||.||| ||||||.|||||.|.||.|||||||||||||
Sbjct 1107 AATCTTGGATGAAAATGATAACGCACC---GGAGATAGTCCTTACTTCTTTGTCTTTGCCGGTGAAAGAAGATG 1177
Query 1085 CTCAAGTGGGCACCGTCATTGCCCTAATCAGCGTTTCTGACCATGATTCAGGAGCCAACGGACAGGTCACCTGC 1158
|||...|||||.|.||.||.|||||.||||||||.||.|||.|.||.||.||.|.|||.||||||||.||||||
Sbjct 1178 CTCCTTTGGGCTCTGTAATCGCCCTGATCAGCGTGTCAGACAAAGACTCTGGTGTCAATGGACAGGTGACCTGC 1251
Query 1159 TCTCTGACGCCTCACGTTCCGTTCAAGCTGGTGTCCACCTACAAGAATTACTACTCATTGGTGCTGGACAGCGC 1232
||..||||....||.||.||.||||||.||||||||||||.||||||||||||.||..|.||||||||||||||
Sbjct 1252 TCCTTGACTAACCATGTCCCCTTCAAGTTGGTGTCCACCTTCAAGAATTACTATTCCCTCGTGCTGGACAGCGC 1325
Query 1233 TCTGGACCGCGAG-----AGGGTGTCGGCCTATGAGCTGGTGGTGACCGCGCGGGACGGGGGCTCGCCTCCGCT 1301
.||||||||.||| || |.|.||||.||.||||||||||.||.||.||||||||||||||..|.||
Sbjct 1326 CCTGGACCGAGAGACCACAG-----CTGACTATAAGGTGGTGGTGACAGCCCGCGACGGGGGCTCGCCCTCTCT 1394
Query 1302 GTGGGCCACGGCCAGCGTGTCTGTGGAGGTGGCCGACGTGAACGACAACGCGCCTGCGTTCGCGCAGTCCGAGT 1375
|||||||||||||||||||||.|||||||||||.||||||||||||||.||.|||||.|||||.||..||||.|
Sbjct 1395 GTGGGCCACGGCCAGCGTGTCCGTGGAGGTGGCTGACGTGAACGACAATGCTCCTGCATTCGCACATCCCGAAT 1468
Query 1376 ACACGGTGTTCGTGAAGGAGAACAACCCGCCAGG-CTGCCACATCTTCACGGTGTCTGCGTGGGACGCGGACGC 1448
|||||||||||||||||||||||||||||||.|| .|| |||||||||||.||.|..|||..|||.||.|||||
Sbjct 1469 ACACGGTGTTCGTGAAGGAGAACAACCCGCCTGGAGTG-CACATCTTCACAGTATTGGCGGTGGATGCTGACGC 1541
Query 1449 GCAGGAGAACGCCCTGGTGTCCTACTCTCTGGTGGAGCGGCGGTTGGGCGAGCGCTCGCTGTCGAGCTACGTGT 1522
.|||||||||||.||||||||||||||.||||||||||||.||.||||||||||||.||||||||||||.||||
Sbjct 1542 ACAGGAGAACGCGCTGGTGTCCTACTCGCTGGTGGAGCGGAGGGTGGGCGAGCGCTTGCTGTCGAGCTATGTGT 1615
Query 1523 CGGTGCACGCGGAGAGCGGCAAGGTGTACGCGCTGCAGCCGCTGGACCACGAGGAGCTGGAGCTGCTACAGTTC 1596
|.|||||||||||||||||||||||||.||||||||||||.||||||||.|||||||||||||||||.||||||
Sbjct 1616 CTGTGCACGCGGAGAGCGGCAAGGTGTTCGCGCTGCAGCCTCTGGACCATGAGGAGCTGGAGCTGCTGCAGTTC 1689
Query 1597 C------------------------------------------------------------------------- 1597
|
Sbjct 1690 CAGGTGAGCGCGCGGGATGCTGGTGTGCCTGCCCTGGGCAGCAATGTGACTCTGCAGGTGTTTGTGCAGGATGA 1763
Query 1598 -------------------------------------------------------------------------- 1597
Sbjct 1764 GAATGACAATCCGCCCACGCTGCTCGGACATCAGTCAGGTGGACCTGCTGGCGAATTTAGCCAGCTTGTTTCGC 1837
Query 1598 -------------------------------------------------------------------------- 1597
Sbjct 1838 GGTCAGTGGGTGCGGGACACGTGGTGTCAAAGGTGCGCGCGGTGGATGCGGACTCCGGTTACAACGCGTGGCTG 1911
Query 1598 -------------------------------------------------------------------------- 1597
Sbjct 1912 TCTTATGAGCTCCACCCAACTGTGGGCGCTCGCAGCCCTTTCCGTGTCGGTCTCTACACGGGTGAGATCAGCAT 1985
Query 1598 -------------------------------------------------------------------------- 1597
Sbjct 1986 GACCCGAGCCCTGGATGAATCTGATTTACCGCGCCAGCGCCTATTGGTGTTGGTGAAGGACCACGGCGAACCTA 2059
Query 1598 -------------------------------------------------------------------------- 1597
Sbjct 2060 TGTTGATCGCCACTGCCACCGTTTTGGTGTCCCTGGTGGAGAACGGCCAGGTGCCAAAAGCTTCTTCCCAGGGG 2133
Query 1598 -------------------------------------------------------------------------- 1597
Sbjct 2134 TTGCCCAACTCCTCCCGCAGGGAGGCGTCGCTGATGGATGTCAATGTATACCTGATCATTGCCATTTGCGCAGT 2207
Query 1598 -------------------------------------------------------------------------- 1597
Sbjct 2208 GTCCAGCCTGTTGGTGCTCACGCTGCTGCTATACACAGCCCTGCGCTGCTCAGCTGTGCCCATGCAGGCTGGGT 2281
Query 1598 -------------------------------------------------------------------------- 1597
Sbjct 2282 GCGGGCTTGGGAAGCCCACTCTGGTGTGCTCAAGCGCTGTGGGGACCTGGTCATACTCACAGCAGAGACAGCAG 2355
Query 1598 -------------------------------------------------------------------------- 1597
Sbjct 2356 CGAGTATGCTCAGGAGAGGGTCCGCCCAAAACCGACCTCATGGCTTTTAGCCCCAGTCTTACACCTTGCCCAGT 2429
Query 1598 --------------------------------------------------AGCCACGACAGCCCAACCCTGACT 1621
||||.||.||||||||||||||||
Sbjct 2430 GGCCGAAGTGGGAATGGAAAGTCATTCTGTTGGAGGAGACGTGCCCGGAAAGCCCCGGCAGCCCAACCCTGACT 2503
Query 1622 GGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCACAGCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCT 1695
||||.|||||||||||.||.|||||||||||||||||||||||||||||.||||||||||||||||||||||||
Sbjct 2504 GGCGCTACTCTGCCTCGCTAAGAGCAGGCATGCACAGCTCTGTGCACCTGGAGGAGGCTGGCATTCTACGGGCT 2577
Query 1696 GGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTC 1769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||.|||||
Sbjct 2578 GGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCAACACCAGAACCTGAGGCAGGAGAGGTGTC 2651
Query 1770 CCCTCCAGTCGGTGCGGGTGTCAACAGCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCG 1843
||||||.||.||.||.|||||||||||||||||||||||||||||||||||||||||||||||||||||.||||
Sbjct 2652 CCCTCCGGTGGGCGCCGGTGTCAACAGCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAGTCCG 2725
Query 1844 GTCCCGGTGAGTTGCCCGACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACT 1917
||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct 2726 GTCCCGGTGAGTTGCCAGACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTGCT 2799
Query 1918 AACAGCCAAATTGACAAAAGTGACTTCATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAA 1991
||||.|||||||||||||||.||.||.|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2800 AACAACCAAATTGACAAAAGCGATTTTATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAA 2873
Query 1992 GAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACTGACAACAGTGACCAG 2055
||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||
Sbjct 2874 GAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACGGACAACAGTGACCAG 2937
