Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_04170
- Subject:
- XR_001783191.1
- Aligned Length:
- 4393
- Identities:
- 773
- Gaps:
- 3556
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CAGCCGGCGTGCGCCTGCGCTCCAGCGGGCTGCGCGGAGGCGGCAAGGCGGCGCTGGGGGGCTGGCTCGGGCGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CAGCGGCGGCTGTTGCGGATGGGAGCGGGCCGGTTTGGCGCGCCTATGGAGCGCCAGGGCAGGGCTGCCGCCAC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTCAGCCGCGGTCGGCGAGTCTGCGGACTCGGAAGCGCGGAGGCGGGACCCGCTGAGGCGCCGGGCGAGTAGCG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CGGCGCCGTCGGGGTCCGGGGAGGCGGAGAGTGTGAGACGGGAGCGGCCCGGCTCTCTAGGCGGCTCCACCTCG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GCCGGCCGCCCGCGCGCCGAAGGCCTCCGGAAGAGGCGGCCGCTTTTTCCATGGTTTGGCTTGGATATTGGAGG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AACCTTGGTCAAGCTGGTTTATTTTGAACCTAAAGACATCACTGCTGAAGAAGAAAAGGAGGAAGTGGAGAGTC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TGAAAAGCATCCGGAAGTACCTGACCTCCAATGTGGCTTACGGATCCACAGGCATTCGGGACGTGCACCTTGAG 518
Query 1 ------------------------------------------------------------------ATGCCTGC 8
||||||||
Sbjct 519 CTGAAGGACCTGACTCTGTGTGGACGCAAAGGCAATCTGCACTTTATACGCTTTCCCACCCATGACATGCCTGC 592
Query 9 TTTTATTCAAATGGGCAGAGATAAAAACTTCTCGAGTCTCCACACTGTCTTTTGTGCCACTGGAGGTGGAGCGT 82
|||||||||.|||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||.|.|
Sbjct 593 TTTTATTCAGATGGGCAGAGATAAAAACTTCTCAAGTCTCCACACTGTCTTTTGTGCCACTGGAGGTGGATCAT 666
Query 83 ACAAATTTGAGCAGGATTTTCTCACAATAGGTGATCTTCAGCTTTGCAAACTGGATGAACTAGATTGCTTGATC 156
||||||||||||||||||||||||||||||||||.|||||||||.|.|||||||||||||||||||||||.||.
Sbjct 667 ACAAATTTGAGCAGGATTTTCTCACAATAGGTGACCTTCAGCTTCGAAAACTGGATGAACTAGATTGCTTAATA 740
Query 157 AAAGGAATTTTATACATTGACTCAGTCGGATTCAATGGACGGTCACAGTGCTATTACTTTGAAAACCCTGCTGA 230
||||||||||||||||||||||||||.|||||||||||||||||||||||||||||.|||||||||||||||||
Sbjct 741 AAAGGAATTTTATACATTGACTCAGTTGGATTCAATGGACGGTCACAGTGCTATTATTTTGAAAACCCTGCTGA 814
Query 231 TTCTGAAAAGTGTCAGAAGTTACCATTTGATTTGAAAAATCCGTATCCTCTGCTTCTGGTGAACATTGGCTCAG 304
|||||||||.|||||||||||||||||||||||.||||||||.|||||||||||||||||||||||.|||||||
Sbjct 815 TTCTGAAAAATGTCAGAAGTTACCATTTGATTTAAAAAATCCATATCCTCTGCTTCTGGTGAACATCGGCTCAG 888
Query 305 GGGTTAGCATCTTAGCAGTATATTCCAAAGATAATTACAAACGGGTCACAGGTACTAGTCTTGGAGGAGGAACT 378
|||||||||||||||||||.|||||||||||||||||.||..||||||||||.||.||||||||||||||||||
Sbjct 889 GGGTTAGCATCTTAGCAGTGTATTCCAAAGATAATTATAAGAGGGTCACAGGCACCAGTCTTGGAGGAGGAACT 962
Query 379 TTTTTTGGTCTCTGCTGTCTTCTTACTGGCTGTACCACTTTTGAAGAAGCTCTTGAAATGGCATCTCGTGGAGA 452
||.|||||||||||||||||||||||||||||||..||||||||||||||||||||.|||||||||||||||||
Sbjct 963 TTCTTTGGTCTCTGCTGTCTTCTTACTGGCTGTAGTACTTTTGAAGAAGCTCTTGAGATGGCATCTCGTGGAGA 1036
Query 453 TAGCACCAAAGTGGATAAACTAGTACGAGATATTTATGGAGGGGACTATGAGAGGTTTGGACTGCCAGGCTGGG 526
|||||||||||||||.|||.||||.|||||.|||||||||||.|||||||||||||||||..||||||||||||
Sbjct 1037 TAGCACCAAAGTGGACAAATTAGTTCGAGACATTTATGGAGGAGACTATGAGAGGTTTGGCTTGCCAGGCTGGG 1110
Query 527 CTGTGGCTTCAAGCTTTGGAAACATGATGAGCAAGGAGAAGCGAGAGGCTGTCAGTAAAGAGGACCTGGCCAGA 600
|||||||||||||.|||||||||||||||||||||||||||.|||||||.|.||||||.|||||.||.||||||
Sbjct 1111 CTGTGGCTTCAAGTTTTGGAAACATGATGAGCAAGGAGAAGAGAGAGGCGGCCAGTAAGGAGGATCTTGCCAGA 1184
Query 601 GCGACTTTGATCACCATCACCAACAACATTGGCTCAATAGCAAGAATGTGTGCCCTTAATGAA----------- 663
||.||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||
Sbjct 1185 GCAACTTTGATCACCATCACCAACAACATTGGCTCCATAGCAAGAATGTGTGCCCTTAATGAAGTTTTCTCTGT 1258
Query 664 -------------------------------------------------------------------------- 663
Sbjct 1259 GTAGGCCTGGCTATCCTGGAACTTCCTTTGTATACTAGACTGGCCTCCAGCTCAGACTTGTGTGCTTCTGTTTC 1332
Query 664 -------------------AACATTAACCAGGTGGTATTTGTTGGAAATTTCTTGAGAATTAATACGATCGCCA 718
||||||||||||||.||||||||.||.||||||.|||||.|.||.|||||.||.|
Sbjct 1333 CCAAGTGCTGGGGTTAAAGAACATTAACCAGGTCGTATTTGTCGGCAATTTCCTGAGAGTCAACACGATTGCTA 1406
Query 719 TGCGGCTTTTGGCATATGCTTTGGATTATTGGTCCAAGGGGCAGTTGAAAGCACTTTTTTCGGAACACGAGGGT 792
||||||||.||||.|||||..|||||||.|||||||||||||||.||||||||||.|||||.||.||||||||.
Sbjct 1407 TGCGGCTTCTGGCGTATGCGCTGGATTACTGGTCCAAGGGGCAGCTGAAAGCACTGTTTTCCGAGCACGAGGGA 1480
Query 793 TATTTTGGAGCTGTTGGAGCACTCCTTGAGCTGTTGAAGATCCCG----------------------------- 837
|||||||||||.||||||||||||||.||||||||||||||.||.
Sbjct 1481 TATTTTGGAGCCGTTGGAGCACTCCTCGAGCTGTTGAAGATACCCTGACTTACCGAGAGGACTTCCTGAAACCT 1554
Query 838 -------------------------------------------------------------------------- 837
Sbjct 1555 GCCACAGAGACATCTGTGGATTTTTTTGTTTTGTTTTGTTAAGAGACTCAAGTTTTATGATCGTGTACTACTCA 1628
Query 838 -------------------------------------------------------------------------- 837
Sbjct 1629 AATCAGAGCAAGAAACAAATGTATTTTTCTAAGACATCAAGATAAATTCTTAAAATTTTGTCTAAGGACACCCC 1702
Query 838 -------------------------------------------------------------------------- 837
Sbjct 1703 ATCCCACCCCCGTCTAGGCAGTATGAGGATTTGCTGTTTATAGGGTATTCTCAGGGCAGCGTTATTAACCCCTG 1776
Query 838 -------------------------------------------------------------------------- 837
Sbjct 1777 AGGTGCTTTGGAATCCCAGCATCACCCACTTGGGCATACGTGGAGCTTTCTGGACTCCCACCAGCAGCTGACTG 1850
Query 838 -------------------------------------------------------------------------- 837
Sbjct 1851 CTTGTCCTGTTGAAATGTATGTGAGAATCTAACCGCTTTCATCAGTATGCCTTGGAGGTCATCTTTCTTTGCGC 1924
Query 838 -------------------------------------------------------------------------- 837
Sbjct 1925 GCTGGATCATGTTTAGCCTATGTTAACATACTGAAAATGGGTTATTTCAAGCTTCTGAAAACTTGGCAGGATTG 1998
Query 838 -------------------------------------------------------------------------- 837
Sbjct 1999 TTCTGCATCTGATGTTAAGAGATGGCCTGCATTGTAGCTGAAGGCAAGGGTGGGCCTGTTCACAGCAGCCTTGG 2072
Query 838 -------------------------------------------------------------------------- 837
Sbjct 2073 AGCTGGAATGGAGACCTCGAGCTCTGGCTGGGAAGGATTCTGCCATTCAGCCATGGGTTCTGGTGCCAGCTCTG 2146
Query 838 -------------------------------------------------------------------------- 837
Sbjct 2147 GGGCAACAGAAGGCTCTTGTTGGTTTGGACTATGGGAACTAGGATTGGATTTGGCTGGCTAGCCTGCTTGATGG 2220
Query 838 -------------------------------------------------------------------------- 837
Sbjct 2221 TTCTCAGTTCCCACAGGGATATAGTTGGCTTTTATTACATACTTTGGCCCATTAGGACTAAGGGTTCCATTGTG 2294
Query 838 -------------------------------------------------------------------------- 837
Sbjct 2295 CTGGCAGCACAGTACACGGGGTGTTGCAGGGATGGTAGTTTTCCCTCCTGCTAATCCCTGCTTTGCTTCTGAGA 2368
Query 838 -------------------------------------------------------------------------- 837
Sbjct 2369 GATCCTCAAAACTGCACTTTTATTAGAAAGTTTCTCCATCTGGGGCAGGGCTGTGTTCTTCCCTGCCATCCCTC 2442
Query 838 -------------------------------------------------------------------------- 837
Sbjct 2443 AGGTGACTCCTATTTGACAGTTGTGACCAGTGCTTTGTATTCATGGTTCTGTCTTCCTACATTGAAGCTCCTCC 2516
Query 838 -------------------------------------------------------------------------- 837
Sbjct 2517 CACAGTGTTAGACGAACAAGCCTCAGGATCACAGAGCCCAACAGGATGTGTGGTGCTGTTGTGACCCACACCAT 2590
Query 838 -------------------------------------------------------------------------- 837
Sbjct 2591 CACTGTCTATTTCTTTCCTCAGTTGTGCTCAGCCCAGGGTCATTCTGGGGATGGGTTCTATTTCCTTTAAATAG 2664
Query 838 -------------------------------------------------------------------------- 837
Sbjct 2665 TGTCTCGGGTGGTGAGGGCTAACCTCAAACTCGACATTAATACTGTATAGCTGAGGCTGGCCTTTGAACTGCAG 2738
Query 838 -------------------------------------------------------------------------- 837
Sbjct 2739 ATCTAGTTGCCTTCACCTCCGAAGTGCTGGATTATAGGTGTGCGCCACTAGTAAACTCCATAAATACAAAGGGT 2812
Query 838 -------------------------------------------------------------------------- 837
Sbjct 2813 TTGTTTCAGAGCCTCATCTTTTCCAGTTCTCACCTGCTTCCCTGGCTGCTGTCTACACTCTGACAGTTCCACTT 2886
Query 838 -------------------------------------------------------------------------- 837
Sbjct 2887 TCAAGCTCAACTGAGTCTCGCCAAGCTGTCTTCCTGTTGATTCCAGCACTATTTGCAGAAATACACACATTCCA 2960
Query 838 -------------------------------------------------------------------------- 837
Sbjct 2961 CCTCACAACCACTTCTGAACTGGGAGCCACTTGCAGTGTCTGTTAGAACCATCTTGTCTTTTCTTAGCTGTCCA 3034
Query 838 -------------------------------------------------------------------------- 837
Sbjct 3035 ATCCAGGTCATTGTTTTGATAGCCTAAAGCTCCACTTCACTTCTCCCACTCAGAAAGGAAGGTTTGTGGCCCTG 3108
Query 838 -------------------------------------------------------------------------- 837
Sbjct 3109 GAGCACAAAGTAGCTTGAACTAAGATGGGAGGAGGCTGGCCTACGCAAAGAGGTAATGTCTTGTGGGCATCAGT 3182
Query 838 -------------------------------------------------------------------------- 837
Sbjct 3183 GGCTGGGTCTAGGGGGTGCTTGAAGATACCTAGTTTGGTTTTAGAACGCCTGGTTTTGAGAACCCCTAAAGCAC 3256
Query 838 -------------------------------------------------------------------------- 837
Sbjct 3257 GGGTCATTTGGGTCAGAGACAACGCAGAGGATGTATTTATTTGTGGGAGGAGTTAGTGAACCCCAGAGCACAAG 3330
Query 838 -------------------------------------------------------------------------- 837
Sbjct 3331 AAAATAATAATAATCGGCAGTGAAGGAGCAGGTTACAGGGAAAACAACCTGGGGTACAGGGATCCGGGAGTCCA 3404
Query 838 -------------------------------------------------------------------------- 837
Sbjct 3405 AGAGCAAACGGTTATAGAGATGGGTTACAAGGTTGCTTGGAGGTAGCTCCAGGGTTACGTGTGCCTTGGTGAAG 3478
Query 838 -------------------------------------------------------------------------- 837
Sbjct 3479 CCATGGGCTAAAGCTGAGTTCAGAGCCGCTCACCACCTGGCATTAGGGTTAGGGCAAGTTCTGGGAATGTGGCA 3552
Query 838 -------------------------------------------------------------------------- 837
Sbjct 3553 GACTGTCAAAGGACAAAGCTATATACATCAAGCCACCACAAATGCAATGCATGGTGTGGTGTGGCCTGATGCCT 3626
Query 838 -------------------------------------------------------------------------- 837
Sbjct 3627 TTCCCCCATCAGTGTGCCACACCTTACCTCGCCCTAGTGCAAAAGTTGACAGGTCCAAATACAAAGTATTTCAA 3700
Query 838 -------------------------------------------------------------------------- 837
Sbjct 3701 AATTTGCTCTTTATTTACACGTTTGGGTCGATTACATGCATGTTTTATTTTTAAACAAGTGATTAGCAAAAAAT 3774
Query 838 -------------------------------------------------------------------------- 837
Sbjct 3775 GCATTAAAGTTTTAAAATAGCAATTAAATATACAAAAATATAGCTTACAAAAACCAATGTTTAAAAATATTCTG 3848
Query 838 -------------------------------------------------------------------------- 837
Sbjct 3849 CTGCAGAATTCTTAGTGTACAAACACGTCTATGAAACCTGAGGCTCAGCATTTCATAAACCTTTTTTGAGGGAG 3922
Query 838 -------------------------------------------------------------------------- 837
Sbjct 3923 TTATATCTAGTAAATAAGCCCCATAGGGCTAAACGACAAGACTAAAGTGCCATTCCTCCACCTTCCTGGACATG 3996
Query 838 -------------------------------------------------------------------------- 837
Sbjct 3997 TCCTCAGACAGAGGCAATGGCCCCAAGCCGTCACATTCTCCACCACAGCCTGGAAGGAGAGGCATGGACGGCGC 4070
Query 838 -------------------------------------------------------------------------- 837
Sbjct 4071 TGAGGGTTCAACCACATGAGTCCCTTAACACTGGTGAGGTCATGATCTGAGCTACAGCGTGTCTTTGAAACAGC 4144
Query 838 -------------------------------------------------------------------------- 837
Sbjct 4145 AGGGGTAGCTTTTCCTGATCCTGTGAACAAAGGAACGAAGAATTTGGATACGTGCTGAGCTAACTGGAATAAAA 4218
Query 838 -------------------------------------------------------------------------- 837
Sbjct 4219 GCATCTTGAAATAATTTGGGTTCTAAAGCTGAACTTGAAAACTGATAGGTCCTGTTAATCTTATTTAAAAAACC 4292
Query 838 -------------------------------------------------------------------------- 837
Sbjct 4293 TTTACCTGGCATTTTAGGTCCCTACCTCTAAGATTAAGTTAAATACTTTGATGGTCCCATTTAAGCAATTTTTT 4366
Query 838 --------------------------- 837
Sbjct 4367 AAAAATAAAAATTTATTTTTATGTGTA 4393
