Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_03793
- Subject:
- NM_194054.3
- Aligned Length:
- 3540
- Identities:
- 1008
- Gaps:
- 2418
Alignment
Query 1 ATGGAAGACCTGGACCAGTCTCCTCTGGT---CTCGTCCTCGGACAGCCCACCCCGGCCGCAGCCCGCGTTCAA 71
|||||||||.|.||||||||..|.||||| |||||||.||||.|||||.||||||||.|.||||||.|||||
Sbjct 1 ATGGAAGACATAGACCAGTCGTCGCTGGTCTCCTCGTCCGCGGATAGCCCGCCCCGGCCCCCGCCCGCTTTCAA 74
Query 72 GTACCAGTTCGTGAGGGAGCCCGAGGACGAGGAGGAAGAAGAGGAGGAGGAAGAGGAGGACGAGGACGAAGACC 145
||||||||||||||.|||||||||||||||||||||.||.||.||.|||||.||||||||.||.|||||.||||
Sbjct 75 GTACCAGTTCGTGACGGAGCCCGAGGACGAGGAGGACGAGGAAGACGAGGAGGAGGAGGAGGACGACGAGGACC 148
Query 146 TGGAGGAGCTGGAGGTGCTGGAGAGGAAGCCCGCCGCCGGGCTGTCCGCGGCCCCAGTGCCCACCGCCCCTGCC 219
|||||||..|||||||||||||||||||||||||.|||||||||||||||||.||.|||||| .||
Sbjct 149 TGGAGGAATTGGAGGTGCTGGAGAGGAAGCCCGCAGCCGGGCTGTCCGCGGCTCCGGTGCCC---------CCC 213
Query 220 GCCGGCGCGCCCCTGATGGACTTCGGAAATGACTTCGTGCCGCCGGCGCCCCGGGGACCCCTGCCGGCCGCTCC 293
||||.|||.||.|||.||||||||.|.|..||||..|||||.||.||||||||.||.||.|||||||||||.||
Sbjct 214 GCCGCCGCACCGCTGCTGGACTTCAGCAGCGACTCGGTGCCCCCCGCGCCCCGCGGGCCGCTGCCGGCCGCGCC 287
Query 294 CCCCGTCGCCCCGGAGCGGCAGCCGTCTTGGGACCCGAGCCCGGTGTCGTCGACCGTGCCCGCGCCATCCCCGC 367
||||..||||||.|||.||||||||||.|||||.|..|||||.|.|.||| ||||||||||||.||
Sbjct 288 CCCCACCGCCCCTGAGAGGCAGCCGTCCTGGGAACGCAGCCCCGCGGCGT---------CCGCGCCATCCCTGC 352
Query 368 TGTCTGCTGCCGCAGTCTCGCCCTCCAAGCTCCCTGAGGACGACGAGCCTCCGGCCCGGCCTCCCCCTCCTCCC 441
.|.|.||||||||||||..|||||||||||||||.|||||||||||||||||.||.||| |||||..|.
Sbjct 353 CGCCCGCTGCCGCAGTCCTGCCCTCCAAGCTCCCGGAGGACGACGAGCCTCCAGCGCGG------CCTCCGGCG 420
Query 442 CCGGCCAGCGTGAGCCCCCAGGCAGAGCCCGTGTGGACCCCGCCAGCCCCGGCTCCCGCCGCGCCCCCCTCCAC 515
||.|||.|||.||||||||..||.||| ||||||||||||||.|||||
Sbjct 421 CCAGCCGGCGCGAGCCCCCTAGCGGAG---------------------------CCCGCCGCGCCCCCTTCCAC 467
Query 516 CCCGGCCGCGCCCAAGCGCAGGGGCTCCTCGGGCTCAGTGGATGAGACCCTTTTTGCTCTTCCTGCTGCATCTG 589
.||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 GCCGGCCGCGCCCAAGCGCAGGGG---CTCGGGCTCAGTGGATGAGACCCTTTTTGCTCTTCCTGCTGCATCTG 538
Query 590 AGCCTGTGATACGCTCCTCTG----------------------------------------------------- 610
||||||||||||.||||||||
Sbjct 539 AGCCTGTGATACCCTCCTCTGCAGAAAAAATTATGGATTTGAAGGAGCAGCCAGGTAACACTGTTTCGTCTGGT 612
Query 611 -------------------------------------------------------------------------- 610
Sbjct 613 CAAGAGGATTTCCCATCTGTCCTGTTTGAAACTGCTGCCTCTCTTCCTTCTCTATCTCCTCTCTCAACTGTTTC 686
Query 611 -------------------------------------------------------------------------- 610
Sbjct 687 TTTTAAAGAACACGGATACCTTGGTAACTTATCAGCAGTGGCATCCACAGAAGGAACTATTGAAGAAACTTTAA 760
Query 611 -------------------------------------------------------------------------- 610
Sbjct 761 ATGAAGCTTCTAGAGAATTGCCAGAGAGGGCAACAAATCCATTTGTAAATAGAGAGTCAGCAGAGTTTTCAGTA 834
Query 611 -------------------------------------------------------------------------- 610
Sbjct 835 TTAGAATACTCAGAAATGGGATCATCTTTCAATGGCTCCCCAAAAGGAGAGTCAGCCATGTTAGTAGAAAACAC 908
Query 611 -------------------------------------------------------------------------- 610
Sbjct 909 TAAGGAAGAAGTAATTGTGAGGAGTAAAGACAAAGAGGATTTAGTTTGTAGTGCAGCCCTTCATAATCCACAAG 982
Query 611 -------------------------------------------------------------------------- 610
Sbjct 983 AGTCACCTGCGACCCTTACTAAAGTGGTTAAAGAAGACGGAGTTATGTCTCCAGAAAAGACAATGGACATTTTT 1056
Query 611 -------------------------------------------------------------------------- 610
Sbjct 1057 AATGAAATGAAAATGTCAGTGGTAGCACCTGTGAGGGAAGAGTATGCAGATTTTAAGCCATTTGAACAAGCATG 1130
Query 611 -------------------------------------------------------------------------- 610
Sbjct 1131 GGAAGTGAAAGATACTTATGAGGGAAGTAGGGATGTGCTGGCTGCTAGAGCTAATATGGAAAGTAAAGTGGACA 1204
Query 611 -------------------------------------------------------------------------- 610
Sbjct 1205 AAAAATGCTTTGAAGATAGCCTGGAGCAAAAAGGTCATGGGAAGGATAGTGAAAGCAGAAATGAGAATGCTTCT 1278
Query 611 -------------------------------------------------------------------------- 610
Sbjct 1279 TTCCCCAGGACCCCAGAACTTGTGAAGGACGGCTCCAGAGCGTACATCACCTGTGATTCCTTTAGCTCAGCAAC 1352
Query 611 -------------------------------------------------------------------------- 610
Sbjct 1353 CGAGAGTACTGCAGCAAACATTTTCCCTGTGCTAGAAGATCACACTTCAGAAAACAAAACAGATGAAAAAAAAA 1426
Query 611 -------------------------------------------------------------------------- 610
Sbjct 1427 TAGAAGAAAGGAAGGCCCAAATTATAACAGAGAAGACTAGCCCCAAAACGTCAAATCCTTTCCTTGTAGCAATA 1500
Query 611 -------------------------------------------------------------------------- 610
Sbjct 1501 CATGATTCTGAGGCAGATTATGTCACAACAGATAATTTATCAAAGGTGACTGAGGCAGTAGTGGCAACCATGCC 1574
Query 611 -------------------------------------------------------------------------- 610
Sbjct 1575 TGAAGGTCTAACGCCAGATTTAGTTCAGGAAGCATGTGAAAGTGAACTGAACGAAGCCACAGGTACAAAGATTG 1648
Query 611 -------------------------------------------------------------------------- 610
Sbjct 1649 CTTATGAAACAAAAGTGGACTTGGTCCAGACATCAGAAGCTATACAAGAGTCAATTTACCCCACAGCACAGCTT 1722
Query 611 -------------------------------------------------------------------------- 610
Sbjct 1723 TGCCCATCATTTGAGGAAGCTGAAGCAACTCCGTCACCAGTTTTGCCTGATATTGTTATGGAAGCGCCATTAAA 1796
Query 611 -------------------------------------------------------------------------- 610
Sbjct 1797 TTCTCTCCTTCCAAGCACTGGTGCTTCTGTAGCGCAGCCCAGTGCATCCCCACTAGAAGTACCGTCTCCAGTTA 1870
Query 611 -------------------------------------------------------------------------- 610
Sbjct 1871 GTTATGACGGTATAAAGCTTGAGCCTGAAAATCCCCCACCATATGAAGAAGCCATGAGTGTAGCACTAAAAACA 1944
Query 611 -------------------------------------------------------------------------- 610
Sbjct 1945 TCGGACTCAAAGGAAGAAATTAAAGAGCCTGAAAGTTTTAATGCAGCTGCTCAGGAAGCAGAAGCTCCTTATAT 2018
Query 611 -------------------------------------------------------------------------- 610
Sbjct 2019 ATCCATTGCATGTGATTTAATTAAAGAAACAAAGCTCTCCACTGAGCCAAGTCCAGAGTTCTCTAATTATTCAG 2092
Query 611 -------------------------------------------------------------------------- 610
Sbjct 2093 AAATAGCAAAATTTGAGAAGTCGGTGCCTGATCACTGTGAGCTCGTGGATGATTCCTCACCCGAATCTGAACCA 2166
Query 611 -------------------------------------------------------------------------- 610
Sbjct 2167 GTTGACTTATTTAGTGATGATTCAATTCCTGAAGTCCCACAAACACAAGAGGAGGCTGTGATGCTAATGAAGGA 2240
Query 611 -------------------------------------------------------------------------- 610
Sbjct 2241 GAGTCTCACTGAAGTGTCTGAGACAGTAACACAACACAAACATAAGGAGAGACTTAGTGCTTCACCTCAGGAGG 2314
Query 611 -------------------------------------------------------------------------- 610
Sbjct 2315 TAGGAAAGCCATATTTAGAGTCTTTTCAGCCCAATTTACATATTACAAAAGATGCTGCATCTAATGAAATTCCA 2388
Query 611 -------------------------------------------------------------------------- 610
Sbjct 2389 ACATTGACCAAAAAGGAGACAATTTCTTTGCAAATGGAAGAGTTTAATACTGCAATTTATTCCAATGATGACTT 2462
Query 611 -------------------------------------------------------------------------- 610
Sbjct 2463 ACTTTCTTCTAAGGAAGACAAAATGAAAGAAAGTGAAACATTTTCCGATTCATCTCCCATTGAGATAATAGATG 2536
Query 611 -------------------------------------------------------------------------- 610
Sbjct 2537 AGTTTCCCACATTTGTCAGTGCTAAAGATGATTCTCCTAAGGAGTACACTGACCTAGAAGTATCCAACAAAAGT 2610
Query 611 -------------------------------------------------------------------------- 610
Sbjct 2611 GAAATTGCTAATGTCCAGAGCGGGGCCAATTCGTTGCCTTGCTCAGAATTGCCCTGTGACCTTTCTTTCAAGAA 2684
Query 611 -------------------------------------------------------------------------- 610
Sbjct 2685 TACATATCCTAAAGATGAAGCACATGTCTCAGATGAATTCTCCAAAAGTAGGTCCAGTGTATCTAAGGTGCCCT 2758
Query 611 -------------------------------------------------------------------------- 610
Sbjct 2759 TATTGCTTCCAAATGTTTCTGCTTTGGAATCTCAAATAGAAATGGGCAACATAGTTAAACCCAAAGTACTTACG 2832
Query 611 -------------------------------------------------------------------------- 610
Sbjct 2833 AAAGAAGCAGAGGAAAAACTTCCTTCTGATACAGAGAAAGAGGACAGATCCCTGACAGCTGTATTGTCAGCAGA 2906
Query 611 --------------CAGTTGTTGACCTCCTGTACTGGAGAGACATTAAGAAGACTGGAGTGGTGTTTGGTGCCA 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2907 GCTGAATAAAACTTCAGTTGTTGACCTCCTGTACTGGAGAGACATTAAGAAGACTGGAGTGGTGTTTGGTGCCA 2980
Query 671 GCCTATTCCTGCTGCTTTCATTGACAGTATTCAGCATTGTGAGCGTAACAGCCTACATTGCCTTGGCCCTGCTC 744
||.|||||||||||||.||..|||||||.|||||||||||.||.|||||.||||||||||||||||||||||||
Sbjct 2981 GCTTATTCCTGCTGCTGTCTCTGACAGTGTTCAGCATTGTCAGTGTAACGGCCTACATTGCCTTGGCCCTGCTC 3054
Query 745 TCTGTGACCATCAGCTTTAGGATATACAAGGGTGTGATCCAAGCTATCCAGAAATCAGATGAAGGCCACCCATT 818
||||||||.|||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3055 TCTGTGACTATCAGCTTTAGGATATATAAGGGTGTGATCCAAGCTATCCAGAAATCAGATGAAGGCCACCCATT 3128
Query 819 CAGGGCATATCTGGAATCTGAAGTTGCTATATCTGAGGAGTTGGTTCAGAAGTACAGTAATTCTGCTCTTGGTC 892
||||||||||.||||||||||||||||.|||||.|||||.|||||||||||.||.|||||||||||||||||||
Sbjct 3129 CAGGGCATATTTGGAATCTGAAGTTGCCATATCAGAGGAATTGGTTCAGAAATATAGTAATTCTGCTCTTGGTC 3202
Query 893 ATGTGAACTGCACGATAAAGGAACTCAGGCGCCTCTTCTTAGTTGATGATTTAGTTGATTCTCTGAAGTTTGCA 966
||||||||.||||.|||||.|||.|.|||||.|||||||||||||||||||||||||||||.||||||||||||
Sbjct 3203 ATGTGAACAGCACAATAAAAGAATTGAGGCGTCTCTTCTTAGTTGATGATTTAGTTGATTCCCTGAAGTTTGCA 3276
Query 967 GTGTTGATGTGGGTATTTACCTATGTTGGTGCCTTGTTTAATGGTCTGACACTACTGATTTTGGCTCTCATTTC 1040
||||||||||||||||||||.||.||||||||||||||.||||||.||||||||||||||||.|||||.||.||
Sbjct 3277 GTGTTGATGTGGGTATTTACTTACGTTGGTGCCTTGTTCAATGGTTTGACACTACTGATTTTAGCTCTGATCTC 3350
Query 1041 ACTCTTCAGTGTTCCTGTTATTTATGAACGGCATCAGGCACAGATAGATCATTATCTAGGACTTGCAAATAAGA 1114
||||||||||.||||||||||.|||||||||||||||||.|||||||||||||||||||||||||||||.||||
Sbjct 3351 ACTCTTCAGTATTCCTGTTATATATGAACGGCATCAGGCGCAGATAGATCATTATCTAGGACTTGCAAACAAGA 3424
Query 1115 ATGTTAAAGATGCTATGGCTAAAATCCAAGCAAAAATCCCTGGATTGAAGCGCAAAGCTGAA 1176
..|||||.|||||.|||||.||||||||||||||||||||||||||||||||||||||.|||
Sbjct 3425 GCGTTAAGGATGCCATGGCCAAAATCCAAGCAAAAATCCCTGGATTGAAGCGCAAAGCAGAA 3486
