Nucleotide Global Alignment

Description

Query:
ccsbBroad304_04145
Subject:
NM_001326313.2
Aligned Length:
1619
Identities:
800
Gaps:
736

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGAGATCGGCACCGAGATCAGCCGCAAGATCCGGAGTGCCATTAAGGGGAAATTACAAGAATTAGGAGCTTA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGTTGATGAAGAACTTCCTGATTACATTATGGTGATGGTGGCCAACAAGAAAAGTCAGGACCAAATGACAGAGG  148

Query    1  -----------------------------ATGAGA--------ATGTCTTC--------------AAAGTT---  20
                                         ||..||        |||.||||              |||.||   
Sbjct  149  ATCTGTCCCTGTTTCTAGGGAACAACACAATTCGATTCACCGTATGGCTTCATGGTGTATTAGATAAACTTCGC  222

Query   21  TCCATCACCA------CCTC------------------TACCA--ATTTTT-------------CTTC-CACCG  54
            ||..|.||.|      ||||                  |||||  ||.|||             |||| .||..
Sbjct  223  TCTGTTACAACTGAACCCTCTAGTCTGAAGTCTTCTGATACCAACATCTTTGATAGTAACGTGCCTTCAAACAA  296

Query   55  GAGC-----CAGT---GGACTT---AGGTTCCATAACAAGCT---------CCTCTTG---TTC----------  95
            ||||     ||||   |||..|   |||...|||  .|||||         ||.||||   |||          
Sbjct  297  GAGCAATTTCAGTCGGGGAGATGAGAGGAGGCAT--GAAGCTGCAGTGCCACCACTTGCCATTCCTAGCGCGAG  368

Query   96  -ACTGAATGAGCTAGACAATATTTCC----------CACCTTTTAAGGA------------AAATATCAG----  142
             .|||||..|   |||.|    ||||          ||..||...||||            ||||.||||    
Sbjct  369  ACCTGAAAAA---AGAGA----TTCCAGAGTTTCTACAAGTTCGCAGGAGTCAAAAACCACAAATGTCAGACAG  435

Query  143  ---------------------------CTGATATCAA---TGAAA---TTAAAGGAATGAAAGCA---------  174
                                       ||.||.||||   |||||   ||.|.|||  |..||||         
Sbjct  436  ACTTACGATGATGGAGCTGCAACCCGACTAATGTCAACAGTGAAACCTTTGAGGGA--GCCAGCACCCTCTGAA  507

Query  175  ---------GCTATT----------------------TTGACAGTGGAAG----CAAATCTTTTTG--------  205
                     |.||||                      |||||    ||||    |||  ||||.||        
Sbjct  508  GATGTGATTGATATTAAGCCAGAACCAGATGATCTCATTGAC----GAAGACCTCAA--CTTTGTGCAGGAGAA  575

Query  206  ------ATCT-----AAATGTTAGAGTG-----TCCA-----------------------AGAA----------  230
                  ||||     |||...||.||||     |.||                       .|||          
Sbjct  576  TCCCTTATCTCAGAAAAAACCTACAGTGACACTTACATATGGTTCTTCTCGCCCTTCTATTGAAATTTATCGAC  649

Query  231  ----TG-AAGCAAAAAT-------------TTCATCTTTGGAGGTTAAAAT-------------GAATGAATAT  273
                || |||.|.||||             |||||.|....|||||..|||             |||| |.|||
Sbjct  650  CACCTGCAAGTAGAAATGCAGATAGTGGTGTTCATTTAAACAGGTTGCAATTTCAACAGCAGCAGAAT-AGTAT  722

Query  274  TCA-----ACAA-------CATATG---------------AATGCAACA-GACAGTTTG-AAGATCAAGA----  314
            |||     .|||       .|||||               .|||.|||| ||| ||||| ..||.|.|||    
Sbjct  723  TCATGCTGCCAAGCAGCTTGATATGCAGAGTAGTTGGGTATATGAAACAGGAC-GTTTGTGTGAACCAGAGGTG  795

Query  315  -----------AGAAGATACTGAATCACAGTC-----------AAGAACT-------ACTGATGTA--------  351
                       ||||||.|| |.||   ||||           ||.||||       |.||| |||        
Sbjct  796  CTTAACAGCTTAGAAGAAAC-GTAT---AGTCCGTTCTTTAGAAACAACTCGGAGAAAATGA-GTATGGAGGAT  864

Query  352  -AAAATAATCG---------GCTTCCT-TAGAAACGTTGAG----------AAAGGAACTCAA-CA--------  395
             ||||...|||         |.|.||| |.|.|| |||.||          |||..||.|||| ||        
Sbjct  865  GAAAACTTTCGGAAGAGAAAGTTGCCTGTGGTAA-GTTCAGTTGTTAAAGTAAAAAAATTCAATCATGATGGAG  937

Query  396  -----GAGGCA-------ATTATTA----TCCCGA-------------------------------CTGCAAAT  422
                 ||||.|       ||.||||    ||.|||                               |||||||.
Sbjct  938  AAGAGGAGGAAGAAGATGATGATTACGGGTCTCGAACAGGAAGCATCTCCAGCAGTGTGTCTGTGCCTGCAAAG  1011

Query  423  C---------GACC---------------------------CAGTAAT-----------GGC------------  437
            |         ||||                           ||..|||           |||            
Sbjct 1012  CCTGAAAGGAGACCTTCTCTTCCACCTTCTAAACAAGCTAACAAGAATCTGATTTTGAAGGCTATATCTGAAGC  1085

Query  438  ---AGAA----------------------ACTCTGCAGATGAGTCAAGCTGAGATGAGTGAACTGAGTGTGGCA  486
               ||||                      |||||.|          ||||||||||||||||||||||||||||
Sbjct 1086  TCAAGAATCCGTAACAAAAACAACTAACTACTCTAC----------AGCTGAGATGAGTGAACTGAGTGTGGCA  1149

Query  487  CAGAAACCAGAAAAACTTTTGGAGCGCTGCAAGTACTGGCCTGCTTGTAAAAATGGGGATGAGTGTGCCTACCA  560
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150  CAGAAACCAGAAAAACTTTTGGAGCGCTGCAAGTACTGGCCTGCTTGTAAAAATGGGGATGAGTGTGCCTACCA  1223

Query  561  TCACCCCATCTCACCCTGCAAAGCCTTCCCCAATTGTAAATTTGCTGAAAAATGTTTGTTTGTTCACCCAAATT  634
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1224  TCACCCCATCTCACCCTGCAAAGCCTTCCCCAATTGTAAATTTGCTGAAAAATGTTTGTTTGTTCACCCAAATT  1297

Query  635  GTAAATATGATGCAAAGTGTACTAAACCAGATTGTCCCTTCACTCATGTGAGTAGAAGAATTCCAGTACTGTCT  708
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1298  GTAAATATGATGCAAAGTGTACTAAACCAGATTGTCCCTTCACTCATGTGAGTAGAAGAATTCCAGTACTGTCT  1371

Query  709  CCAAAAC---CAGTTGCACCACCAGCACCACCTTCCAGTAGTCAGCTCTGCCGTTACTTCCCTGCTTGTAAGAA  779
            |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372  CCAAAACCAGCAGTTGCACCACCAGCACCACCTTCCAGTAGTCAGCTCTGCCGTTACTTCCCTGCTTGTAAGAA  1445

Query  780  GATGGAATGTCCCTTCTATCATCCAAAACATTGTAGGTTTAACACTCAATGTACAAGACCGGACTGCACATTCT  853
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1446  GATGGAATGTCCCTTCTATCATCCAAAACATTGTAGGTTTAACACTCAATGTACAAGACCGGACTGCACATTCT  1519

Query  854  ACCATCCCACCATTAATGTCCCACCACGACATGCCTTGAAATGGATTCGACCTCAAACCAGCGAA  918
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1520  ACCATCCCACCATTAATGTCCCACCACGACATGCCTTGAAATGGATTCGACCTCAAACCAGCGAA  1584

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