Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_04000
- Subject:
- NR_146195.2
- Aligned Length:
- 3098
- Identities:
- 1296
- Gaps:
- 1802
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AATCGCGCCCGCTCCGACGTGTCCAGGTCCGCGGCCCCGGGAGCTTGGCGCGGCCCGGCCTGGATGCGCTGGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGAGGGTGCAGGGGAGGGCACGGCGCCGCTTGCTTGGCCTGCGCACCCGGACCTAGAAGCCGGGACGAGCCGGG 148
Query 1 --------------------------------------------------ATGACTGAACTACAGCAAGATGTG 24
||||||||||||||||||||||||
Sbjct 149 GCAGAGCCAGGCGCGCGGAAGTCTGAAGGTGCCCTCCAGACACGGCCCCGATGACTGAACTACAGCAAGATGTG 222
Query 25 GAAGACACAAAGCCTGCGAAAGTGCTCGGGAAGAGGGAGAGCAAACTTGGCTCAGCCCACTCAGAGGCTGAGAA 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GAAGACACAAAGCCTGCGAAAGTGCTCGGGAAGAGGGAGAGCAAACTTGGCTCAGCCCACTCAGAGGCTGAGAA 296
Query 99 TGGTGTGGAGGAGAAAAAGAAAGCCTGCAGGTCGCCAACAGCCCAATCCCCTACCCCATCTGTGGAGGCGGACT 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TGGTGTGGAGGAGAAAAAGAAAGCCTGCAGGTCGCCAACAGCCCAATCCCCTACCCCATCTGTGGAGGCGGACT 370
Query 173 CCCCAGACCAGAAGAAAATCATTAGCCTATG------------------------------------------- 203
|||||||||||||||||||||||||||||||
Sbjct 371 CCCCAGACCAGAAGAAAATCATTAGCCTATGCCCATATCTTCTCTCCAAATCTATGCTTCATTCAGGACCAAGA 444
Query 204 GTCAAAATCCAGTTTTGATGGTGCCTCTTTAGCAAGTGATAAGAACGACTGTAAAACAGAAAGCAAAAATGACC 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GTCAAAATCCAGTTTTGATGGTGCCTCTTTAGCAAGTGATAAGAACGACTGTAAAACAGAAAGCAAAAATGACC 518
Query 278 CTAAGACTGAAAGAAAAAAGTCTTCATCTTCCAGCCAGTACAAGGCCAATATGCACTTTCACAAGTTGTTTCTT 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CTAAGACTGAAAGAAAAAAGTCTTCATCTTCCAGCCAGTACAAGGCCAATATGCACTTTCACAAGTTGTTTCTT 592
Query 352 AGTGTCCCAACGGAGGAACCACTGAAGCAAAGCTTTACCTGTGCTCTACAGAAAGAAATACTATACCAAGGAAA 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AGTGTCCCAACGGAGGAACCACTGAAGCAAAGCTTTACCTGTGCTCTACAGAAAGAAATACTATACCAAGGAAA 666
Query 426 GCTCTTTGTATCAGAAAACTGGATTTGTTTTCATTCCAAAGTCTTTGGAAAAGACACAAAGATCTCTATTCCAG 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GCTCTTTGTATCAGAAAACTGGATTTGTTTTCATTCCAAAGTCTTTGGAAAAGACACAAAGATCTCTATTCCAG 740
Query 500 CTTTCTCGGTAACCCTAATAAAGAAAACCAAAACTGCTCTTCTAGTGCCAAACGCCCTGATCATAGCAACAGTC 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CTTTCTCGGTAACCCTAATAAAGAAAACCAAAACTGCTCTTCTAGTGCCAAACGCCCTGATCATAGCAACAGTC 814
Query 574 ACAGACAGGTACATATTTGTCTCCTTACTCTCCAGAGATTCAACTTACAAACTACTAAAATCTGTGTGTGGACA 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 ACAGACAGGTACATATTTGTCTCCTTACTCTCCAGAGATTCAACTTACAAACTACTAAAATCTGTGTGTGGACA 888
Query 648 CTTAGAAAATACAAGTGTTGGTAACAGTCCCAATCCATCTTCTGCTGAAAACAGTTTCCGAGCAGACCGCCCTT 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CTTAGAAAATACAAGTGTTGGTAACAGTCCCAATCCATCTTCTGCTGAAAACAGTTTCCGAGCAGACCGCCCTT 962
Query 722 CATCTCTGCCTCTGGATTTCAATGATGAATTCTCAGATCTGGATGGAGTGGTTCAACAAAGAAGGCAAGACATG 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CATCTCTGCCTCTGGATTTCAATGATGAATTCTCAGATCTGGATGGAGTGGTTCAACAAAGAAGGCAAGACATG 1036
Query 796 GAAGGATATAGCAGTTCTGGTTCTCAAACTCCTGAATCTGAGAACTCTCGAGATTTCCATGCGACAGAATCCCA 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GAAGGATATAGCAGTTCTGGTTCTCAAACTCCTGAATCTGAGAACTCTCGAGATTTCCATGCGACAGAATCCCA 1110
Query 870 AACAGTTCTGAATGTCTCCAAGGGAGAAGCAAAGCCAACTCGGGCAGATGCCCATGTGAACAGAGTACCTGAAG 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 AACAGTTCTGAATGTCTCCAAGGGAGAAGCAAAGCCAACTCGGGCAGATGCCCATGTGAACAGAGTACCTGAAG 1184
Query 944 GAAAAGCCAAGAGTCTCCCTGTACAGGGTCTGTCAGAAACTGTTGGAATCTTACATAAAGTCAAGTCTCAGAAA 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GAAAAGCCAAGAGTCTCCCTGTACAGGGTCTGTCAGAAACTGTTGGAATCTTACATAAAGTCAAGTCTCAGAAA 1258
Query 1018 TGTCCGATGCTTCACCATATTCTTATATTCTATGCAATTGTTGTCTGTGCACTAATCATCTCGACCTTCTACAT 1091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TGTCCGATGCTTCACCATATTCTTATATTCTATGCAATTGTTGTCTGTGCACTAATCATCTCGACCTTCTACAT 1332
Query 1092 GAGATACAGAATTAATACTCTGGAGGAGCAGCTGGGGTTACTAACCTCCATTGTGGACACCCATAATACTGAAC 1165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GAGATACAGAATTAATACTCTGGAGGAGCAGCTGGGGTTACTAACCTCCATTGTGGACACCCATAATACTGAAC 1406
Query 1166 AGGCAGCACCATCTGGCCTGAGGTCACAAGTACAATTCAATGTGGAGGTTCTCTGTCAAGAGCTTACAGCTAAC 1239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 AGGCAGCACCATCTGGCCTGAGGTCACAAGTACAATTCAATGTGGAGGTTCTCTGTCAAGAGCTTACAGCTAAC 1480
Query 1240 ATAGTGAAATTAGAAA---------------------------------------------------------- 1255
||||||||||||||||
Sbjct 1481 ATAGTGAAATTAGAAAAGTGATATTCTTTGGATTAGAAACACATGGGATCCTGCCGCCTTCTTTTGTGTTTCTT 1554
Query 1256 -------------------------------------------------------------------------- 1255
Sbjct 1555 CCCACTCTCCCGCTGGGCCTGGCCGGGACACCACATTCTGTAACCAGGGAACTGAAAACAGAAGAGCTTGTTCA 1628
Query 1256 ------------------AGATACAAAATAACTTACAGAAGTTGCTTGAGAATGGTGAC--------------- 1296
|||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 CAGCAGGCAAACAGCCTCAGATACAAAATAACTTACAGAAGTTGCTTGAGAATGGTGACTGATCGACCAGATTG 1702
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 1703 CTTGGGCCATCGGAATACCTCATGTTTCCCTTTGAAGAAGGTGCTTCCTGAGGCGTTTTGTTTGAGTGCACCCT 1776
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 1777 GCTGGTCAGAGGTGCAAGCAGATGAGAATCCAGACATTGCATGTGGAGGTCTCCAGCTCAGGAAAGTGAGGAGG 1850
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 1851 GAAATAATTTTGGTTCTTGTGCAATAAAAGTTGACCTTGACTCTCTGAGGAAGATTTTGCTGCTTTTGCCTGAA 1924
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 1925 GAAAACAGACCCATCTCTGGAGGTCTCAGGAAGGGCCCAGCGAACACACTCTCTTGGATAATTACCACGATGGC 1998
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 1999 GTCAGCAAACACTCCACCCTGTGCCTTTTTAGTCCTTCCCGCCCTCCTGCCTCTCCCTTACACCCCTCTTAACG 2072
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2073 ACTTTCAAACTAAAGGATACATCATATACTGACAAACTCAATGTGGTCCTTTCAAGAATTAGCCATGAGTCTCA 2146
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2147 AAAAGGCAATAAATGGCTCTAAGTGGACAGGTTTGCTTCAAACAAGTAACATCTACATTTTGTCTTTTTTTTTT 2220
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2221 CAGTTCTCCTGTTATGTTCTGGTTGAAATCACCTGTGTGTCTTAATTTCTCAATTCCTTTTTGGCAAGAATATC 2294
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2295 AAGCAAGGTGAATTTAACATTATGTTTATGTTTTGTTTTGTTGCTGTAACTAATAGTTAATTGGACTGATTCTT 2368
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2369 ACCCAGCCCTGGTCAAGAATCTGTGAGGCATGTGACTGAAGTACTAAATTAAACTTATTTTGAAACCAAACCTA 2442
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2443 ATTTTTAAGCCAAAAGGTGTAATAGTGATTTAATACAGGATGAAAAACACTGAATTTTTAAGACTGTAGGTGGA 2516
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2517 CTATGTTAGTAGTTTTCAAGCAGGATGTCTGTATTCAGCATTCAATAATGCTAAAATCCCTTTCAGCATGAAAT 2590
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2591 TTGTATGTTTTTATCCTTTGCTGACTAAAATAAAATAACTGGTGGTTTGCTAACTATTTACCATATGGGTTGGC 2664
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2665 TGGTTTTTATTAATAATTGTTTAGGGTATCATAAGATCTGTAAGTACAAAGGATATTCTGTTTCTATCTGCAAT 2738
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2739 GCATTTGATAATCATTTCTATGAAATGTATTTTATTTAATCAGATAAGCTAATAAGCGAATTGGTTACATCGTT 2812
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2813 TGTATCTGTTGGCCTAGTGGACAGCTGTGCCTGGTGCACCTCTGGCTTTTAATAAATACTCATTGGTTGAAACA 2886
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2887 CCCTGCTAACACTGTGTTTTGTCAGTTCGTAAATTCCTTTAACCAAGACTTAACTATGCTTTTTAACTCTTTTT 2960
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2961 CCACCTGCCATCTACTACTACCAACTCACTTATACTTCCTTCCTCCCAAGTAATCATTTCAAAACTAAAAAAGG 3034
Query 1297 ---------------------------------------------------------------- 1296
Sbjct 3035 ATTTAAGTTCTTGGGTTACAACGGTTTAAAGGAAAGAAAATGAACTTTGAAGTCAAAAAAAAAA 3098
