Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_04165
- Subject:
- XR_001747205.1
- Aligned Length:
- 2372
- Identities:
- 1247
- Gaps:
- 1125
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGCACTTCCGGTACGGAAAACTCGCTGCTGCCCCAACCTGGCTTGACAGGCTTGGTCTCTGCAAGTGGCTCTCA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCCCCTTCTTCTTTCCTGCCTCACCTTCCAATTCGTTTGCCGCCGCCGTCCCGCAGCTGCTGTTTCCGGAGTTG 148
Query 1 ---------------------------------------------------------------ATGTCCGAACT 11
|||||||||||
Sbjct 149 CCCCTTCCCCATGTTCCGGGGCAGGAGTCCGCAAAGCGAAGATCCGCCCGCCGGTTCCTCATCATGTCCGAACT 222
Query 12 GACTAAAGAGCTGATGGAGCTGGTGTGGGGCACCAAGAGCAGCCCCGGTCTCTCGGACACCATTTTCTGCCGCT 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GACTAAAGAGCTGATGGAGCTGGTGTGGGGCACCAAGAGCAGCCCCGGTCTCTCGGACACCATTTTCTGCCGCT 296
Query 86 GGACGCAAGGGTTTGTGTTTAGTGAATCAGAGGGATCTGCATTAGAACAGTTTGAAGGTGGCCCCTGTGCTGTT 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GGACGCAAGGGTTTGTGTTTAGTGAATCAGAGGGATCTGCATTAGAACAGTTTGAAGGTGGCCCCTGTGCTGTT 370
Query 160 ATTGCACCTGTTCAGGCATTTCTTTTGAAGAAGCTCCTGTTTTCTTCGGAGAAGTCTTCTTGGCGGGATTGTTC 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 ATTGCACCTGTTCAGGCATTTCTTTTGAAGAAGCTCCTGTTTTCTTCGGAGAAGTCTTCTTGGCGGGATTGTTC 444
Query 234 AGAGGAAGAGCAGAAGGAACTCCTTTGTCATACCTTGTGTGATATTTTAGAAAGTGCTTGTTGTGACCACTCTG 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AGAGGAAGAGCAGAAGGAACTCCTTTGTCATACCTTGTGTGATATTTTAGAAAGTGCTTGTTGTGACCACTCTG 518
Query 308 GATCATACTGCTTGGTTTCATGGTTAAGAGGAAAGACAACTGAGGAAACTGCTAGTATTTCTGGGAGTCCTGCA 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GATCATACTGCTTGGTTTCATGGTTAAGAGGAAAGACAACTGAGGAAACTGCTAGTATTTCTGGGAGTCCTGCA 592
Query 382 GAGTCTAGTTGCCAAGTGGAACATTCTTCTGCCTTGGCTGTCGAAGAGCTTGGCTTTGAGCGATTTCATGCATT 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GAGTCTAGTTGCCAAGTGGAACATTCTTCTGCCTTGGCTGTCGAAGAGCTTGGCTTTGAGCGATTTCATGCATT 666
Query 456 AATTCAAAAAAGATCGTTCAGAAGTTTACCAGAATTAAAAGATGCTGTCTTGGACCAGTATTCAATGTGGGGAA 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AATTCAAAAAAGATCGTTCAGAAGTTTACCAGAATTAAAAGATGCTGTCTTGGACCAGTATTCAATGTGGGGAA 740
Query 530 ATAAATTTGGAGTATTGCTTTTTCTGTATTCTGTATTACTGACAAAGGGCATTGAAAACATAAAAAACGAAATT 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ATAAATTTGGAGTATTGCTTTTTCTGTATTCTGTATTACTGACAAAGGGCATTGAAAACATAAAAAACGAAATT 814
Query 604 GAAGATGCAAGTGAACCCTTGATAGATCCTGTATATGGACATGGCAGCCAAAGTTTAATTAATCTCCTGCTGAC 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GAAGATGCAAGTGAACCCTTGATAGATCCTGTATATGGACATGGCAGCCAAAGTTTAATTAATCTCCTGCTGAC 888
Query 678 GGGACATGCTGTTTCTAATGTATGGGATGGTGATAGAGAGTGCTCAGGAATGAAACTTCTTGGTATACATGAAC 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GGGACATGCTGTTTCTAATGTATGGGATGGTGATAGAGAGTGCTCAGGAATGAAACTTCTTGGTATACATGAAC 962
Query 752 AAGCAGCAGTAGGATTTTTAACACTAATGGAAGCTTTAAGATACTGTAAGGTTGGTTCTTACTTGAAATCTCCA 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AAGCAGCAGTAGGATTTTTAACACTAATGGAAGCTTTAAGATACTGTAAGGTTGGTTCTTACTTGAAATCTCCA 1036
Query 826 AAATTCCCTATTTGGATTGTTGGCAGTGAGACTCACCTCACCGTATTTTTTGCCAAGGATATGGCTTTAGTTGC 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AAATTCCCTATTTGGATTGTTGGCAGTGAGACTCACCTCACCGTATTTTTTGCCAAGGATATGGCTTTAGTTGC 1110
Query 900 CCCTGAAGCTCCTTCAGAACAAGCCAGAAGAGTTTTTCAAACCTACGACCCAGAAGATAATGGATTCATACCCG 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 CCCTGAAGCTCCTTCAGAACAAGCCAGAAGAGTTTTTCAAACCTACGACCCAGAAGATAATGGATTCATACCCG 1184
Query 974 ATTCACTTCTGGAAGATGTGATGAAAGCATTGGACCTTGTTTCAGATCCTGAATATATAAATCTCATGAAGAAT 1047
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 ATTCACTTCTGGAAGATGTGATGAAAGCATTGGACCTTGTTTCAGATCCTGAATA------------------- 1239
Query 1048 AAATTAGATCCAGAAGGATTAGGAATCATATTATTGGGCCCATTTCTTCAAGAATTTTTTCCTGATCAGGGCTC 1121
|||||
Sbjct 1240 ---------------------------------------------------------------------GGCTC 1244
Query 1122 CAGTGGTCCAGAATCTTTTACTGTCTACCACTACAATGGATTGAAGCAGTCAAATTATAATGAAAAGGTCATGT 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1245 CAGTGGTCCAGAATCTTTTACTGTCTACCACTACAATGGATTGAAGCAGTCAAATTATAATGAAAAGGTCATGT 1318
Query 1196 ACGTAGAAGGGACTGCAGTTGTGATGGGTTTTGAAGATCCCATGCTACAGACAGATGACACTCCTATTAAACGC 1269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 ACGTAGAAGGGACTGCAGTTGTGATGGGTTTTGAAGATCCCATGCTACAGACAGATGACACTCCTATTAAACGC 1392
Query 1270 TGTCTGCAAACCAAATGGCCATACATTGAGTTACTCTGGACCACAGATCGCTCTCCTTCACTAAAT-------- 1335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1393 TGTCTGCAAACCAAATGGCCATACATTGAGTTACTCTGGACCACAGATCGCTCTCCTTCACTAAATTAATTTGT 1466
Query 1336 -------------------------------------------------------------------------- 1335
Sbjct 1467 CTAAGTATTTATAAGGAAGATCTTAATAACAGATGTTGAAAGAAGGAGTCAAGACTGGCAATTGGCTGGATTAA 1540
Query 1336 -------------------------------------------------------------------------- 1335
Sbjct 1541 GCTAAACACTGGTATCACTGATTAACTGTAAATAACAATTAAAAACACATTTTCAGTGTTTATGATATGTTTAA 1614
Query 1336 -------------------------------------------------------------------------- 1335
Sbjct 1615 ATTATTTGTCCTAAAGCTTTATGTTAAAGATTATCCTATTTTACCCCTTCGTGTGAAATTTACTAGCAAAATTA 1688
Query 1336 -------------------------------------------------------------------------- 1335
Sbjct 1689 AGCTTTCATCAAAGTTCATCACTTTTGCATTCAGATACTTGGTCATTTACTTACCAAATTACAAACGCAATACT 1762
Query 1336 -------------------------------------------------------------------------- 1335
Sbjct 1763 ACAGCATTTGTATATTAAGTATCACAGTTACTATTGATAAACTACTTTTGGGTTTTATTTCATTGAGGCACTTT 1836
Query 1336 -------------------------------------------------------------------------- 1335
Sbjct 1837 TTTTATTGTTTGAATGATTCCGGCTTGTAATATATCAGCCTCTACAATGAAATGCAGAAGAGTTCATTTTTCTA 1910
Query 1336 -------------------------------------------------------------------------- 1335
Sbjct 1911 AGATCTGTTTTTCATTAGAAATATTGACAAATAACACATTGTCAACCTGGATCCTTTGACAATTTACTTAACTC 1984
Query 1336 -------------------------------------------------------------------------- 1335
Sbjct 1985 TGGCATGTTCACAAAAAGTAGAAACTCTAAGAGACCATTACCATTTATTCACAGATGTATAGGGGATGTATTCT 2058
Query 1336 -------------------------------------------------------------------------- 1335
Sbjct 2059 AAAAACTGACAGAAAAGAGAATCTGATAGTCAACACTGTTAACTTTTACTGTGTAATTGCCAAATACACTTTTC 2132
Query 1336 -------------------------------------------------------------------------- 1335
Sbjct 2133 CAAATTTGTCCCAACAGCCCTGTAAGCCAGCTTTCTTCTATATTTATAAACACGATAAATGCATGAGAAGATCT 2206
Query 1336 -------------------------------------------------------------------------- 1335
Sbjct 2207 GTTATTACATTAGTATATTACGTTATTTATTATGATCCTAGTTGATGGCCTAAATAAACACCTTTTTCTTTAAC 2280
Query 1336 ---- 1335
Sbjct 2281 TGTA 2284
