Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_03831
- Subject:
- NR_148401.1
- Aligned Length:
- 3453
- Identities:
- 2178
- Gaps:
- 1191
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGCACCTGAAGCCCTTCGGGGCAGAGGAGGGCGGGGACTCGGGGCGGCTCTCAGCATCCGCCTGGAGCTCGTGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGCTGTGTTTCCGTGCTGTGGAGTTGCCTGGTCCGCTTCCTCCCCGCGAATAAGAATAAAAGATTCTGGAGGAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTGGAGAAGAGTGTATTCAGCCCCCAAACCACGAGATCAACAAAGAAATGCACAATTTTGAGGAAGAGTTAACT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGTCCCATATGTTATAGTATTTTTGAAGATCCTCGTGTACTGCCATGCTCTCATACATTTTGTAGAAATTGTTT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGAAAACATTCTTCAGGCATCTGGTAACTTTTATATATGGAGACCTTTACGAATTCCACTCAAGTGCCCTAATT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GCAGAAGTATTACTGAAATTGCTCCAACTGGCATTGAATCTTTACCTGTTAATTTTGCACTAAGGGCTATTATT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GAAAAGTACCAGCAAGAAGACCATCCAGATATTGTCACCTGCCCTGAACATTACAGGCAACCATTAAATGTTTA 518
Query 1 --------------------------------------------------------ATG---AGACTAAAGAT- 14
||| |..|||.||||
Sbjct 519 CTGTCTATTAGATAAAAAATTAGTTTGTGGTCATTGCCTTACCATAGGTCAACATCATGGTCATCCTATAGATG 592
Query 15 ATCT---------CT-TTTAAAAGAACCAAAG------CATCAAGAATT--------AGTAAGCTGTGTG---- 60
|.|| || |||.||||| |||| |.||||.||.| ||| ||..||
Sbjct 593 ACCTTCAAAGTGCCTATTTGAAAGA---AAAGGACACTCCTCAAAAACTGCTTGAACAGT----TGACTGACAC 659
Query 61 -GGCTGGAC------TAC------TGCTGAAGAGCTGTA-----------TTCATGTAGTG---ATGATCACCA 107
..|||||| ||| |..||||.|||||.| .||||...|.| ||||| |||
Sbjct 660 ACACTGGACAGATCTTACCCATCTTATTGAAAAGCTGAAAGAACAAAAATCTCATTCTGAGAAAATGAT--CCA 731
Query 108 ----GATAGTGAAGTGGAACTTGTTAACCAG-----------------TGAAAC-----AACTCAAATAGTAAA 155
|||| .||||..||||..|||| |||.|| |||..|||.|..|||
Sbjct 732 AGGCGATA------AGGAAGCTGTTCTCCAGTATTTTAAGGAGCTTAATGATACATTAGAACAGAAAAAAAAAA 799
Query 156 GCTTCCTGA----------TGAT-------ATTTACCCTATT------GATTTTCACTGGTTTCCAAAAAGTTT 206
|.|||||.| |||| ||.|| ||| ||.|.| || ||||.||| ||
Sbjct 800 GTTTCCTAACGGCTCTCTGTGATGTTGGCAATCTA----ATTAATCAAGAATAT-AC-----TCCACAAA--TT 861
Query 207 GGGTGTAAAGAA------ACAAACCCAG-GCAGAAAGCTT-------TGTC-CTCACAAGTTCT------GATG 259
| |||||| | ||..|.|| |||| .||||| ||.| ||.||||..||| ||.|
Sbjct 862 G-----AAAGAATGAAGGA-AATACGAGAGCAG-CAGCTTGAATTAATGGCACTGACAATATCTTTACAAGAAG 928
Query 260 ---------GTAAATTTCATCTGATTTCCAAGTT----------------AGGAAGAG----TGGAAAAAAG-- 302
.||||||||.|...| ||||| |.|.|.|| ||.||.||||
Sbjct 929 AGTCTCCACTTAAATTTCTTGAAA-----AAGTTGATGATGTACGCCAGCATGTACAGATCTTGAAACAAAGAC 997
Query 303 ----TGTAGAAGCTCA--CTGTGGA-----------GCAGTA--------CTTGCAGGAAGATGGAATTATGAA 351
|...||.|.||| |.||.|| | |||| .|||.|.||||| |||.|
Sbjct 998 CACTTCCTGAGGTTCAACCCGTTGAAATTTATCCTCG-AGTAAGCAAAATATTGAAAGAAGA-------ATGGA 1063
Query 352 G--GAACAGCATTAGTTACAGTTGGAGAAGAT---GGAC-------------AAATAAAAATTTGGTCAAAGAC 407
| |||||| .|.|||||.|| || |.|| ||||.|||||||...||||.|
Sbjct 1064 GCAGAACAG---------AAATTGGACAA-ATTAAGAACGTTCTCATTCCCAAAATGAAAATTTCTCCAAAAA- 1126
Query 408 TGGGATGCTTAGATCAACTTTAGCTCAGCAAGGAACACCAGTGTATTCAGTAGCGTGGGGCCCTGATTCAGAAA 481
||||| |||..|| |...||..|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 --GGATG------TCATGTT---CCTGGCCTGGAACACCAGTGTATTCAGTAGCGTGGGGCCCTGATTCAGAAA 1189
Query 482 AGGTTCTTTATACAGCAGGCAAGCAGCTAATCATTAAACCTCTTCAACCAAATGCTAAAGTTTTGCAGTGGAAA 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 AGGTTCTTTATACAGCAGGCAAGCAGCTAATCATTAAACCTCTTCAACCAAATGCTAAAGTTTTGCAGTGGAAA 1263
Query 556 GCTCATGATGGCATTATTTTAAAAGTAGATTGGAACTCGGTCAATGATCTTATTTTATCTGCTGGTGAAGACTG 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 GCTCATGATGGCATTATTTTAAAAGTAGATTGGAACTCGGTCAATGATCTTATTTTATCTGCTGGTGAAGACTG 1337
Query 630 TAAATATAAGGTATGGGATAGTTACGGCCGCCCACTGTACAATTCACAACCTCATGAGCATCCCATTACTTCAG 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1338 TAAATATAAGGTATGGGATAGTTACGGCCGCCCACTGTACAATTCACAACCTCATGAGCATCCCATTACTTCAG 1411
Query 704 TTGCCTGGGCTCCAGATGGAGAATTATTTGCTGTTGGATCGTTTCATACTTTACGCTTGTGTGATAAAACTGGG 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1412 TTGCCTGGGCTCCAGATGGAGAATTATTTGCTGTTGGATCGTTTCATACTTTACGCTTGTGTGATAAAACTGGG 1485
Query 778 TGGTCATATGCATTAGAAAAACCCAACACTGGCAGCATATTTAATATTGCATGGTCTATCGATGGCACTCAGAT 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1486 TGGTCATATGCATTAGAAAAACCCAACACTGGCAGCATATTTAATATTGCATGGTCTATCGATGGCACTCAGAT 1559
Query 852 TGCTGGAGCCTGTGGAAATGGACATGTCGTTTTTGCACATGTGGTGGAACAACATTGGGAGTGGAAAAATTTTC 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 TGCTGGAGCCTGTGGAAATGGACATGTCGTTTTTGCACATGTGGTGGAACAACATTGGGAGTGGAAAAATTTTC 1633
Query 926 AAGTAACATTAACGAAAAGAAGAGCCATGCAGGTTCGTAATGTTCTTAATGATGCAGTGGATTTACTGGAATTC 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1634 AAGTAACATTAACGAAAAGAAGAGCCATGCAGGTTCGTAATGTTCTTAATGATGCAGTGGATTTACTGGAATTC 1707
Query 1000 CGTGATAGAGTCATTAAAGCATCTTTGAACTATGCACACTTAGTTGTTTCAACGTCTCTTCAATGTTACGTGTT 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1708 CGTGATAGAGTCATTAAAGCATCTTTGAACTATGCACACTTAGTTGTTTCAACGTCTCTTCAATGTTACGTGTT 1781
Query 1074 CTCCACGAAGAACTGGAACACACCAATTATATTTGATCTCAAAGAAGGAACTGTTAGTTTGATTCTGCAGGCAG 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1782 CTCCACGAAGAACTGGAACACACCAATTATATTTGATCTCAAAGAAGGAACTGTTAGTTTGATTCTGCAGGCAG 1855
Query 1148 AAAGACATTTTCTTCTTGTAGATGGTAGTAGTATCTATTTATATTCATATGAAGGGCGCTTTATTTCATCTCCA 1221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1856 AAAGACATTTTCTTCTTGTAGATGGTAGTAGTATCTATTTATATTCATATGAAGGGCGCTTTATTTCATCTCCA 1929
Query 1222 AAATTTCCTGGAATGAGAACAGATATTCTGAATGCACAGACTGTGTCTTTGAGTAATGATACCATAGCAATAAG 1295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1930 AAATTTCCTGGAATGAGAACAGATATTCTGAATGCACAGACTGTGTCTTTGAGTAATGATACCATAGCAATAAG 2003
Query 1296 AGACAAAGCTGATGAAAAAATAATCTTCCTCTTTGAGGCATCAACCGGAAAGCCGTTAGGTGATGGAAAGTTTC 1369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2004 AGACAAAGCTGATGAAAAAATAATCTTCCTCTTTGAGGCATCAACCGGAAAGCCGTTAGGTGATGGAAAGTTTC 2077
Query 1370 TTTCTCATAAGAATGAAATCTTGGAAATTGCTCTGGATCAAAAAGGACTTACCAATGATAGAAAAATTGCTTTC 1443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2078 TTTCTCATAAGAATGAAATCTTGGAAATTGCTCTGGATCAAAAAGGACTTACCAATGATAGAAAAATTGCTTTC 2151
Query 1444 ATTGATAAAAATAGAGATCTCTGTATCACTTCTGTGAAACGATTTGGGAAGGAAGAACAAATTATCAAGCTTGG 1517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2152 ATTGATAAAAATAGAGATCTCTGTATCACTTCTGTGAAACGATTTGGGAAGGAAGAACAAATTATCAAGCTTGG 2225
Query 1518 AACAATGGTGCATACTTTGGCATGGAACGATACATGCAATATCCTTTGTGGACTTCAAGATACTCGATTTATAG 1591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2226 AACAATGGTGCATACTTTGGCATGGAACGATACATGCAATATCCTTTGTGGACTTCAAGATACTCGATTTATAG 2299
Query 1592 TGTGGTATTACCCCAATACAGTTTATGTGGACAGAGACATTTTGCCTAAAACATTATATGAAAGGGATGCAAGT 1665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2300 TGTGGTATTACCCCAATACAGTTTATGTGGACAGAGACATTTTGCCTAAAACATTATATGAAAGGGATGCAAGT 2373
Query 1666 GAATTTAGTAAAAATCCCCATATTGTGAGTTTTGTTGGAAATCAAGTAACTATTAGAAGAGCTGATGGCTCCCT 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2374 GAATTTAGTAAAAATCCCCATATTGTGAGTTTTGTTGGAAATCAAGTAACTATTAGAAGAGCTGATGGCTCCCT 2447
Query 1740 GGTTCACATCAGCATAACACCATATCCTGCTATTCTCCATGAATATGTAAGCAGTTCAAAATGGGAAGATGCTG 1813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2448 GGTTCACATCAGCATAACACCATATCCTGCTATTCTCCATGAATATGTAAGCAGTTCAAAATGGGAAGATGCTG 2521
Query 1814 TGAGACTTTGTCGCTTTGTTAAGGAGCAAACCATGTGGGCTTGTCTAGCTGCTATGGCAGTTGCTAATCGAGAT 1887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2522 TGAGACTTTGTCGCTTTGTTAAGGAGCAAACCATGTGGGCTTGTCTAGCTGCTATGGCAGTTGCTAATCGAGAT 2595
Query 1888 ATGACTACTGCAGAAATAGCCTATGCAGCAATTGGTGAAATTGATAAGGTTCAGTACATCAATTCTATAAAAAA 1961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2596 ATGACTACTGCAGAAATAGCCTATGCAGCAATTGGTGAAATTGATAAGGTTCAGTACATCAATTCTATAAAAAA 2669
Query 1962 TCTTCCATCTAAAGAATCAAAAATGGCCCACATACTACTGTTTAGTGGGAACATACAGGAGGCTGAAATAGTAC 2035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2670 TCTTCCATCTAAAGAATCAAAAATGGCCCACATACTACTGTTTAGTGGGAACATACAGGAGGCTGAAATAGTAC 2743
Query 2036 TTCTTCAGGCTGGCCTTGTTTATCAAGCAATCCAGATCAATATTAATCTCTACAACTGGGAAAGGGCACTGGAA 2109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2744 TTCTTCAGGCTGGCCTTGTTTATCAAGCAATCCAGATCAATATTAATCTCTACAACTGGGAAAGGGCACTGGAA 2817
Query 2110 TTGGCTGTAAAATACAAAACACATGTTGATACAGTTCTTGCTTACCGTCAAAAGTTTTTGGAGACATTTGGTAA 2183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2818 TTGGCTGTAAAATACAAAACACATGTTGATACAGTTCTTGCTTACCGTCAAAAGTTTTTGGAGACATTTGGTAA 2891
Query 2184 ACAGGAAACTAATAAACGATACTTGCATTATGCAGAAGGTCTCCAAATAGATTGGGAGAAAATCAAAGCCAAAA 2257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2892 ACAGGAAACTAATAAACGATACTTGCATTATGCAGAAGGTCTCCAAATAGATTGGGAGAAAATCAAAGCCAAAA 2965
Query 2258 TTGAGATGGAAATTACAAAAGAAAGAGAGCAATCATCAAGCAGCCAATCCAGCAAGAGTATAGGTTTAAAGCCC 2331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2966 TTGAGATGGAAATTACAAAAGAAAGAGAGCAATCATCAAGCAGCCAATCCAGCAAGAGTATAGGTTTAAAGCCC 3039
Query 2332 -------------------------------------------------------------------------- 2331
Sbjct 3040 TAAATGCCATGCGTATCTTTAAGAAATTTTATCTTTTGAAACACGTTCTGATTAACCAAGGGGCGTGTCACAGA 3113
Query 2332 -------------------------------------------------------------------------- 2331
Sbjct 3114 ACAGGAAACTGATACAATGACACTTGTTTCTTAAGAGAAGCTGATTGAATCCTGTAGCACATTACTGCACAATT 3187
Query 2332 -------------------------------------------------------------------------- 2331
Sbjct 3188 AATGGCTTTAAACGAGTTACAAGTCGTAAGTTCTTATGTTTTGGATCATGTTGTGGAATGTATTCCAAATGAAA 3261
Query 2332 -------------------------------------------------------------------------- 2331
Sbjct 3262 AATGGAGGAGAAAGTGCACAACATCATATGCTTCATGGTATGGCATATACATGTCAATTATTTTTACATATAAC 3335
Query 2332 ------------------------------------------------- 2331
Sbjct 3336 TGTGATGAATGATACAATTAAAAGCTATACTACAAAAAAAAAAAAAAAA 3384