Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_04145
- Subject:
- NM_001326311.2
- Aligned Length:
- 1334
- Identities:
- 776
- Gaps:
- 478
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGTCAACAGTGAAACCTTTGAGGGAGCCAGCACCCTCTGAAGATGTGATTGATATTAAGCCAGAACCAGATGA 74
Query 1 -----------------------------ATGAGAATGTCTT---------------CAAAGT-----TTCCA- 24
|.||||||..||| .|.||| ||.||
Sbjct 75 TCTCATTGACGAAGACCTCAACTTTGTGCAGGAGAATCCCTTATCTCAGAAAAAACCTACAGTGACACTTACAT 148
Query 25 ----------TCACCACCTCTA--CCAATTTTTCTTCCACC-------------GGAGCCAGTGGACTTAGGTT 73
||.|| |.|||| ..|||||.||..||||| |.||..|||||..||
Sbjct 149 ATGGTTCTTCTCGCC-CTTCTATTGAAATTTATCGACCACCTGCAAGTAGAAATGCAGATAGTGGTGTT----- 216
Query 74 CCAT---AACAAGCTCCTCTTG----TTCA-------CTGAATGAGCTAGACAATATT-----TCCCACCTTTT 128
||| ||||.| ||| |||| |.|||| |.|||| |.|||
Sbjct 217 -CATTTAAACAGG------TTGCAATTTCAACAGCAGCAGAAT---------AGTATTCATGCTGCCA------ 268
Query 129 AAGGAAAATATCAGC-TGATAT-CA--------------ATGAAATTAAAGGA-------ATGAA----AGCAG 175
|.|||| |||||| || ||||| |.|||| .|||| ||..|
Sbjct 269 ---------AGCAGCTTGATATGCAGAGTAGTTGGGTATATGAA---ACAGGACGTTTGTGTGAACCAGAGGTG 330
Query 176 CTATTTTGACAG--TGGAAGCAAA------------TCTTTTTGA------TC----TAAATG---TTAGAG-- 220
| ||.|||| |.|||| ||| || |||.|| || .||||| .|.|||
Sbjct 331 C----TTAACAGCTTAGAAG-AAACGTATAGTCCGTTC-TTTAGAAACAACTCGGAGAAAATGAGTATGGAGGA 398
Query 221 TGTCCAAGAAT----GAAGCAAAAATTTCATCTTTGG--AG-------GTTAAAATGAATGAATATTCAA-CAA 280
|| ||.|.| ||||..|||.||.| ||.||| || ||||||.|.|| ||.|||||| ||.
Sbjct 399 TG---AAAACTTTCGGAAGAGAAAGTTGC--CTGTGGTAAGTTCAGTTGTTAAAGTAAA--AAAATTCAATCAT 465
Query 281 CAT----------------------ATGAATGC--------AACAG------------ACAGTTTG-------- 304
.|| ||||.|.| ||||| .||||.||
Sbjct 466 GATGGAGAAGAGGAGGAAGAAGATGATGATTACGGGTCTCGAACAGGAAGCATCTCCAGCAGTGTGTCTGTGCC 539
Query 305 ----AAG---------------------------------------ATCAAGAA---------GAAG---ATA- 322
||| |.|||||| |||| |||
Sbjct 540 TGCAAAGCCTGAAAGGAGACCTTCTCTTCCACCTTCTAAACAAGCTAACAAGAATCTGATTTTGAAGGCTATAT 613
Query 323 CTGAATCACA-------GT--CAAGAACTACTGATGTAAAAATAATCGGC--TTCCTTAGAAAC---------- 375
|||||.|.|| || |||.|||.||| ||.||.||..| ||||..||||||
Sbjct 614 CTGAAGCTCAAGAATCCGTAACAAAAACAACT-------AACTACTCTACAGTTCCACAGAAACAGACACTTCC 680
Query 376 -GTTG-----AGAA-AGGAA---CTCAA-------------CAGAGG------------CAATTATTATCCC-- 412
|||| |||| ..||| ||||| ||||.| .||.||..|.|||
Sbjct 681 AGTTGCTCCCAGAACTCGAACTTCTCAAGAAGAATTGCTAGCAGAAGTGGTCCAGGGACAAAGTAGGACCCCCA 754
Query 413 GACTGCAAATCGACCCAGTAATG--GCAGAAAC----------TCTGCAG--ATGAGTCAAGCTGAGATGAGTG 472
||.| ||.||..||||.|||.| |..||||| ||||.|| |..|.|||||||||||||||||
Sbjct 755 GAAT--AAGTCCCCCCATTAAAGAAGAGGAAACAAAAGGAGATTCTGTAGAAAAAAATCAAGCTGAGATGAGTG 826
Query 473 AACTGAGTGTGGCACAGAAACCAGAAAAACTTTTGGAGCGCTGCAAGTACTGGCCTGCTTGTAAAAATGGGGAT 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 AACTGAGTGTGGCACAGAAACCAGAAAAACTTTTGGAGCGCTGCAAGTACTGGCCTGCTTGTAAAAATGGGGAT 900
Query 547 GAGTGTGCCTACCATCACCCCATCTCACCCTGCAAAGCCTTCCCCAATTGTAAATTTGCTGAAAAATGTTTGTT 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GAGTGTGCCTACCATCACCCCATCTCACCCTGCAAAGCCTTCCCCAATTGTAAATTTGCTGAAAAATGTTTGTT 974
Query 621 TGTTCACCCAAATTGTAAATATGATGCAAAGTGTACTAAACCAGATTGTCCCTTCACTCATGTGAGTAGAAGAA 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 TGTTCACCCAAATTGTAAATATGATGCAAAGTGTACTAAACCAGATTGTCCCTTCACTCATGTGAGTAGAAGAA 1048
Query 695 TTCCAGTACTGTCTCCAAAACCAGTTGCACCACCAGCACCACCTTCCAGTAGTCAGCTCTGCCGTTACTTCCCT 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1049 TTCCAGTACTGTCTCCAAAACCAGTTGCACCACCAGCACCACCTTCCAGTAGTCAGCTCTGCCGTTACTTCCCT 1122
Query 769 GCTTGTAAGAAGATGGAATGTCCCTTCTATCATCCAAAACATTGTAGGTTTAACACTCAATGTACAAGACCGGA 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1123 GCTTGTAAGAAGATGGAATGTCCCTTCTATCATCCAAAACATTGTAGGTTTAACACTCAATGTACAAGACCGGA 1196
Query 843 CTGCACATTCTACCATCCCACCATTAATGTCCCACCACGACATGCCTTGAAATGGATTCGACCTCAAACCAGCG 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 CTGCACATTCTACCATCCCACCATTAATGTCCCACCACGACATGCCTTGAAATGGATTCGACCTCAAACCAGCG 1270
Query 917 AA 918
||
Sbjct 1271 AA 1272