Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_04000
- Subject:
- NR_146196.2
- Aligned Length:
- 3055
- Identities:
- 1296
- Gaps:
- 1759
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AATCGCGCCCGCTCCGACGTGTCCAGGTCCGCGGCCCCGGGAGCTTGGCGCGGCCCGGCCTGGATGCGCTGGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGAGGGTGCAGGGGAGGGCACGGCGCCGCTTGCTTGGCCTGCGCACCCGGACCTAGAAGCCGGGACGAGCCGGG 148
Query 1 --------------------------------------------------ATGACTGAACTACAGCAAGATGTG 24
||||||||||||||||||||||||
Sbjct 149 GCAGAGCCAGGCGCGCGGAAGTCTGAAGGTGCCCTCCAGACACGGCCCCGATGACTGAACTACAGCAAGATGTG 222
Query 25 GAAGACACAAAGCCTGCGAAAGTGCTCGGGAAGAGGGAGAGCAAACTTGGCTCAGCCCACTCAGAGGCTGAGAA 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GAAGACACAAAGCCTGCGAAAGTGCTCGGGAAGAGGGAGAGCAAACTTGGCTCAGCCCACTCAGAGGCTGAGAA 296
Query 99 TGGTGTGGAGGAGAAAAAGAAAGCCTGCAGGTCGCCAACAGCCCAATCCCCTACCCCATCTGTGGAGGCGGACT 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TGGTGTGGAGGAGAAAAAGAAAGCCTGCAGGTCGCCAACAGCCCAATCCCCTACCCCATCTGTGGAGGCGGACT 370
Query 173 CCCCAGACCAGAAGAAAATCATTAGCCTATGGTCAAAATCCAGTTTTGATGGTGCCTCTTTAGCAAGTGATAAG 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CCCCAGACCAGAAGAAAATCATTAGCCTATGGTCAAAATCCAGTTTTGATGGTGCCTCTTTAGCAAGTGATAAG 444
Query 247 AACGACTGTAAAACAGAAAGCAAAAATGACCCTAAGACTGAAAGAAAAAAGTCTTCATCTTCCAGCCAGTACAA 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AACGACTGTAAAACAGAAAGCAAAAATGACCCTAAGACTGAAAGAAAAAAGTCTTCATCTTCCAGCCAGTACAA 518
Query 321 GGCCAATATGCACTTTCACAAGTTGTTTCTTAGTGTCCCAACGGAGGAACCACTGAAGCAAAGCTTTACCTGTG 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GGCCAATATGCACTTTCACAAGTTGTTTCTTAGTGTCCCAACGGAGGAACCACTGAAGCAAAGCTTTACCTGTG 592
Query 395 CTCTACAGAAAGAAATACTATACCAAGGAAAGCTCTTTGTATCAGAAAACTGGATTTGTTTTCATTCCAAAGTC 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CTCTACAGAAAGAAATACTATACCAAGGAAAGCTCTTTGTATCAGAAAACTGGATTTGTTTTCATTCCAAAGTC 666
Query 469 TTTGGAAAAGACACAAAGATCTCTATTCCAGCTTTCTCGGTAACCCTAATAAAGAAAACCAAAACTGCTCTTCT 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TTTGGAAAAGACACAAAGATCTCTATTCCAGCTTTCTCGGTAACCCTAATAAAGAAAACCAAAACTGCTCTTCT 740
Query 543 AGTGCCAAACGCCCTGATCATAGCAACAGTCACAGACAGGTACATATTTGTCTCCTTACTCTCCAGAGATTCAA 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AGTGCCAAACGCCCTGATCATAGCAACAGTCACAGACAGGTACATATTTGTCTCCTTACTCTCCAGAGATTCAA 814
Query 617 CTTACAAACTACTAAAATCTGTGTGTGGACACTTAGAAAATACAAGTGTTGGTAACAGTCCCAATCCATCTTCT 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CTTACAAACTACTAAAATCTGTGTGTGGACACTTAGAAAATACAAGTGTTGGTAACAGTCCCAATCCATCTTCT 888
Query 691 GCTGAAAACAGTTTCCGAGCAGACCGCCCTTCATCTCTGCCTCTGGATTTCAATGATGAATTCTCAGATCTGGA 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GCTGAAAACAGTTTCCGAGCAGACCGCCCTTCATCTCTGCCTCTGGATTTCAATGATGAATTCTCAGATCTGGA 962
Query 765 TGGAGTGGTTCAACAAAGAAGGCAAGACATGGAAGGATATAGCAGTTCTGGTTCTCAAACTCCTGAATCTGAGA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TGGAGTGGTTCAACAAAGAAGGCAAGACATGGAAGGATATAGCAGTTCTGGTTCTCAAACTCCTGAATCTGAGA 1036
Query 839 ACTCTCGAGATTTCCATGCGACAGAATCCCAAACAGTTCTGAATGTCTCCAAGGGAGAAGCAAAGCCAACTCGG 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 ACTCTCGAGATTTCCATGCGACAGAATCCCAAACAGTTCTGAATGTCTCCAAGGGAGAAGCAAAGCCAACTCGG 1110
Query 913 GCAGATGCCCATGTGAACAGAGTACCTGAAGGAAAAGCCAAGAGTCTCCCTGTACAGGGTCTGTCAGAAACTGT 986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GCAGATGCCCATGTGAACAGAGTACCTGAAGGAAAAGCCAAGAGTCTCCCTGTACAGGGTCTGTCAGAAACTGT 1184
Query 987 TGGAATCTTACATAAAGTCAAGTCTCAGAAATGTCCGATGCTTCACCATATTCTTATATTCTATGCAATTGTTG 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TGGAATCTTACATAAAGTCAAGTCTCAGAAATGTCCGATGCTTCACCATATTCTTATATTCTATGCAATTGTTG 1258
Query 1061 TCTGTGCACTAATCATCTCGACCTTCTACATGAGATACAGAATTAATACTCTGGAGGAGCAGCTGGGGTTACTA 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TCTGTGCACTAATCATCTCGACCTTCTACATGAGATACAGAATTAATACTCTGGAGGAGCAGCTGGGGTTACTA 1332
Query 1135 ACCTCCATTGTGGACACCCATAATACTGAACAGGCAGCACCATCTGGCCTGAGGTCACAAGTACAATTCAATGT 1208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 ACCTCCATTGTGGACACCCATAATACTGAACAGGCAGCACCATCTGGCCTGAGGTCACAAGTACAATTCAATGT 1406
Query 1209 GGAGGTTCTCTGTCAAGAGCTTACAGCTAACATAGTGAAATTAGAAA--------------------------- 1255
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 GGAGGTTCTCTGTCAAGAGCTTACAGCTAACATAGTGAAATTAGAAAAGTGATATTCTTTGGATTAGAAACACA 1480
Query 1256 -------------------------------------------------------------------------- 1255
Sbjct 1481 TGGGATCCTGCCGCCTTCTTTTGTGTTTCTTCCCACTCTCCCGCTGGGCCTGGCCGGGACACCACATTCTGTAA 1554
Query 1256 -------------------------------------------------AGATACAAAATAACTTACAGAAGTT 1280
|||||||||||||||||||||||||
Sbjct 1555 CCAGGGAACTGAAAACAGAAGAGCTTGTTCACAGCAGGCAAACAGCCTCAGATACAAAATAACTTACAGAAGTT 1628
Query 1281 GCTTGAGAATGGTGAC---------------------------------------------------------- 1296
||||||||||||||||
Sbjct 1629 GCTTGAGAATGGTGACTGATCGACCAGATTGCTTGGGCCATCGGAATACCTCATGTTTCCCTTTGAAGAAGGTG 1702
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 1703 CTTCCTGAGGCGTTTTGTTTGAGTGCACCCTGCTGGTCAGAGGTGCAAGCAGATGAGAATCCAGACATTGCATG 1776
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 1777 TGGAGGTCTCCAGCTCAGGAAAGTGAGGAGGGAAATAATTTTGGTTCTTGTGCAATAAAAGTTGACCTTGACTC 1850
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 1851 TCTGAGGAAGATTTTGCTGCTTTTGCCTGAAGAAAACAGACCCATCTCTGGAGGTCTCAGGAAGGGCCCAGCGA 1924
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 1925 ACACACTCTCTTGGATAATTACCACGATGGCGTCAGCAAACACTCCACCCTGTGCCTTTTTAGTCCTTCCCGCC 1998
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 1999 CTCCTGCCTCTCCCTTACACCCCTCTTAACGACTTTCAAACTAAAGGATACATCATATACTGACAAACTCAATG 2072
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2073 TGGTCCTTTCAAGAATTAGCCATGAGTCTCAAAAAGGCAATAAATGGCTCTAAGTGGACAGGTTTGCTTCAAAC 2146
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2147 AAGTAACATCTACATTTTGTCTTTTTTTTTTCAGTTCTCCTGTTATGTTCTGGTTGAAATCACCTGTGTGTCTT 2220
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2221 AATTTCTCAATTCCTTTTTGGCAAGAATATCAAGCAAGGTGAATTTAACATTATGTTTATGTTTTGTTTTGTTG 2294
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2295 CTGTAACTAATAGTTAATTGGACTGATTCTTACCCAGCCCTGGTCAAGAATCTGTGAGGCATGTGACTGAAGTA 2368
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2369 CTAAATTAAACTTATTTTGAAACCAAACCTAATTTTTAAGCCAAAAGGTGTAATAGTGATTTAATACAGGATGA 2442
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2443 AAAACACTGAATTTTTAAGACTGTAGGTGGACTATGTTAGTAGTTTTCAAGCAGGATGTCTGTATTCAGCATTC 2516
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2517 AATAATGCTAAAATCCCTTTCAGCATGAAATTTGTATGTTTTTATCCTTTGCTGACTAAAATAAAATAACTGGT 2590
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2591 GGTTTGCTAACTATTTACCATATGGGTTGGCTGGTTTTTATTAATAATTGTTTAGGGTATCATAAGATCTGTAA 2664
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2665 GTACAAAGGATATTCTGTTTCTATCTGCAATGCATTTGATAATCATTTCTATGAAATGTATTTTATTTAATCAG 2738
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2739 ATAAGCTAATAAGCGAATTGGTTACATCGTTTGTATCTGTTGGCCTAGTGGACAGCTGTGCCTGGTGCACCTCT 2812
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2813 GGCTTTTAATAAATACTCATTGGTTGAAACACCCTGCTAACACTGTGTTTTGTCAGTTCGTAAATTCCTTTAAC 2886
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2887 CAAGACTTAACTATGCTTTTTAACTCTTTTTCCACCTGCCATCTACTACTACCAACTCACTTATACTTCCTTCC 2960
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2961 TCCCAAGTAATCATTTCAAAACTAAAAAAGGATTTAAGTTCTTGGGTTACAACGGTTTAAAGGAAAGAAAATGA 3034
Query 1297 --------------------- 1296
Sbjct 3035 ACTTTGAAGTCAAAAAAAAAA 3055
