Nucleotide Global Alignment

Description

Query:
ccsbBroad304_04145
Subject:
NM_001326297.2
Aligned Length:
2144
Identities:
803
Gaps:
1264

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGTGATGGTGGCCAACAAGAAAAGTCAGGACCAAATGACAGAGGATCTGTCCCTGTTTCTAGGGAACAACAC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AATTCGATTCACCGTATGGCTTCATGGTGTATTAGATAAACTTCGCTCTGTTACAACTGAACCCTCTAGTCTGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AGTCTTCTGATACCAACATCTTTGATAGTAACGTGCCTTCAAACAAGAGCAATTTCAGTCGGGGAGATGAGAGG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AGGCATGAAGCTGCAGTGCCACCACTTGCCATTCCTAGCGCGAGACCTGAAAAAAGAGATTCCAGAGTTTCTAC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AAGTTCGCAGGAGTCAAAAACCACAAATGTCAGACAGACTTACGATGATGGAGCTGCAACCCGACTAATGTCAA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CAGTGAAACCTTTGAGGGAGCCAGCACCCTCTGAAGATGTGATTGATATTAAGCCAGAACCAGATGATCTCATT  444

Query    1  ------------------------------------------------------ATGAGA-------ATG--TC  11
                                                                  .|||.|       |||  ||
Sbjct  445  GACGAAGACCTCAACTTTGTGCAGGAGAATCCCTTATCTCAGAAAAAACCTACAGTGACACTTACATATGGTTC  518

Query   12  TTC--------------AAAGTTTCCATC-ACCACCT----CTACCAAT-----------TTTTC---------  46
            |||              |||.||   ||| |||||||    .||..|||           |.|||         
Sbjct  519  TTCTCGCCCTTCTATTGAAATTT---ATCGACCACCTGCAAGTAGAAATGCAGATAGTGGTGTTCATTTAAACA  589

Query   47  ---------TTCCACCGGAGC-----------------------------------CAGTGGACTTAGGTTCCA  76
                     |||.||.|.|||                                   |||.|.|.||.|||   |
Sbjct  590  GGTTGCAATTTCAACAGCAGCAGAATAGTATTCATGCTGCCAAGCAGCTTGATATGCAGAGTAGTTGGGT---A  660

Query   77  T----AACA-------------------AGCTCCT------CTT------------------GTTC--------  95
            |    ||||                   ||.|.||      |||                  ||||        
Sbjct  661  TATGAAACAGGACGTTTGTGTGAACCAGAGGTGCTTAACAGCTTAGAAGAAACGTATAGTCCGTTCTTTAGAAA  734

Query   96  --ACT------GAATGAG---------------CT------AGACAATATTTCC-----------CACCTTTTA  129
              |||      .||||||               ||      |||.||..||.||           ||..|.|||
Sbjct  735  CAACTCGGAGAAAATGAGTATGGAGGATGAAAACTTTCGGAAGAGAAAGTTGCCTGTGGTAAGTTCAGTTGTTA  808

Query  130  AGG----AAAAT---ATCAGCTGAT----------ATCAATGAA-------ATTAAAGG------AATGAAAGC  173
            |.|    |||||   ||||  ||||          |..|| |||       ||||..||      |..|.||||
Sbjct  809  AAGTAAAAAAATTCAATCA--TGATGGAGAAGAGGAGGAA-GAAGATGATGATTACGGGTCTCGAACAGGAAGC  879

Query  174  AGCT-----ATTTTGACAGTGGAAGCAAA----------------TCTTTTTGA---TCTAAATGTTAGAGTGT  223
            |.||     |.|.||.|.|||...|||||                |||.||..|   ||||||           
Sbjct  880  ATCTCCAGCAGTGTGTCTGTGCCTGCAAAGCCTGAAAGGAGACCTTCTCTTCCACCTTCTAAA-----------  942

Query  224  CCAAG--AATGAAGCAAAAATTTCATCTTTGGAGGTTA-AAATGAA--TGAATATT------CAACAACATATG  286
             ||||  ||     |||.|||.|.|| ||||.|||.|| |..||||  |.||.|.|      |||.||||..|.
Sbjct  943  -CAAGCTAA-----CAAGAATCTGAT-TTTGAAGGCTATATCTGAAGCTCAAGAATCCGTAACAAAAACAACTA  1009

Query  287  AAT----------------GCAACAGACAGTTTGA---------AGA-----------TCAAGAAGAA--GATA  322
            |.|                |.||||||||.||..|         |||           ||||||||||  |.||
Sbjct 1010  ACTACTCTACAGTTCCACAGAAACAGACACTTCCAGTTGCTCCCAGAACTCGAACTTCTCAAGAAGAATTGCTA  1083

Query  323  --------------------------------CTGAAT-------CACAGTCAAGAACTACTGATGTAAAAATA  357
                                            |.||||       |.||.|.|||||     || |.|||.|.|
Sbjct 1084  GCAGAAGTGGTCCAGGGACAAAGTAGGACCCCCAGAATAAGTCCCCCCATTAAAGAA-----GA-GGAAACAAA  1151

Query  358  ATCGGCTTCCTTAGAAACGTTGAGA---AAGGAACTCAACAGAGGCAATTATTATCCCGACTGCAAATCGACCC  428
            |...|.|||..||||||     |.|   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152  AGGAGATTCTGTAGAAA-----AAAATCAAGGAACTCAACAGAGGCAATTATTATCCCGACTGCAAATCGACCC  1220

Query  429  AGTAATGGCAGAAACTCTGCAGATGAGTCAA-------------------------------------------  459
            |||||||||||||||||||||||||||||||                                           
Sbjct 1221  AGTAATGGCAGAAACTCTGCAGATGAGTCAAGATTACTATGACATGGAATCCATGGTCCATGCAGACACAAGAT  1294

Query  460  --------------------------------------------------------------------------  459
                                                                                      
Sbjct 1295  CATTTATTCTGAAGAAGCCAAAGCTGTCTGAGGAAGTAGTAGTGGCACCAAACCAAGAGTCGGGGATGAAGACT  1368

Query  460  --------------------------------------------------------------------------  459
                                                                                      
Sbjct 1369  GCAGATTCCCTTCGGGTACTTTCAGGACACCTTATGCAGACACGAGATCTTGTACAACCAGATAAACCTGCAAG  1442

Query  460  --------------------------------------------------------------------------  459
                                                                                      
Sbjct 1443  TCCCAAGTTTATAGTGACGCTGGATGGTGTCCCCAGCCCCCCAGGATACATGTCAGATCAAGAGGAGGACATGT  1516

Query  460  --------------------------------------------------------------------------  459
                                                                                      
Sbjct 1517  GCTTTGAAGGAATGAAACCCGTAAACCAAACTGCAGCCTCAAACAAGGGACTCAGAGGTCTCCTCCACCCACAG  1590

Query  460  ------------------------------------------------------GCTGAGATGAGTGAACTGAG  479
                                                                  ||||||||||||||||||||
Sbjct 1591  CAGTTGCACTTGCTGAGCAGGCAGCTTGAGGACCCAAATGGTAGCTTTTCTAACGCTGAGATGAGTGAACTGAG  1664

Query  480  TGTGGCACAGAAACCAGAAAAACTTTTGGAGCGCTGCAAGTACTGGCCTGCTTGTAAAAATGGGGATGAGTGTG  553
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665  TGTGGCACAGAAACCAGAAAAACTTTTGGAGCGCTGCAAGTACTGGCCTGCTTGTAAAAATGGGGATGAGTGTG  1738

Query  554  CCTACCATCACCCCATCTCACCCTGCAAAGCCTTCCCCAATTGTAAATTTGCTGAAAAATGTTTGTTTGTTCAC  627
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739  CCTACCATCACCCCATCTCACCCTGCAAAGCCTTCCCCAATTGTAAATTTGCTGAAAAATGTTTGTTTGTTCAC  1812

Query  628  CCAAATTGTAAATATGATGCAAAGTGTACTAAACCAGATTGTCCCTTCACTCATGTGAGTAGAAGAATTCCAGT  701
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1813  CCAAATTGTAAATATGATGCAAAGTGTACTAAACCAGATTGTCCCTTCACTCATGTGAGTAGAAGAATTCCAGT  1886

Query  702  ACTGTCTCCAAAAC---CAGTTGCACCACCAGCACCACCTTCCAGTAGTCAGCTCTGCCGTTACTTCCCTGCTT  772
            ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1887  ACTGTCTCCAAAACCAGCAGTTGCACCACCAGCACCACCTTCCAGTAGTCAGCTCTGCCGTTACTTCCCTGCTT  1960

Query  773  GTAAGAAGATGGAATGTCCCTTCTATCATCCAAAACATTGTAGGTTTAACACTCAATGTACAAGACCGGACTGC  846
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1961  GTAAGAAGATGGAATGTCCCTTCTATCATCCAAAACATTGTAGGTTTAACACTCAATGTACAAGACCGGACTGC  2034

Query  847  ACATTCTACCATCCCACCATTAATGTCCCACCACGACATGCCTTGAAATGGATTCGACCTCAAACCAGCGAA  918
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2035  ACATTCTACCATCCCACCATTAATGTCCCACCACGACATGCCTTGAAATGGATTCGACCTCAAACCAGCGAA  2106

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