Nucleotide Global Alignment

Description

Query:
ccsbBroad304_04165
Subject:
XR_001747205.1
Aligned Length:
2372
Identities:
1247
Gaps:
1125

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGCACTTCCGGTACGGAAAACTCGCTGCTGCCCCAACCTGGCTTGACAGGCTTGGTCTCTGCAAGTGGCTCTCA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCCCCTTCTTCTTTCCTGCCTCACCTTCCAATTCGTTTGCCGCCGCCGTCCCGCAGCTGCTGTTTCCGGAGTTG  148

Query    1  ---------------------------------------------------------------ATGTCCGAACT  11
                                                                           |||||||||||
Sbjct  149  CCCCTTCCCCATGTTCCGGGGCAGGAGTCCGCAAAGCGAAGATCCGCCCGCCGGTTCCTCATCATGTCCGAACT  222

Query   12  GACTAAAGAGCTGATGGAGCTGGTGTGGGGCACCAAGAGCAGCCCCGGTCTCTCGGACACCATTTTCTGCCGCT  85
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GACTAAAGAGCTGATGGAGCTGGTGTGGGGCACCAAGAGCAGCCCCGGTCTCTCGGACACCATTTTCTGCCGCT  296

Query   86  GGACGCAAGGGTTTGTGTTTAGTGAATCAGAGGGATCTGCATTAGAACAGTTTGAAGGTGGCCCCTGTGCTGTT  159
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GGACGCAAGGGTTTGTGTTTAGTGAATCAGAGGGATCTGCATTAGAACAGTTTGAAGGTGGCCCCTGTGCTGTT  370

Query  160  ATTGCACCTGTTCAGGCATTTCTTTTGAAGAAGCTCCTGTTTTCTTCGGAGAAGTCTTCTTGGCGGGATTGTTC  233
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  ATTGCACCTGTTCAGGCATTTCTTTTGAAGAAGCTCCTGTTTTCTTCGGAGAAGTCTTCTTGGCGGGATTGTTC  444

Query  234  AGAGGAAGAGCAGAAGGAACTCCTTTGTCATACCTTGTGTGATATTTTAGAAAGTGCTTGTTGTGACCACTCTG  307
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  AGAGGAAGAGCAGAAGGAACTCCTTTGTCATACCTTGTGTGATATTTTAGAAAGTGCTTGTTGTGACCACTCTG  518

Query  308  GATCATACTGCTTGGTTTCATGGTTAAGAGGAAAGACAACTGAGGAAACTGCTAGTATTTCTGGGAGTCCTGCA  381
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GATCATACTGCTTGGTTTCATGGTTAAGAGGAAAGACAACTGAGGAAACTGCTAGTATTTCTGGGAGTCCTGCA  592

Query  382  GAGTCTAGTTGCCAAGTGGAACATTCTTCTGCCTTGGCTGTCGAAGAGCTTGGCTTTGAGCGATTTCATGCATT  455
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GAGTCTAGTTGCCAAGTGGAACATTCTTCTGCCTTGGCTGTCGAAGAGCTTGGCTTTGAGCGATTTCATGCATT  666

Query  456  AATTCAAAAAAGATCGTTCAGAAGTTTACCAGAATTAAAAGATGCTGTCTTGGACCAGTATTCAATGTGGGGAA  529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  AATTCAAAAAAGATCGTTCAGAAGTTTACCAGAATTAAAAGATGCTGTCTTGGACCAGTATTCAATGTGGGGAA  740

Query  530  ATAAATTTGGAGTATTGCTTTTTCTGTATTCTGTATTACTGACAAAGGGCATTGAAAACATAAAAAACGAAATT  603
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  ATAAATTTGGAGTATTGCTTTTTCTGTATTCTGTATTACTGACAAAGGGCATTGAAAACATAAAAAACGAAATT  814

Query  604  GAAGATGCAAGTGAACCCTTGATAGATCCTGTATATGGACATGGCAGCCAAAGTTTAATTAATCTCCTGCTGAC  677
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  GAAGATGCAAGTGAACCCTTGATAGATCCTGTATATGGACATGGCAGCCAAAGTTTAATTAATCTCCTGCTGAC  888

Query  678  GGGACATGCTGTTTCTAATGTATGGGATGGTGATAGAGAGTGCTCAGGAATGAAACTTCTTGGTATACATGAAC  751
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  GGGACATGCTGTTTCTAATGTATGGGATGGTGATAGAGAGTGCTCAGGAATGAAACTTCTTGGTATACATGAAC  962

Query  752  AAGCAGCAGTAGGATTTTTAACACTAATGGAAGCTTTAAGATACTGTAAGGTTGGTTCTTACTTGAAATCTCCA  825
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  AAGCAGCAGTAGGATTTTTAACACTAATGGAAGCTTTAAGATACTGTAAGGTTGGTTCTTACTTGAAATCTCCA  1036

Query  826  AAATTCCCTATTTGGATTGTTGGCAGTGAGACTCACCTCACCGTATTTTTTGCCAAGGATATGGCTTTAGTTGC  899
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  AAATTCCCTATTTGGATTGTTGGCAGTGAGACTCACCTCACCGTATTTTTTGCCAAGGATATGGCTTTAGTTGC  1110

Query  900  CCCTGAAGCTCCTTCAGAACAAGCCAGAAGAGTTTTTCAAACCTACGACCCAGAAGATAATGGATTCATACCCG  973
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  CCCTGAAGCTCCTTCAGAACAAGCCAGAAGAGTTTTTCAAACCTACGACCCAGAAGATAATGGATTCATACCCG  1184

Query  974  ATTCACTTCTGGAAGATGTGATGAAAGCATTGGACCTTGTTTCAGATCCTGAATATATAAATCTCATGAAGAAT  1047
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||                   
Sbjct 1185  ATTCACTTCTGGAAGATGTGATGAAAGCATTGGACCTTGTTTCAGATCCTGAATA-------------------  1239

Query 1048  AAATTAGATCCAGAAGGATTAGGAATCATATTATTGGGCCCATTTCTTCAAGAATTTTTTCCTGATCAGGGCTC  1121
                                                                                 |||||
Sbjct 1240  ---------------------------------------------------------------------GGCTC  1244

Query 1122  CAGTGGTCCAGAATCTTTTACTGTCTACCACTACAATGGATTGAAGCAGTCAAATTATAATGAAAAGGTCATGT  1195
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1245  CAGTGGTCCAGAATCTTTTACTGTCTACCACTACAATGGATTGAAGCAGTCAAATTATAATGAAAAGGTCATGT  1318

Query 1196  ACGTAGAAGGGACTGCAGTTGTGATGGGTTTTGAAGATCCCATGCTACAGACAGATGACACTCCTATTAAACGC  1269
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319  ACGTAGAAGGGACTGCAGTTGTGATGGGTTTTGAAGATCCCATGCTACAGACAGATGACACTCCTATTAAACGC  1392

Query 1270  TGTCTGCAAACCAAATGGCCATACATTGAGTTACTCTGGACCACAGATCGCTCTCCTTCACTAAAT--------  1335
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
Sbjct 1393  TGTCTGCAAACCAAATGGCCATACATTGAGTTACTCTGGACCACAGATCGCTCTCCTTCACTAAATTAATTTGT  1466

Query 1336  --------------------------------------------------------------------------  1335
                                                                                      
Sbjct 1467  CTAAGTATTTATAAGGAAGATCTTAATAACAGATGTTGAAAGAAGGAGTCAAGACTGGCAATTGGCTGGATTAA  1540

Query 1336  --------------------------------------------------------------------------  1335
                                                                                      
Sbjct 1541  GCTAAACACTGGTATCACTGATTAACTGTAAATAACAATTAAAAACACATTTTCAGTGTTTATGATATGTTTAA  1614

Query 1336  --------------------------------------------------------------------------  1335
                                                                                      
Sbjct 1615  ATTATTTGTCCTAAAGCTTTATGTTAAAGATTATCCTATTTTACCCCTTCGTGTGAAATTTACTAGCAAAATTA  1688

Query 1336  --------------------------------------------------------------------------  1335
                                                                                      
Sbjct 1689  AGCTTTCATCAAAGTTCATCACTTTTGCATTCAGATACTTGGTCATTTACTTACCAAATTACAAACGCAATACT  1762

Query 1336  --------------------------------------------------------------------------  1335
                                                                                      
Sbjct 1763  ACAGCATTTGTATATTAAGTATCACAGTTACTATTGATAAACTACTTTTGGGTTTTATTTCATTGAGGCACTTT  1836

Query 1336  --------------------------------------------------------------------------  1335
                                                                                      
Sbjct 1837  TTTTATTGTTTGAATGATTCCGGCTTGTAATATATCAGCCTCTACAATGAAATGCAGAAGAGTTCATTTTTCTA  1910

Query 1336  --------------------------------------------------------------------------  1335
                                                                                      
Sbjct 1911  AGATCTGTTTTTCATTAGAAATATTGACAAATAACACATTGTCAACCTGGATCCTTTGACAATTTACTTAACTC  1984

Query 1336  --------------------------------------------------------------------------  1335
                                                                                      
Sbjct 1985  TGGCATGTTCACAAAAAGTAGAAACTCTAAGAGACCATTACCATTTATTCACAGATGTATAGGGGATGTATTCT  2058

Query 1336  --------------------------------------------------------------------------  1335
                                                                                      
Sbjct 2059  AAAAACTGACAGAAAAGAGAATCTGATAGTCAACACTGTTAACTTTTACTGTGTAATTGCCAAATACACTTTTC  2132

Query 1336  --------------------------------------------------------------------------  1335
                                                                                      
Sbjct 2133  CAAATTTGTCCCAACAGCCCTGTAAGCCAGCTTTCTTCTATATTTATAAACACGATAAATGCATGAGAAGATCT  2206

Query 1336  --------------------------------------------------------------------------  1335
                                                                                      
Sbjct 2207  GTTATTACATTAGTATATTACGTTATTTATTATGATCCTAGTTGATGGCCTAAATAAACACCTTTTTCTTTAAC  2280

Query 1336  ----  1335
                
Sbjct 2281  TGTA  2284

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