Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_04145
- Subject:
- NM_001326303.2
- Aligned Length:
- 1658
- Identities:
- 800
- Gaps:
- 763
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGTGATGGTGGCCAACAAGAAAAGTCAGGACCAAATGACAGAGGATCTGTCCCTGTTTCTAGGGAACAACAC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AATTCGATTCACCGTATGGCTTCATGGTGTATTAGATAAACTTCGCTCTGTTACAACTGAACCCTCTAGTCTGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGTCTTCTGATACCAACATCTTTGATAGTAACGTGCCTTCAAACAAGAGCAATTTCAGTCGGGGAGATGAGAGG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGGCATGAAGCTGCAGTGCCACCACTTGCCATTCCTAGCGCGAGACCTGAAAAAAGAGATTCCAGAGTTTCTAC 296
Query 1 --------ATGAG------------AATGTC-TTCAAAGTTTCCATCA--------CCACCTCTACCAATTTTT 45
|.||| |||||| ..||.|.||.|.||.| |.||| |.||.|||.|
Sbjct 297 AAGTTCGCAGGAGTCAAAAACCACAAATGTCAGACAGACTTACGATGATGGAGCTGCAACC-CGACTAATGT-- 367
Query 46 CTTCCACC---------------GGAGCCAG-------TG-------GACTTAGGTT---CCATAACAAGCTCC 87
||.| |||||||| || ||.|.|..|| |||.|||.||.|..
Sbjct 368 ----CAACAGTGAAACCTTTGAGGGAGCCAGCACCCTCTGAAGATGTGATTGATATTAAGCCAGAACCAGATGA 437
Query 88 TCTTGTTCAC----------------TGAATGAG----------------------CTA----GACA-----AT 114
|||..||.|| ||.|.||| ||| |||| ||
Sbjct 438 TCTCATTGACGAAGACCTCAACTTTGTGCAGGAGAATCCCTTATCTCAGAAAAAACCTACAGTGACACTTACAT 511
Query 115 AT--TTC----CCACCTTTTAAGGAAAAT-----ATCAGCTGATATCAA--TGAAA------------------ 157
|| ||| |..||||.||..||||.| |.||.||| ||| .||||
Sbjct 512 ATGGTTCTTCTCGCCCTTCTATTGAAATTTATCGACCACCTG----CAAGTAGAAATGCAGATAGTGGTGTTCA 581
Query 158 -TTAAA------GGAAT---GAAAGCAGC-------TATT----------------TTGA----CAGTG----- 189
||||| |.||| .|.|||||| |||| |||| |||.|
Sbjct 582 TTTAAACAGGTTGCAATTTCAACAGCAGCAGAATAGTATTCATGCTGCCAAGCAGCTTGATATGCAGAGTAGTT 655
Query 190 --------GAAGCAAATCTTTT---TGATCTAAATG-----------TTAGA------GT---GTCC------- 225
|||.||...|.||| |||.|.|.|.| ||||| || ||||
Sbjct 656 GGGTATATGAAACAGGACGTTTGTGTGAACCAGAGGTGCTTAACAGCTTAGAAGAAACGTATAGTCCGTTCTTT 729
Query 226 ---------------AAGAATGA---------AGCAAAAATTTC-------------ATCTTTGG--AG----- 255
|| ||||| |..||||.|||| ..||.||| ||
Sbjct 730 AGAAACAACTCGGAGAA-AATGAGTATGGAGGATGAAAACTTTCGGAAGAGAAAGTTGCCTGTGGTAAGTTCAG 802
Query 256 --GTTAAAATGAATGAATATTCAA-CAACAT----------------------ATGAATGC--------AACAG 296
||||||.|.|| ||.|||||| ||..|| ||||.|.| |||||
Sbjct 803 TTGTTAAAGTAAA--AAAATTCAATCATGATGGAGAAGAGGAGGAAGAAGATGATGATTACGGGTCTCGAACAG 874
Query 297 ------------ACAGTTTG------------AAG--------------------------------------- 307
.||||.|| |||
Sbjct 875 GAAGCATCTCCAGCAGTGTGTCTGTGCCTGCAAAGCCTGAAAGGAGACCTTCTCTTCCACCTTCTAAACAAGCT 948
Query 308 ATCAAGAA---------GAAG---ATA-CTGAATCACA-------GT--CAAGAACTACTGATGTAAAAATAAT 359
|.|||||| |||| ||| |||||.|.|| || |||.|||.||| ||.||.|
Sbjct 949 AACAAGAATCTGATTTTGAAGGCTATATCTGAAGCTCAAGAATCCGTAACAAAAACAACT-------AACTACT 1015
Query 360 CGGC--TTCCTTAGAAAC-----------GTTG-----AGAA-AGGAA---CTCAA-------------CAGAG 398
|..| ||||..|||||| |||| |||| ..||| ||||| ||||.
Sbjct 1016 CTACAGTTCCACAGAAACAGACACTTCCAGTTGCTCCCAGAACTCGAACTTCTCAAGAAGAATTGCTAGCAGAA 1089
Query 399 G------------CAATTATTATCCC--GACTGCAAATCGACCCAGTAATG--GCAGAAAC----------TCT 446
| .||.||..|.||| ||.| ||.||..||||.|||.| |..||||| |||
Sbjct 1090 GTGGTCCAGGGACAAAGTAGGACCCCCAGAAT--AAGTCCCCCCATTAAAGAAGAGGAAACAAAAGGAGATTCT 1161
Query 447 GCAG--ATGAGTCAAGCTGAGATGAGTGAACTGAGTGTGGCACAGAAACCAGAAAAACTTTTGGAGCGCTGCAA 518
|.|| |..|.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 GTAGAAAAAAATCAAGCTGAGATGAGTGAACTGAGTGTGGCACAGAAACCAGAAAAACTTTTGGAGCGCTGCAA 1235
Query 519 GTACTGGCCTGCTTGTAAAAATGGGGATGAGTGTGCCTACCATCACCCCATCTCACCCTGCAAAGCCTTCCCCA 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1236 GTACTGGCCTGCTTGTAAAAATGGGGATGAGTGTGCCTACCATCACCCCATCTCACCCTGCAAAGCCTTCCCCA 1309
Query 593 ATTGTAAATTTGCTGAAAAATGTTTGTTTGTTCACCCAAATTGTAAATATGATGCAAAGTGTACTAAACCAGAT 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 ATTGTAAATTTGCTGAAAAATGTTTGTTTGTTCACCCAAATTGTAAATATGATGCAAAGTGTACTAAACCAGAT 1383
Query 667 TGTCCCTTCACTCATGTGAGTAGAAGAATTCCAGTACTGTCTCCAAAACCAGTTGCACCACCAGCACCACCTTC 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1384 TGTCCCTTCACTCATGTGAGTAGAAGAATTCCAGTACTGTCTCCAAAACCAGTTGCACCACCAGCACCACCTTC 1457
Query 741 CAGTAGTCAGCTCTGCCGTTACTTCCCTGCTTGTAAGAAGATGGAATGTCCCTTCTATCATCCAAAACATTGTA 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1458 CAGTAGTCAGCTCTGCCGTTACTTCCCTGCTTGTAAGAAGATGGAATGTCCCTTCTATCATCCAAAACATTGTA 1531
Query 815 GGTTTAACACTCAATGTACAAGACCGGACTGCACATTCTACCATCCCACCATTAATGTCCCACCACGACATGCC 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1532 GGTTTAACACTCAATGTACAAGACCGGACTGCACATTCTACCATCCCACCATTAATGTCCCACCACGACATGCC 1605
Query 889 TTGAAATGGATTCGACCTCAAACCAGCGAA 918
||||||||||||||||||||||||||||||
Sbjct 1606 TTGAAATGGATTCGACCTCAAACCAGCGAA 1635
