Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_04145
- Subject:
- XM_011537161.3
- Aligned Length:
- 2084
- Identities:
- 810
- Gaps:
- 1198
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGAGATCGGCACCGAGATCAGCCGCAAGATCCGGAGTGCCATTAAGGGGAAATTACAAGAATTAGGAGCTTA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGTTGATGAAGAACTTCCTGATTACATTATGGTGATGGTGGCCAACAAGAAAAGTCAGGACCAAATGACAGAGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ATCTGTCCCTGTTTCTAGGGAACAACACAATTCGATTCACCGTATGGCTTCATGGTGTATTAGATAAACTTCGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TCTGTTACAACTGAACCCTCTAGTCTGAAGTCTTCTGATACCAACATCTTTGATAGTAACGTGCCTTCAAACAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GAGCAATTTCAGTCGGGGAGATGAGAGGAGGCATGAAGCTGCAGTGCCACCACTTGCCATTCCTAGCGCGAGAC 370
Query 1 ------------------------------------ATGAG------------AATGTC-TTCAAAGTTTCCAT 25
|.||| |||||| ..||.|.||.|.||
Sbjct 371 CTGAAAAAAGAGATTCCAGAGTTTCTACAAGTTCGCAGGAGTCAAAAACCACAAATGTCAGACAGACTTACGAT 444
Query 26 CA--------CCACCTCTACCAATTTTTCTTCCACC---------------GGAGCCAG-------TG------ 63
.| |.||| |.||.|||.| ||.| |||||||| ||
Sbjct 445 GATGGAGCTGCAACC-CGACTAATGT------CAACAGTGAAACCTTTGAGGGAGCCAGCACCCTCTGAAGATG 511
Query 64 -GACTTAGGTT---CCATAACAAGCTCCTCTTGTTCAC----------------TGAATGAG------------ 105
||.|.|..|| |||.|||.||.|..|||..||.|| ||.|.|||
Sbjct 512 TGATTGATATTAAGCCAGAACCAGATGATCTCATTGACGAAGACCTCAACTTTGTGCAGGAGAATCCCTTATCT 585
Query 106 ----------CTA----GACA-----ATAT--TTC----CCACCTTTTAAGGAAAAT-----ATCAGCTGATAT 149
||| |||| |||| ||| |..||||.||..||||.| |.||.|||
Sbjct 586 CAGAAAAAACCTACAGTGACACTTACATATGGTTCTTCTCGCCCTTCTATTGAAATTTATCGACCACCTG---- 655
Query 150 CAA--TGAAA-------------------TTAAA------GGAAT---GAAAGCAGC-------TATT------ 180
||| .|||| ||||| |.||| .|.|||||| ||||
Sbjct 656 CAAGTAGAAATGCAGATAGTGGTGTTCATTTAAACAGGTTGCAATTTCAACAGCAGCAGAATAGTATTCATGCT 729
Query 181 ----------TTGA----CAGTG-------------GAAGCAAATCTTTT---TGATCTAAATG---------- 214
|||| |||.| |||.||...|.||| |||.|.|.|.|
Sbjct 730 GCCAAGCAGCTTGATATGCAGAGTAGTTGGGTATATGAAACAGGACGTTTGTGTGAACCAGAGGTGCTTAACAG 803
Query 215 -TTAGA------GT---GTCC----------------------AAGAATGA---------AGCAAAAATTTC-- 245
||||| || |||| || ||||| |..||||.||||
Sbjct 804 CTTAGAAGAAACGTATAGTCCGTTCTTTAGAAACAACTCGGAGAA-AATGAGTATGGAGGATGAAAACTTTCGG 876
Query 246 -----------ATCTTTGG--AG-------GTTAAAATGAATGAATATTCAA-CAACAT--------------- 283
..||.||| || ||||||.|.|| ||.|||||| ||..||
Sbjct 877 AAGAGAAAGTTGCCTGTGGTAAGTTCAGTTGTTAAAGTAAA--AAAATTCAATCATGATGGAGAAGAGGAGGAA 948
Query 284 -------ATGAATGC--------AACAG------------ACAGTTTG------------AAG----------- 307
||||.|.| ||||| .||||.|| |||
Sbjct 949 GAAGATGATGATTACGGGTCTCGAACAGGAAGCATCTCCAGCAGTGTGTCTGTGCCTGCAAAGCCTGAAAGGAG 1022
Query 308 ----------------------------ATCAAGAA---------GAAG---ATA-CTGAATCACAGTCAAGAA 340
|.|||||| |||| ||| |||||.| |||||||
Sbjct 1023 ACCTTCTCTTCCACCTTCTAAACAAGCTAACAAGAATCTGATTTTGAAGGCTATATCTGAAGC----TCAAGAA 1092
Query 341 CTACTGATGTAAAAATAATCGGCTTCCTTAGAAACGTTGAGAAAGGAACTCAACAGAGGCAATTATTATCCCGA 414
|.| ||||.|| ||.|..||..|| ||..| |.|||||||||||||||||||||||||||||||
Sbjct 1093 -TCC----GTAACAA-AAACAACTAACT-----ACTCT---ACAGGAACTCAACAGAGGCAATTATTATCCCGA 1152
Query 415 CTGCAAATCGACCCAGTAATGGCAGAAACTCTGCAGATGAGTCAA----------------------------- 459
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 CTGCAAATCGACCCAGTAATGGCAGAAACTCTGCAGATGAGTCAAGATTACTATGACATGGAATCCATGGTCCA 1226
Query 460 -------------------------------------------------------------------------- 459
Sbjct 1227 TGCAGACACAAGATCATTTATTCTGAAGAAGCCAAAGCTGTCTGAGGAAGTAGTAGTGGCACCAAACCAAGAGT 1300
Query 460 -------------------------------------------------------------------------- 459
Sbjct 1301 CGGGGATGAAGACTGCAGATTCCCTTCGGGTACTTTCAGGACACCTTATGCAGACACGAGATCTTGTACAACCA 1374
Query 460 -------------------------------------------------------------------------- 459
Sbjct 1375 GATAAACCTGCAAGTCCCAAGTTTATAGTGACGCTGGATGGTGTCCCCAGCCCCCCAGGATACATGTCAGATCA 1448
Query 460 -------------------------------------------------------------------------- 459
Sbjct 1449 AGAGGAGGACATGTGCTTTGAAGGAATGAAACCCGTAAACCAAACTGCAGCCTCAAACAAGGGACTCAGAGGTC 1522
Query 460 --------------------------------------------------------------------GCTGAG 465
||||||
Sbjct 1523 TCCTCCACCCACAGCAGTTGCACTTGCTGAGCAGGCAGCTTGAGGACCCAAATGGTAGCTTTTCTAACGCTGAG 1596
Query 466 ATGAGTGAACTGAGTGTGGCACAGAAACCAGAAAAACTTTTGGAGCGCTGCAAGTACTGGCCTGCTTGTAAAAA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1597 ATGAGTGAACTGAGTGTGGCACAGAAACCAGAAAAACTTTTGGAGCGCTGCAAGTACTGGCCTGCTTGTAAAAA 1670
Query 540 TGGGGATGAGTGTGCCTACCATCACCCCATCTCACCCTGCAAAGCCTTCCCCAATTGTAAATTTGCTGAAAAAT 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1671 TGGGGATGAGTGTGCCTACCATCACCCCATCTCACCCTGCAAAGCCTTCCCCAATTGTAAATTTGCTGAAAAAT 1744
Query 614 GTTTGTTTGTTCACCCAAATTGTAAATATGATGCAAAGTGTACTAAACCAGATTGTCCCTTCACTCATGTGAGT 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1745 GTTTGTTTGTTCACCCAAATTGTAAATATGATGCAAAGTGTACTAAACCAGATTGTCCCTTCACTCATGTGAGT 1818
Query 688 AGAAGAATTCCAGTACTGTCTCCAAAAC---CAGTTGCACCACCAGCACCACCTTCCAGTAGTCAGCTCTGCCG 758
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1819 AGAAGAATTCCAGTACTGTCTCCAAAACCAGCAGTTGCACCACCAGCACCACCTTCCAGTAGTCAGCTCTGCCG 1892
Query 759 TTACTTCCCTGCTTGTAAGAAGATGGAATGTCCCTTCTATCATCCAAAACATTGTAGGTTTAACACTCAATGTA 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1893 TTACTTCCCTGCTTGTAAGAAGATGGAATGTCCCTTCTATCATCCAAAACATTGTAGGTTTAACACTCAATGTA 1966
Query 833 CAAGACCGGACTGCACATTCTACCATCCCACCATTAATGTCCCACCACGACATGCCTTGAAATGGATTCGACCT 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1967 CAAGACCGGACTGCACATTCTACCATCCCACCATTAATGTCCCACCACGACATGCCTTGAAATGGATTCGACCT 2040
Query 907 CAAACCAGCGAA 918
||||||||||||
Sbjct 2041 CAAACCAGCGAA 2052
