Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_03781
- Subject:
- NR_144382.1
- Aligned Length:
- 3758
- Identities:
- 1107
- Gaps:
- 2636
Alignment
Query 1 ATGAAGAAAAACAGAGAAAGATTCTGCAATAGAGAGAGAGAATTTGTATATAAATTTAAAGTA-----GGAAGT 69
.||.|..|| |||||| |.||||
Sbjct 1 --------------------------------------------GGTGTGGAA----AAAGTATGTCGGCAAGT 26
Query 70 CAG-TGCTT---------AGAA----CTGAGAGTGCCACTCAAATTTCCTGTTCAAGA---GAATGCCAGTCAT 126
||| ||.|| ||.| ||||.|| |||.|.| || ||.|||| ||
Sbjct 27 CAGCTGGTTTCCCAGTGCAGGACGCGCTGACAG-----CTCGAGT-----------GAGCGGACTGCC---CA- 80
Query 127 TTGCATGGACGTCTGATGCTGCTGCACAGTTTACCGTGCTTTATAGAAAAAGACTTAAAAGAAGCTCTGACTCA 200
||||.||.|| || ||| |..||||||||||||||||||||||||
Sbjct 81 ------GGACTTCGGA---------AC----------------TAG-ACGAGACTTAAAAGAAGCTCTGACTCA 122
Query 201 GTTTATAGAAGAAGAATCCCTCAGCGATTATGATAGAGATGCTGAAGCATCCCTGGCAGCTGTGAAATCAGGTG 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 GTTTATAGAAGAAGAATCCCTCAGCGATTATGATAGAGATGCTGAAGCATCCCTGGCAGCTGTGAAATCAGGTG 196
Query 275 AAGTAGATTTACATCAGCTGGCGAGTACATGGGCCAAAGCTTATGCTGAGACCACGTTAGAGCATGCAAGGCCT 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 197 AAGTAGATTTACATCAGCTGGCGAGTACATGGGCCAAAGCTTATGCTGAGACCACGTTAGAGCATGCAAGGCCT 270
Query 349 GAAGAACCCAGCTGGGATGAAGATTTTGCAGATGTGTACCATGACTTAATTCATTCTCCTGCCTCTGAAACTCT 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 GAAGAACCCAGCTGGGATGAAGATTTTGCAGATGTGTACCATGACTTAATTCATTCTCCTGCCTCTGAAACTCT 344
Query 423 CTTAAATTTGGAACATAATTACTTTGTTAGTATCTCAGAACTGATTGGTGAAAGAGATGTGGAGCTGAAAAAAT 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 CTTAAATTTGGAACATAATTACTTTGTTAGTATCTCAGAACTGATTGGTGAAAGAGATGTGGAGCTGAAAAAAT 418
Query 497 TACGAGAGAGACAAGGTATTGAAATGGAAAAAGTCATGCAGGAATTGGGAAAATCACTGACAGATCAAGATGTA 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TACGAGAGAGACAAGGTATTGAAATGGAAAAAGTCATGCAGGAATTGGGAAAATCACTGACAGATCAAGATGTA 492
Query 571 AATTCACTGGCTGCTCAGCATTTTGAATCCCAGCAAGACCTAGAAAATAAATGGTCGAATGAATTAAAACAATC 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 AATTCACTGGCTGCTCAGCATTTTGAATCCCAGCAAGACCTAGAAAATAAATGGTCGAATGAATTAAAACAATC 566
Query 645 AACTGCCATCCAAAAACAAGAGTATCAAGAATGGGTAATAAAACTTCACCAAGACCTAAAAAACCCCAACAACA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 AACTGCCATCCAAAAACAAGAGTATCAAGAATGGGTAATAAAACTTCACCAAGACCTAAAAAACCCCAACAACA 640
Query 719 GCTCCCTTAGTGAGGAAATTAAAGTTCAGCCAAGTCAGTTCAGAGAATCTGTAGAAGCAATTGGAAGGATTTAT 792
|||||||||
Sbjct 641 GCTCCCTTA----------------------------------------------------------------- 649
Query 793 GAGGAACAGAGAAAGTTAGAAGAAAGTTTTACCATTCACTTAGGAGCCCAGTTGAAGACCATGCATAATTTGAG 866
Sbjct 650 -------------------------------------------------------------------------- 649
Query 867 ATTGCTGAGAGCAGATATGCTGGACTTCTGTAAGCATAAAAGAAATCATCGAAGTGGTGTGAAACTTCATCGGC 940
Sbjct 650 -------------------------------------------------------------------------- 649
Query 941 TCCAAACAGCTCTGTCACTTTATTCTACATCTCTCTGTGGCCTGGTTTTACTAGTAGATAATCGAATTAATTCA 1014
Sbjct 650 -------------------------------------------------------------------------- 649
Query 1015 TATAGTGGTATTAAAAGAGATTTTGCCACAGTTTGCCAAGAATGCACTGACTTCCATTTCCCCCGAATTGAAGA 1088
Sbjct 650 -------------------------------------------------------------------------- 649
Query 1089 GCAATTAGAAGTTGTCCAACAGGTGGTACTTTATGCTAGAACCCAGCGCAGGAGTAAATTGAAAGAATCACTTG 1162
|
Sbjct 650 -------------------------------------------------------------------------G 650
Query 1163 ATTCTGGAAACCAAAATGGAGGAAATGATGATAAGACTAAGAATGCTGAGAGGAACTATTTAAATGTTTTACCT 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 ATTCTGGAAACCAAAATGGAGGAAATGATGATAAGACTAAGAATGCTGAGAGGAACTATTTAAATGTTTTACCT 724
Query 1237 GGGGAATTTTATATTACACGGCATTCTAATCTCTCAGAAATCCATGTTGCTTTCCATCTCTGTGTGGATGACCA 1310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 GGGGAATTTTATATTACACGGCATTCTAATCTCTCAGAAATCCATGTTGCTTTCCATCTCTGTGTGGATGACCA 798
Query 1311 TGTGAAATCGGGAAACATCACTGCTCGTGATCCTGCCATTATGGGACTCCGAAATATACTCAAAGTTTGCTGTA 1384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 TGTGAAATCGGGAAACATCACTGCTCGTGATCCTGCCATTATGGGACTCCGAAATATACTCAAAGTTTGCTGTA 872
Query 1385 CCCATGACATCACAACAATAAGCATTCCTCTCTTGCTGGTACATGATATGTCAGAGGAAATGACTATACCCTGG 1458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 CCCATGACATCACAACAATAAGCATTCCTCTCTTGCTGGTACATGATATGTCAGAGGAAATGACTATACCCTGG 946
Query 1459 TGCTTAAGGAGAGCGGAACTTGTGTTCAAGTGTGTCAAAGGTTTCATGATGGAAATGGCTTCATGGGATGGAGG 1532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 TGCTTAAGGAGAGCGGAACTTGTGTTCAAGTGTGTCAAAGGTTTCATGATGGAAATGGCTTCATGGGATGGAGG 1020
Query 1533 AATTTCTAGGACAGTGCAATTTCTAGTACCACAGAGTATTTCTGAAGAAATGTTTTATCAACTTAGTAACATGC 1606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 AATTTCTAGGACAGTGCAATTTCTAGTACCACAGAGTATTTCTGAAGAAATGTTTTATCAACTTAGTAACATGC 1094
Query 1607 TTCCCCAGATCTTCCGAGTATCATCAACACTCACTCTGACATCCAAGCAC------------------------ 1656
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1095 TTCCCCAGATCTTCCGAGTATCATCAACACTCACTCTGACATCCAAGCACTAAACCCTTATAGATTGACATGCT 1168
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 1169 GGCAGAAGATGATTGTTAAACTCTCCAGGAACTTGTGCTATGCTGGGAATCTGTCAAGCAAAAGATGCCCAGAA 1242
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 1243 AGAGAACTTGCAGCTCAATCCACAAATCAAGATACATGTGTGTGAAACCATTCCAAAAATTTATATACTGCACA 1316
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 1317 AACTGGTGATCAACCCCTAACTTAAACACTTAAAGTCTCTTTATGAATTTCTCTTTTTTTCTTCTCTGTGTTAC 1390
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 1391 CTGTGAATATTAGTAATCTAAAACTTTTTATTTATCACACATGGACACTTGGGAAAGGAAACTTGATTATATTT 1464
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 1465 ACATGGAGGCATTTGACTTTTTCAAGAGGCTTGACTCGTCTCAGGTGCAATCCTTAATTAAACATACAAACAAA 1538
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 1539 ATTTTCCTTTTACTTTCTTTGCCAAAACAAAATGTAAAAGCACTGAAATATACATTGCAAGTACAAATTTCCTG 1612
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 1613 TGAAAATCTTTTTATAGAAACACAAATGTATAAGACAAATGTGCTTGTTCTTTTAAATTCTCCTGTTTCAGAAT 1686
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 1687 CTCTTTTTAATCTACTCCTAAGGATGTACAAGTTAGAGTCAGAAGACGTTTTGGATTTTTTCCCTCTCTCTCAT 1760
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 1761 CCTCCCGCTGTGCCCTTGCACTTGCATATTAATAACATTTCATGGACTGGGAAATAGTGTTCTTTTTTGCAAGC 1834
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 1835 TTGATGTCAAGTTAGTCTAAACCAGCACCTGGCAGTATTTTAGTGCTCATCAACATTGTGACAATCACACAAGG 1908
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 1909 AAGATCATTTCTACATTTCTGTCCTCCCTGCGTTCTCAGCTTGCTTAACCATTCCTCTACCTCTTGCATTTTTT 1982
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 1983 TGCGGATAAATGTATCCCCATTTCTGCTTCTCTGTTTCCCCTCCTTTTCCATTGTTTTTCCTTATGGTACTACT 2056
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 2057 TTCTCAGGTGCTACATATCATATATTTGTCCCATCTATAACATATTTAAATGCTATAAGTAGTAACTCCATTAA 2130
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 2131 ACAAAGGCATTTACAAAAGCACACAGGTGTTTAGAAAAGCAATAGTTTCATCAATTCCAAGTTATGTGGATATT 2204
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 2205 GTAACTGGCCACAAGAATGAAATGGAGGGCATTTGGTGTCATAAGATGGCATGTCTTGATGACAAGAAACAAAA 2278
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 2279 CGCCCTTCATTAATATGCCTCAGTGTAATAACTATTATAGAAACTGTTGGCAAGCAGAGTGCTTTCCTATAACA 2352
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 2353 GAATGTGTCTTAATTTTCTACTCGAGGGAAAGGTTTGTCCAGGTAACAACACTAAAGACAACCCTAAGAACACC 2426
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 2427 CACTCCAGCAGTATGTCCATTAGACACTAAAACTCTCCAAATTATTTGTCAGGGAGCCTGGCGATTCTGCCAAG 2500
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 2501 AAGGCAGGTGTTTTGCCCTTAGAGCCTATACAGTTCTCTTGGAGAAATTGTCTTTCAGGCACCACTGTTAATCA 2574
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 2575 CTGAGACTGATTCTAATGCAAAGCAGGGAAGACAGAGGCAGAAACCAGGAGAGTGGTAGATCAGTGCAGCCCAG 2648
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 2649 ATATCGGAATGGAGGAGCAAAGTTTCATTCACGGATGTTTGTTGAATGCTGCTGCCCAACTCTTCCTTTGTCAC 2722
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 2723 CTCTAGGCTATTCCACTAAGTTACTTATAAACTGGTGGCTTTAACTGAGGGCTGTGTAAAGGTACTATTTGGCA 2796
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 2797 TGTGAAGTCAGGATAAATTTATCGAATGTCCGTTTTCCACATGCAACTGTGTTACAGAAGTAGTAAAATTGGAA 2870
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 2871 GAATCATGTTTATGGTGTTACCACTGATGGAAACACACAAACACCAAGCTAATAATAAATATATAACTTAAAAA 2944
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 2945 GCTAATTATATGCACTGAAATGGTGGGAATTTTAGTGATGCAGTAATTGAGGAGTCTGGAGTTTTGTATTTGGA 3018
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 3019 CCAAGAATTATGAGATGAGGATCTTTTTCTGAGTGTTCTAAAGGGCTTCTTGAGGGGGAGTGGTTTAAAGCACT 3092
Query 1657 -------------------------------------------------------------------------- 1656
Sbjct 3093 TCATGAATGATGTGAAGAAGGTACCTTGGGCTGAGACAGCATTCTAGGTACAGATGGCACTCTGTTCAACCAAC 3166
Query 1657 ---------------------------------------------------------- 1656
Sbjct 3167 TGTGGATGGAAAATATTCTGAAAAAAAATACAATAAAAATTTTAAAAATACAATATAA 3224
