Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_04142
- Subject:
- XR_001740272.1
- Aligned Length:
- 5077
- Identities:
- 1076
- Gaps:
- 4001
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGCTCTAGTCAAGTGCCAAAAGAGCCCAATGTGTGTTCGGGTTTCAATTCTCCAGTCAGCGTCAGAGTTGGAGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCTCAATTTTAAAGAAGGCAAAGCCATGGTCATCGTTGCGGGTAAGGAACAACGCAGAAGCCTCTTCCACCCCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AAATTTAATGCAACAGCAGGCGGAAGACCTGCAGGGTCCCGTTCAGAAAAAGGGCCGTCAGACTGTCGAGCCTA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGAATAAAAAGACCCTGTTTCTCTTAGATACCCGGTTAGCAAGGCAACATCGCTGGCCTCCTGCCCTGGACACT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TATCACCCCGGTGCTGCTGCGGCCGGGTTTAGCCGGCCCAGCGAGGAAGGAAGCCGAAAGAGCCAGGTTTTTGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGAGGGGGAGCGATGTCTGCGACGCACCGGAAGCGGCTCCGAGGAAGGCCTGTGGGAGTCTCGGAGACGTGTCT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GTCTGTGAGGCGCTGGGTGCACGTCCCCAGGGCTCTGGGCTAGGAAGGCAGCGGCGAGGTGCCTCCCCACGTAC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CCCTCGCGGGCCCAGCCGAGCAACGTGGGGCGAAGGCGGCGGCGAAGGCCCGGGCTGGGAGCGTTGGCGGCCGG 592
Query 1 ----------ATGGCGGAGTCTGTGGAGCGCCTGCAGCAGCGGGTCCAGGAGCTGGAGCGGGAACTTGCCCAGG 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AGTCCCAGCCATGGCGGAGTCTGTGGAGCGCCTGCAGCAGCGGGTCCAGGAGCTGGAGCGGGAACTTGCCCAGG 666
Query 65 AGAGGAGTCTGCAGGTCCCGAGGAGCGGCGACGGAGGGGGCGGCCGGGTCCGCATCGAGAAGATGAGCTCAGAG 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AGAGGAGTCTGCAGGTCCCGAGGAGCGGCGACGGAGGGGGCGGCCGGGTCCGCATCGAGAAGATGAGCTCAGAG 740
Query 139 GTGGTGGATTCGAATCCCTACAGCCGCTTGATGGCATTGAAACGAATGGGAATTGTAAGCGACTATGAGAAAAT 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GTGGTGGATTCGAATCCCTACAGCCGCTTGATGGCATTGAAACGAATGGGAATTGTAAGCGACTATGAGAAAAT 814
Query 213 CCGTACCTTTGCCGTAGCAATAGTAGGTGTTGGTGGAGTAGGTAGTGTGACTGCTGAAATGCTGACAAGATGTG 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CCGTACCTTTGCCGTAGCAATAGTAGGTGTTGGTGGAGTAGGTAGTGTGACTGCTGAAATGCTGACAAGATGTG 888
Query 287 GCATTGGTAAGTTGCTACTCTTTGATTATGACAAGGTGGAACTAGCCAATATGAATAGACTTTTCTTCCAACCT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GCATTGGTAAGTTGCTACTCTTTGATTATGACAAGGTGGAACTAGCCAATATGAATAGACTTTTCTTCCAACCT 962
Query 361 CATCAAGCAGGATTAAGTAAAGTTCAAGCAGCAGAACATACTCTGAGGAACATTAATCCTGATGTTCTTTTTGA 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CATCAAGCAGGATTAAGTAAAGTTCAAGCAGCAGAACATACTCTGAGGAACATTAATCCTGATGTTCTTTTTGA 1036
Query 435 AGTACACAACTATAATATAACCACAGTGGAAAACTTTCAACATTTCATGGATAGAATAAGTAATGGTGGGTTAG 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AGTACACAACTATAATATAACCACAGTGGAAAACTTTCAACATTTCATGGATAGAATAAGTAATGGTGGGTTAG 1110
Query 509 AAGAAGGAAAACCTGTTGATCTAGTTCTTAGCTGTGTGGACAATTTTGAAGCTCGAATGACAATAAATACAGCT 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 AAGAAGGAAAACCTGTTGATCTAGTTCTTAGCTGTGTGGACAATTTTGAAGCTCGAATGACAATAAATACAGCT 1184
Query 583 TGTAATGAACTTGGACAAACATGGATGGAATCTGGGGTCAGTGAAAATGCAGTTTCAGGGCATATACAGCTTAT 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TGTAATGAACTTGGACAAACATGGATGGAATCTGGGGTCAGTGAAAATGCAGTTTCAGGGCATATACAGCTTAT 1258
Query 657 AATTCCTGGAGAATCTGCTTGTTTTGCGTGTGCTCCACCACTTGTAGTTGCTGCAAATATTGATGAAAAGACTC 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AATTCCTGGAGAATCTGCTTGTTTTGCGTGTGCTCCACCACTTGTAGTTGCTGCAAATATTGATGAAAAGACTC 1332
Query 731 TGAAACGAGAAGGTGTTTGTGCAGCCAGTCTTCCTACCACTATGGGTGTGGTTGCTGGGATCTTAGTACAAAAC 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 TGAAACGAGAAGGTGTTTGTGCAGCCAGTCTTCCTACCACTATGGGTGTGGTTGCTGGGATCTTAGTACAAAAC 1406
Query 805 GTGTTAAAGTTTCTGTTAAATTTTGGTACTGTTAGTTTTTACCTTGGATACAATGCAATGCAGGATTTTTTTCC 878
||||||||
Sbjct 1407 GTGTTAAA------------------------------------------------------------------ 1414
Query 879 TACTATGTCCATGAAGCCAAATCCTCAGTGTGATGACAGAAATTGCAGGAAGCAGCAGGAGGAATATAAGAAAA 952
||||
Sbjct 1415 ----------------------------------------------------------------------AAAA 1418
Query 953 AGGTAGCAGCACTGCCTAAACAAGAGGTTATACAAGAAGAGGAAGAGATAATCCATGAAGATAATGAATGGGGT 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1419 AGGTAGCAGCACTGCCTAAACAAGAGGTTATACAAGAAGAGGAAGAGATAATCCATGAAGATAATGAATGGGGT 1492
Query 1027 ATTGAGCTGGTATCTGAGGTTTCAGAAGAGGAACTGAAAAATTTTTCAGGTCCAGTTCCAGACTTACCTGAAGG 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 ATTGAGCTGGTATCTGAGGTTTCAGAAGAGGAACTGAAAAATTTTTCAGGTCCAGTTCCAGACTTACCTGAAGG 1566
Query 1101 AATTACAGTGGCATACACAATTCCAAAAAAGCAAGAAGATTCTGTCACTGAGTTAACAGTGGAAGATTCTGGTG 1174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1567 AATTACAGTGGCATACACAATTCCAAAAAAGCAAGAAGATTCTGTCACTGAGTTAACAGTGGAAGATTCTGGTG 1640
Query 1175 AAAGCTTGGAAGACCTCATGGCCAAAATGAAGAATATG------------------------------------ 1212
||||||||||||||||||||||||||||||||||||||
Sbjct 1641 AAAGCTTGGAAGACCTCATGGCCAAAATGAAGAATATGTAGATAATGGACTGGGATATATTGTATTTCTCATGT 1714
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 1715 TAAAGCCTCTTCCCTTGAAATTAAAAAAAAATTTTAACTGATAAAACTTAGGGCAACATTAATTAATGTATATT 1788
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 1789 CTTACCTGAATTGTTATACTTTTTGAAAATCCTGTGACTTGCCTGTTTCTCCCCGCTCCAACGAAATCATTAAC 1862
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 1863 TCTCCTAAAATGTGTTTCATTCTAGTAAGAAAACCTCAAAGGATATTGTAGGATATAAATCTTACTTGAAAACA 1936
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 1937 TAGCTGTTGAAATGTTTTGGCCTTTTGGAGTGGGGGAAGGACAAATCTGATCCTGTAATCTTTTTCTTTCCAGT 2010
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 2011 AATCCCTTGTGTCTGTTGCATGAGGACATGGACAATAAAGTAGTATATGATCCTCAGATACAGGGAGAAGGACA 2084
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 2085 AGGCATACAGCTTATTGATTAGAGCTGGCAAGCATCTGCTCATTATGTTTGGAATTGCTTTCTATAAGAAAATT 2158
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 2159 GCCCACTACTACTAACTTGATCAACAATGAATTCAAAATAGTTAACCTATGAAATAACATCCTCTCAAATGTTT 2232
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 2233 GCTGATGAAGTACAAGTTGAAATGTAGTTATTGGAAAAGTCTGTAACCTGTGGATCATATATATTCAAAGTGAG 2306
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 2307 ACAAAGGCAAATAAAAAGCAGCTATTTTCATGAATAGACAAAGTTGATTTCAGGAAGTATAAATTATATTCTGC 2380
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 2381 ACCGAACAAGGAACAGAAATTATTGCATCTGTGGAACATATATCTGGAGTTACTATACTTTACTGAAGAGCAAG 2454
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 2455 GCATAAATTTAGACTAAAATCCATCCAGATTACACTCATTCTTTAGGCTACTCCTGGATACTTCATTTAAATTT 2528
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 2529 GATTTTCGAGGTAGTGAGATGTCGGCAAGGTTTGTCCTGTATATTAGGAATAAAGGAAAAGTTCTAAACTGCCT 2602
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 2603 CTGCAATGACTTGTAGTCAGTGGAAGAGTATCACTTTCCCCTGATCATGACCACTAAACTGTAAATTGATATAA 2676
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 2677 ATTAGTTTTCTCTCGAGTTACACCCAAGTAATGAAGACTTAAGAGAACCTTGGTTGAAATAAATTTCCAATAGT 2750
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 2751 TTGGAGACTCATAAATACCATGCAGGTGTAACCACTGCCAATAGGCTGTTTCTATGCTTATTTCCTATTTTGAT 2824
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 2825 TTTTACTTTGAAGATAGGAATATCTAAATTATATCTCTAGGGAGAAAATGTTGTAAAAAATTAAAAGTACATCC 2898
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 2899 CTGATTGTAAAATAAAGTTCAAAAAACTGATTTCAGAAAGTCTCAACTACCAAATGTTTTCAATATATTAGTTT 2972
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 2973 TGAGATGCTAGGATTATACTGTGATTCTTATGTTTATAGTAAAGTCTGGAAAGCAGAAGGATAGTTTTTTTAGC 3046
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 3047 CTGGAAACTTATTTATGTTGCCTTGGTGAGTCTTCTATCATTTTTTAAAAATTTAGCTTATTGAACTGTAAAAT 3120
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 3121 AGCTTTTCTAGTATGAGAGATGTTTTGAATTTAAAAAATGAAATGCAGTTTTTCAAAAATAAATTTCCTTTGGA 3194
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 3195 AATTCTTGCATATCAATTTAGTAAGGTTTTATAAAATTTTACAATTTGATAAAGTATCACATCTAGAATTCACT 3268
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 3269 GTCTTCTTTTATCTGCTCTCAAGTTGGCATTGCATCACTGCCTGTGTCTTACACTGCACCAAATGTTACCTAAT 3342
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 3343 TGACCTAACTTTTTTTGTCTAATATCTTTCATTAAAAACAATTGGATTATTTAACCAGAAAAAAAATCTGGTAA 3416
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 3417 TAGAGATGTTGCTATCCTAGAATACTCTCTTGACAGTCTGTATGCCATGAAAACTTGCATAAGAAGGCAGCTGA 3490
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 3491 TTACGAAAAATTAATCATCATTGAATTTAGTATTACTAAACTCATAGCATTTGTCCAGATTTGTAAACACTATT 3564
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 3565 GATTCTAATGTGAAAGATGGAAAAGCAGTCCCAGAATTGGCTTAGCACAGAGACTCTAAATGATAGTAAAACAA 3638
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 3639 CATATTCAACTTTAATTCCTGTCTTATTGTTAATGGGAAGTTAGTTATGGTTCTACTTAAATGTTGTAGAGAAA 3712
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 3713 ATAAGTATTACTAGTTTCTTCTCATAAAAATACTCCCTGGATACGTACACTGAACAACACAAAAAACGTAATGG 3786
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 3787 CCACTTAAGAATATTTATTTATTTATTTATTTTTTTGAGACAGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCA 3860
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 3861 GTGGCACGATCTCAGCTCACCACATCCTCCGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTA 3934
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 3935 GCTGGGATTACAGGTGCCCGCCACCACGCATGGCTAATTTTTGTATTTTTAGTAGAGGCGAGGTTTCACCATGT 4008
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 4009 TGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCCATCTTGGCCTCCCAAAGTGCTGGGATTATAG 4082
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 4083 GTGTGAGCCACCACGCCCAGCCAAGAATATTTACTAAAGGAAGCTTTGACCCCTGCATCACATTTTTTTCATAT 4156
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 4157 TTCCCTTTCTGTAATCTCAGCACTTTGGGAGGCTGAGGTGGGTAGGTCAAGAGGTCAGGAGTTCGAGACCAGCC 4230
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 4231 TGACCAACATGGCAAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGTGCGTGACTGTAAT 4304
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 4305 CCCAGCTACTTAGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCTGAGATAG 4378
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 4379 TGCCACTGCACTCCAGTCTGGAAAACAGAGTGAGACTCTGTCTCAAAAAAAAAGGTATTGATGAATAAAAATTA 4452
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 4453 TAACTAGAATAAGTACTCTAACAATTCAGATTTATAATTGAGTTGTCTGAAAGCTACCTTTTTCATTGTGAAAG 4526
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 4527 TGCATATTAATGTGAAGAAAATATTCCTATTTGAGAACTTCAAATATGCATACACAAAGATGTTCCAGCTATTT 4600
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 4601 TTATCTTCTTAAGTATGCATTCTACATGAGAACGTTTGGGTTGGTAGTAAAATAAATAGTAATATCAAAATAGT 4674
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 4675 TTATTATGTTTAAATTTCATTCTTTTGGAATACATAATTTTGAGTGATCATGTCTCCAACTACAGTTATTCAGG 4748
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 4749 CACAAATTTTGGAGGTACAAAGAATAAATAATATTCTTAAGGTAGTTTTTCCTTTTATCAGGGTTCTTCTAGAG 4822
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 4823 TACTGGTCTCATTATTTTCTAAAGCAGTTTTTCTAAGGTGATAAACCGAACACATTACTTGCTATGTATTAAAT 4896
Query 1213 --------------------------------------------- 1212
Sbjct 4897 GACTTGTACCACTAAATAATCAAATTCTAAGCTCTAACAGCTTAA 4941
