Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_04000
- Subject:
- NR_146197.2
- Aligned Length:
- 3058
- Identities:
- 1184
- Gaps:
- 1874
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AATCGCGCCCGCTCCGACGTGTCCAGGTCCGCGGCCCCGGGAGCTTGGCGCGGCCCGGCCTGGATGCGCTGGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGAGGGTGCAGGGGAGGGCACGGCGCCGCTTGCTTGGCCTGCGCACCCGGACCTAGAAGCCGGGACGAGCCGGG 148
Query 1 --------------------------------------------------ATGACTGAACTACAGCAAGATGTG 24
||||||||||||||||||||||||
Sbjct 149 GCAGAGCCAGGCGCGCGGAAGTCTGAAGGTGCCCTCCAGACACGGCCCCGATGACTGAACTACAGCAAGATGTG 222
Query 25 GAAGACACAAAGCCTGCGAAAGTGCTCGGGAAGAGGGAGAGCAAACTTGGCTCAGCCCACTCAGAGGCTGAGAA 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GAAGACACAAAGCCTGCGAAAGTGCTCGGGAAGAGGGAGAGCAAACTTGGCTCAGCCCACTCAGAGGCTGAGAA 296
Query 99 TGGTGTGGAGGAGAAAAAGAAAGCCTGCAGGTCGCCAACAGCCCAATCCCCTACCCCATCTGTGGAGGCGGACT 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TGGTGTGGAGGAGAAAAAGAAAGCCTGCAGGTCGCCAACAGCCCAATCCCCTACCCCATCTGTGGAGGCGGACT 370
Query 173 CCCCAGACCAGAAGAAAATCATTAGCCTATGGTCAAAATCCAGTTTTGATGGTGCCTCTTTAGCAAGTGATAAG 246
||||||||||||||||||||||||||||||
Sbjct 371 CCCCAGACCAGAAGAAAATCATTAGCCTAT-------------------------------------------- 400
Query 247 AACGACTGTAAAACAGAAAGCAAAAATGACCCTAAGACTGAAAGAAAAAAGTCTTCATCTTCCAGCCAGTACAA 320
||||||
Sbjct 401 --------------------------------------------------------------------GTACAA 406
Query 321 GGCCAATATGCACTTTCACAAGTTGTTTCTTAGTGTCCCAACGGAGGAACCACTGAAGCAAAGCTTTACCTGTG 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 GGCCAATATGCACTTTCACAAGTTGTTTCTTAGTGTCCCAACGGAGGAACCACTGAAGCAAAGCTTTACCTGTG 480
Query 395 CTCTACAGAAAGAAATACTATACCAAGGAAAGCTCTTTGTATCAGAAAACTGGATTTGTTTTCATTCCAAAGTC 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTCTACAGAAAGAAATACTATACCAAGGAAAGCTCTTTGTATCAGAAAACTGGATTTGTTTTCATTCCAAAGTC 554
Query 469 TTTGGAAAAGACACAAAGATCTCTATTCCAGCTTTCTCGGTAACCCTAATAAAGAAAACCAAAACTGCTCTTCT 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 TTTGGAAAAGACACAAAGATCTCTATTCCAGCTTTCTCGGTAACCCTAATAAAGAAAACCAAAACTGCTCTTCT 628
Query 543 AGTGCCAAACGCCCTGATCATAGCAACAGTCACAGACAGGTACATATTTGTCTCCTTACTCTCCAGAGATTCAA 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 629 AGTGCCAAACGCCCTGATCATAGCAACAGTCACAGACAGGTACATATTTGTCTCCTTACTCTCCAGAGATTCAA 702
Query 617 CTTACAAACTACTAAAATCTGTGTGTGGACACTTAGAAAATACAAGTGTTGGTAACAGTCCCAATCCATCTTCT 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 CTTACAAACTACTAAAATCTGTGTGTGGACACTTAGAAAATACAAGTGTTGGTAACAGTCCCAATCCATCTTCT 776
Query 691 GCTGAAAACAGTTTCCGAGCAGACCGCCCTTCATCTCTGCCTCTGGATTTCAATGATGAATTCTCAGATCTGGA 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 GCTGAAAACAGTTTCCGAGCAGACCGCCCTTCATCTCTGCCTCTGGATTTCAATGATGAATTCTCAGATCTGGA 850
Query 765 TGGAGTGGTTCAACAAAGAAGGCAAGACATGGAAGGATATAGCAGTTCTGGTTCTCAAACTCCTGAATCTGAGA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 TGGAGTGGTTCAACAAAGAAGGCAAGACATGGAAGGATATAGCAGTTCTGGTTCTCAAACTCCTGAATCTGAGA 924
Query 839 ACTCTCG---AGATTTCCATGCGACAGAATCCCAAACAGTTCTGAATGTCTCCAAGGGAGAAGCAAAGCCAACT 909
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 ACTCTCGAGTAGATTTCCATGCGACAGAATCCCAAACAGTTCTGAATGTCTCCAAGGGAGAAGCAAAGCCAACT 998
Query 910 CGGGCAGATGCCCATGTGAACAGAGTACCTGAAGGAAAAGCCAAGAGTCTCCCTGTACAGGGTCTGTCAGAAAC 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 CGGGCAGATGCCCATGTGAACAGAGTACCTGAAGGAAAAGCCAAGAGTCTCCCTGTACAGGGTCTGTCAGAAAC 1072
Query 984 TGTTGGAATCTTACATAAAGTCAAGTCTCAGAAATGTCCGATGCTTCACCATATTCTTATATTCTATGCAATTG 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 TGTTGGAATCTTACATAAAGTCAAGTCTCAGAAATGTCCGATGCTTCACCATATTCTTATATTCTATGCAATTG 1146
Query 1058 TTGTCTGTGCACTAATCATCTCGACCTTCTACATGAGATACAGAATTAATACTCTGGAGGAGCAGCTGGGGTTA 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 TTGTCTGTGCACTAATCATCTCGACCTTCTACATGAGATACAGAATTAATACTCTGGAGGAGCAGCTGGGGTTA 1220
Query 1132 CTAACCTCCATTGTGGACACCCATAATACTGAACAGGCAGCACCATCTGGCCTGAGGTCACAAGTACAATTCAA 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 CTAACCTCCATTGTGGACACCCATAATACTGAACAGGCAGCACCATCTGGCCTGAGGTCACAAGTACAATTCAA 1294
Query 1206 TGTGGAGGTTCTCTGTCAAGAGCTTACAGCTAACATAGTGAAATTAGAAA------------------------ 1255
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1295 TGTGGAGGTTCTCTGTCAAGAGCTTACAGCTAACATAGTGAAATTAGAAAAGTGATATTCTTTGGATTAGAAAC 1368
Query 1256 -------------------------------------------------------------------------- 1255
Sbjct 1369 ACATGGGATCCTGCCGCCTTCTTTTGTGTTTCTTCCCACTCTCCCGCTGGGCCTGGCCGGGACACCACATTCTG 1442
Query 1256 ----------------------------------------------------AGATACAAAATAACTTACAGAA 1277
||||||||||||||||||||||
Sbjct 1443 TAACCAGGGAACTGAAAACAGAAGAGCTTGTTCACAGCAGGCAAACAGCCTCAGATACAAAATAACTTACAGAA 1516
Query 1278 GTTGCTTGAGAATGGTGAC------------------------------------------------------- 1296
|||||||||||||||||||
Sbjct 1517 GTTGCTTGAGAATGGTGACTGATCGACCAGATTGCTTGGGCCATCGGAATACCTCATGTTTCCCTTTGAAGAAG 1590
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 1591 GTGCTTCCTGAGGCGTTTTGTTTGAGTGCACCCTGCTGGTCAGAGGTGCAAGCAGATGAGAATCCAGACATTGC 1664
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 1665 ATGTGGAGGTCTCCAGCTCAGGAAAGTGAGGAGGGAAATAATTTTGGTTCTTGTGCAATAAAAGTTGACCTTGA 1738
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 1739 CTCTCTGAGGAAGATTTTGCTGCTTTTGCCTGAAGAAAACAGACCCATCTCTGGAGGTCTCAGGAAGGGCCCAG 1812
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 1813 CGAACACACTCTCTTGGATAATTACCACGATGGCGTCAGCAAACACTCCACCCTGTGCCTTTTTAGTCCTTCCC 1886
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 1887 GCCCTCCTGCCTCTCCCTTACACCCCTCTTAACGACTTTCAAACTAAAGGATACATCATATACTGACAAACTCA 1960
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 1961 ATGTGGTCCTTTCAAGAATTAGCCATGAGTCTCAAAAAGGCAATAAATGGCTCTAAGTGGACAGGTTTGCTTCA 2034
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2035 AACAAGTAACATCTACATTTTGTCTTTTTTTTTTCAGTTCTCCTGTTATGTTCTGGTTGAAATCACCTGTGTGT 2108
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2109 CTTAATTTCTCAATTCCTTTTTGGCAAGAATATCAAGCAAGGTGAATTTAACATTATGTTTATGTTTTGTTTTG 2182
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2183 TTGCTGTAACTAATAGTTAATTGGACTGATTCTTACCCAGCCCTGGTCAAGAATCTGTGAGGCATGTGACTGAA 2256
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2257 GTACTAAATTAAACTTATTTTGAAACCAAACCTAATTTTTAAGCCAAAAGGTGTAATAGTGATTTAATACAGGA 2330
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2331 TGAAAAACACTGAATTTTTAAGACTGTAGGTGGACTATGTTAGTAGTTTTCAAGCAGGATGTCTGTATTCAGCA 2404
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2405 TTCAATAATGCTAAAATCCCTTTCAGCATGAAATTTGTATGTTTTTATCCTTTGCTGACTAAAATAAAATAACT 2478
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2479 GGTGGTTTGCTAACTATTTACCATATGGGTTGGCTGGTTTTTATTAATAATTGTTTAGGGTATCATAAGATCTG 2552
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2553 TAAGTACAAAGGATATTCTGTTTCTATCTGCAATGCATTTGATAATCATTTCTATGAAATGTATTTTATTTAAT 2626
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2627 CAGATAAGCTAATAAGCGAATTGGTTACATCGTTTGTATCTGTTGGCCTAGTGGACAGCTGTGCCTGGTGCACC 2700
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2701 TCTGGCTTTTAATAAATACTCATTGGTTGAAACACCCTGCTAACACTGTGTTTTGTCAGTTCGTAAATTCCTTT 2774
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2775 AACCAAGACTTAACTATGCTTTTTAACTCTTTTTCCACCTGCCATCTACTACTACCAACTCACTTATACTTCCT 2848
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2849 TCCTCCCAAGTAATCATTTCAAAACTAAAAAAGGATTTAAGTTCTTGGGTTACAACGGTTTAAAGGAAAGAAAA 2922
Query 1297 ------------------------ 1296
Sbjct 2923 TGAACTTTGAAGTCAAAAAAAAAA 2946
