Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_04171
- Subject:
- XR_001751399.1
- Aligned Length:
- 3560
- Identities:
- 2130
- Gaps:
- 1226
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GAGTGCGTGGAGGGAGCCAGGCTCCGGCTCGCCTGATGGATTGACTTGGAGATGGATCGAATTACACCATTTGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGTGCATCGGTTTGTTTTGCTCCTGCTCTGTCCCGCTGCTGCTGCTGCTGCTGCAAGGGGTGGTGGCGAGTTTC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGGATTCTATCAAGGAAGCCAAGACCTAAGGAGACAGAGGGATATCTATTTTTACAATATTTTTCTTTATTTTC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TTTCTTCCTTGCGCGTGGCAAGCTTTTTTTTTTCTTTTTCTTTTTTCTTACCAGCCTCCCCCCAATGAGGTAGC 296
Query 1 -------------------------------------------------ATGAGGGTCTTCCTGCTTTGTGCCT 25
|||||||||||||||||||||||||
Sbjct 297 TCAGTGGCATTTCTGAGCAGGGGCCACCCTGACTTCACCTTGGCCCACCATGAGGGTCTTCCTGCTTTGTGCCT 370
Query 26 ACATACTGCTGCTGATGGTTTCCCAGTTGAGGGCAGTCAGCTTTCCTGAAGATGATGAACCCCTTAATACTGTC 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 ACATACTGCTGCTGATGGTTTCCCAGTTGAGGGCAGTCAGCTTTCCTGAAGATGATGAACCCCTTAATACTGTC 444
Query 100 GACTATCACTATTCAAGGCAATATCCGGTTTTTAGAGGACGCCCTTCAGGCAATGAATCGCAGCACAGGCTGGA 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GACTATCACTATTCAAGGCAATATCCGGTTTTTAGAGGACGCCCTTCAGGCAATGAATCGCAGCACAGGCTGGA 518
Query 174 CTTTCAGCTGATGTTGAAAATTCGAGACACACTTTATATTGCTGGCAGGGATCAAGTTTATACAGTAAACTTAA 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CTTTCAGCTGATGTTGAAAATTCGAGACACACTTTATATTGCTGGCAGGGATCAAGTTTATACAGTAAACTTAA 592
Query 248 ATGAAATGCCCAAAACAGAAGTAATACCCAACAAGAAACTGACATGGCGATCAAGACAACAGGATCGAGAAAAC 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 ATGAAATGCCCAAAACAGAAGTAATACCCAACAAGAAACTGACATGGCGATCAAGACAACAGGATCGAGAAAAC 666
Query 322 TGTGCTATGAAAGGCAAGCATAAAGATGAATGCCACAACTTTATCAAAGTATTTGTTCCAAGAAACGATGAGAT 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TGTGCTATGAAAGGCAAGCATAAAGATGAATGCCACAACTTTATCAAAGTATTTGTTCCAAGAAACGATGAGAT 740
Query 396 GGTTTTTGTTTGTGGTACCAATGCATTCAATCCCATGTGTAGATACTACAGGTTGAGTACCTTAGAATATGATG 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GGTTTTTGTTTGTGGTACCAATGCATTCAATCCCATGTGTAGATACTACAGGTTGAGTACCTTAGAATATGATG 814
Query 470 GGGAAGAAATTAGTGGCCTGGCAAGATGCCCATTTGATGCCAGACAAACCAATGTTGCCCTCTTTGCTGATGGG 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GGGAAGAAATTAGTGGCCTGGCAAGATGCCCATTTGATGCCAGACAAACCAATGTTGCCCTCTTTGCTGATGGG 888
Query 544 AAGCTGTATTCTGCCACAGTGGCTGACTTCTTGGCCAGCGATGCCGTTATTTATCGAAGCATGGGTGATGGATC 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AAGCTGTATTCTGCCACAGTGGCTGACTTCTTGGCCAGCGATGCCGTTATTTATCGAAGCATGGGTGATGGATC 962
Query 618 TGCCCTTCGCACAATAAAATATGATTCCAAATGGATAAAAGAGCCACACTTTCTTCATGCCATAGAATATGGAA 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TGCCCTTCGCACAATAAAATATGATTCCAAATGGATAAAAGAGCCACACTTTCTTCATGCCATAGAATATGGAA 1036
Query 692 ACTATGTCTATTTCTTCTTTCGAGAAATCGCTGTCGAACATAATAATTTAGGCAAGGCTGTGTATTCCCGCGTG 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 ACTATGTCTATTTCTTCTTTCGAGAAATCGCTGTCGAACATAATAATTTAGGCAAGGCTGTGTATTCCCGCGTG 1110
Query 766 GCCCGCATATGTAAAAACGACATGGGTGGTTCCCAGCGGGTCCTGGAGAAACACTGGACTTCATTTCTAAAGGC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GCCCGCATATGTAAAAACGACATGGGTGGTTCCCAGCGGGTCCTGGAGAAACACTGGACTTCATTTCTAAAGGC 1184
Query 840 TCGGCTGAACTGTTCTGTCCCTGGAGATTCGTTTTTCTACTTTGATGTTCTGCAGTCTATTACAGACATAATAC 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TCGGCTGAACTGTTCTGTCCCTGGAGATTCGTTTTTCTACTTTGATGTTCTGCAGTCTATTACAGACATAATAC 1258
Query 914 AAATCAATGGCATCCCCACTGTGGTCGGGGTGTTTACCACGCAGCTCAATAGCATCCCTGGTTCTGCTGTCTGT 987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AAATCAATGGCATCCCCACTGTGGTCGGGGTGTTTACCACGCAGCTCAATAGCATCCCTGGTTCTGCTGTCTGT 1332
Query 988 GCATTTAGCATGGATGACATTGAAAAAGTATTCAAAGGACGGTTTAAGGAACAGAAAACTCCAGATTCTGTTTG 1061
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GCATTTAGCATGGATGACATTGAAAAAGTATTCAAAGGACGGTTTAAGGAACAGAAAACTCCAGATTCTGTTTG 1406
Query 1062 GACAGCAGTTCCCGAAGACAAAGTGCCAAAGCCAAGGCCTGGCTGTTGTGCAAAACACGGCCTTGCCGAAGCTT 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 GACAGCAGTTCCCGAAGACAAAGTGCCAAAGCCAAGGCCTGGCTGTTGTGCAAAACACGGCCTTGCCGAAGCTT 1480
Query 1136 ATAAAACCTCCATCGATTTCCCGGATGAAACTCTGTCATTCATCAAATCTCATCCCCTGATGGACTCTGCCGTT 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 ATAAAACCTCCATCGATTTCCCGGATGAAACTCTGTCATTCATCAAATCTCATCCCCTGATGGACTCTGCCGTT 1554
Query 1210 CCACCCATTGCCGATGAGCCCTGGTTCACAAAGACTCGGGTCAGGTACAGACTGACGGCCATCTCAGTGGACCA 1283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CCACCCATTGCCGATGAGCCCTGGTTCACAAAGACTCGGGTCAGGTACAGACTGACGGCCATCTCAGTGGACCA 1628
Query 1284 TTCAGCCGGACCCTACCAGAACTACACAGTCATCTTTGTTGGCTCTGAAGCTGGCATGGTACTTAAAGTTCTGG 1357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 TTCAGCCGGACCCTACCAGAACTACACAGTCATCTTTGTTGGCTCTGAAGCTGGCATGGTACTTAAAGTTCTGG 1702
Query 1358 CAAAGACCAGTCCTTTCTCTTTGAACGACAGCGTATTACTGGAAGAGATTGAAGCCTACAACCATGCAAAGT-- 1429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 CAAAGACCAGTCCTTTCTCTTTGAACGACAGCGTATTACTGGAAGAGATTGAAGCCTACAACCATGCAAAGTAG 1776
Query 1430 -------------------------GCAGTGCTGAGAATGAGGAAGACAAAAA-----GG--------TCATC- 1464
|||.|||| |||||| || |||||
Sbjct 1777 GTATATGTTACGAGAACGCCCTTCAGCACTGCT--------------CAAAAATTTTCGGCATGTATTTCATCT 1836
Query 1465 --TCAT-TACAGTTGGATAAAGATCACCACGCTTTATAT-----GTGGCGTTCTCTAGCT-GCATTATCCGCAT 1529
|||| |.|..|||| || ||.||.|| ||| ||| | ||||.||
Sbjct 1837 AGTCATGTCCTTTTGG-------TC------CTCTAAATTAGCAGTG--GTT-------TGGCATAAT------ 1882
Query 1530 CCCCCTCAGTCGCTGTGAGCGTTATGGATCA-TGTAAAAAGTC------TTGTATTGCATCTCGTGACCCGTAT 1596
||| |.|.||.|..||.|...||| ||.||.||.|| ||||.|| |.||..||.||
Sbjct 1883 -------AGT-GTTTTGTGTTTTTTTTCTCATTGAAATAAATCTTGGGTTTGTTTT---TTTCCCGAGCC---- 1941
Query 1597 TGTGGCT-GGTTAAGCCAGGGATCCTGTGGTAGAGTGACCCCAGGGATGCTGCTGTTAACCGAAGA-------- 1661
.||| || ||.|||| |.|||| |.||.||.||...|||| .||.|
Sbjct 1942 ---TGCTAGG----GCGAGGG-----------GGGTGA----ATGGTTGATGAGTTTAA--AAATAATGCAGCC 1991
Query 1662 CTTCTTTGCTTTCCATAACCACAGTGCTGAAGGATATGAACAAGACACAGAA----TTCGGCAACA-CAGCTC- 1729
|||.|| |||| || |||.||.||||| |||| || |||| ||.|||
Sbjct 1992 CTTGTT---TTTC----AC-------CTGTAGAATATG----------AGAACATTTT----AACAGCACCTCT 2037
Query 1730 ---ATCTAGGGGACTGCCATGGTGTACGATGGGAAGTCCAGTCTGGAGAGTCCAACCAGATGGTCCACATGAAT 1800
|||| ||| .||| |.|.|||| ||||| |.|||||
Sbjct 2038 CTTATCT-------TGC---------AGAT----------------ATATTCCA---AGATG--CTACATG--- 2071
Query 1801 GTCCTCA----TCACCTGTGTCTTTGCTGCTTTTGTTTTGGGGGCATTCATTGCAGGTGTGGCAGTATACTGCT 1870
|| .||.||||| .|||| ||||.||
Sbjct 2072 -----CAGCAGACAGCTGTG-------AGCTT-----------GCATACA------------------------ 2098
Query 1871 ATCGAGACATGTTTGTTCGGAAAAACAGAAAGATCCATAAAGATGCAGAGTCCGCCCAGTCATGCACAGACTCC 1944
.|.|.|||.|||.||.||| ||.||..|||.||||||.|.|
Sbjct 2099 -------------------CACACACACAAATATACAT---------------GCACATACATACACAGAATGC 2138
Query 1945 AGT-----GGAAGTTTTGCCAAACTGAATGGTCTCTTTGACAGCCCTGTCAAGGAAT-ACCAACAGAATATT-- 2010
||| ..||||.||.|| .|..|.||||| ||| |..||.||||||||
Sbjct 2139 AGTACTAGTTAAGTATTTCC-------TTCCTATCTTT----------------AATAAGTAAGAGAATATTTA 2189
Query 2011 GATTCTCC--TAAACTGTATAGTAACCTGCTAACCAGTCGGAAAGAGCTACCACCCAATGGAGATACTAAATCC 2082
|| || |||| |.|..||.|...|||..|.|.|.|.|||| .||||||| ||
Sbjct 2190 GA----CCATTAAA----AAAAAAAACAAATAAGAAATAGAAGAGAG--------AAATGGAG---------CC 2238
Query 2083 ATGGTAATGGACCATCGAGGGCAACCTCCAGAGTTGGCTGCTCTTCCTACTCCTGAGTCTACACCCGTGCTTCA 2156
|.|| ||||.|..||| ||| |
Sbjct 2239 AAGG----GGACTAAGGAG----------AGA-----------------------------------------A 2257
Query 2157 CCAGAAGACCCTGCAGGCCATGAAGAGCCACTCAGAAAAGGCCCATGGCCATGGAGCTTCAAGGAAAGAA--AC 2228
|||||| ||||..| ||.|||.||| ||....|||.| || ||||.| |.
Sbjct 2258 CCAGAA-----------CCATCTA-----ACACAGGAAA-----ATTTATATGCA--TT-----AAAGCACGAT 2303
Query 2229 CCCTCAGTTT-TTTCCGTCTAGTCCGCCACCTCATTCCCCATTAAGTCATG-GGCATATCCCCAGTGCCATTGT 2300
||.| ||| |||| |.||||| || ||| |||
Sbjct 2304 CCTT---TTTATTTC--TATAGTC-------------------AA---ATGTGGC------------------- 2331
Query 2301 TCTTC-CAAATGCTACCCATGACTACAACACGTCTTTCTCAAACTCCAATGCTCACAA-AGCTGAAAAGAAGCT 2372
|||| |||||||.| ||| |||.|.||..|||.|| || ||||..||..|
Sbjct 2332 -CTTCGCAAATGCAA--------------------TTC----ACTTCTATCATCATAACAG--GAAAGCAATGT 2378
Query 2373 TCAAAACATTGATCACCCTCTCACAAAGTCATCCAGTAAGAGAGATCACCGGCGTTCTGTTGATTCCAGAAAT- 2445
|.|||| ||||| |..||||| ||.|||||
Sbjct 2379 TTAAAA--------ACCCT---------TTGTCCAG-----------------------------CCTGAAATT 2406
Query 2446 --ACCCTCAATGATCTCCTGA-----AGCATCTGAATGACCCAAATAGTAACCCCAAAGCCAT---CATGGGAG 2509
|||..|.||| |.|| ||.|..|||||.||..||.||.||...||.||||.|| |.||
Sbjct 2407 TAACCAACCATG-----CAGAGAAGTAGAAGATGAATCACATAATTATTATTTCCCAAGCTATGTACTTG---- 2471
Query 2510 ACATCCAG--ATGGCACACCAGAACTTAATGCTGGATCCCATGGGATCGATGTCTGAGGTCCCA------CCTA 2575
||.| .||..|| |.|||| ||.|.|| .|| |||.||..|||||.|| .|||
Sbjct 2472 ----CCTGGTTTGTTAC-CAAGAA--TATTCCT-TAT-----------GATTTCCCAGGTCTCAGTAATTGCTA 2526
Query 2576 AAGTCCCTAACCGGGAGGCATCGCTATACTCCCCT-------------CCTTCAA---CTCTCCC-CAGAAATA 2632
||| |.|||| |.|||...|| .|||||| .|.|||| || |||||
Sbjct 2527 AAG---CAAACC-------------ACACTTGACTGACTAAACATATGGCTTCAAAATGTATCCCACA-AAATA 2583
Query 2633 GCCCAACCAAGCGAGTGGATGTCCCCACCACTCCTGGAGTCCCAATGACTTCTCTGGAAAGACAAAGAGGTTAT 2706
| ||| ||.|.|| ||| ||||| |.||||||||.||||.||
Sbjct 2584 G-------------GTG-----------CAGTGCT-GAG----AATGA--------GGAAGACAAAAAGGTCAT 2620
Query 2707 CACA------------AAAATTCCTCCCAGAGGCACTCTATATCTG-------CTA--TGCCTAAAAACTTAAA 2759
|.|| |||..|| .||| |.||.|||||.|| ||| ||| .|||..
Sbjct 2621 CTCATTACAGTTGGATAAAGATC--ACCA----CGCTTTATATGTGGCGTTCTCTAGCTGC-------ATTATC 2681
Query 2760 CTCA----CCAAA-----TG---GTGTTTTG--TTATCCAGACAGCCTAGTA-TGAA--CCGTGGAGGATATAT 2816
|.|| ||..| || |.|||.|| |.||..|.|.||.||.||| ||.| .||||
Sbjct 2682 CGCATCCCCCTCAGTCGCTGTGAGCGTTATGGATCATGTAAAAAGTCTTGTATTGCATCTCGTG---------- 2745
Query 2817 GCCCACCCCCACTGGGGCGAAGGTGGACTATATT----CAGGGAACACCAGT----GAGTGTTCATCTGCAGCC 2882
||||..|.||.||| ||| || |||||| .||.|| |||||
Sbjct 2746 ----ACCCGTATTGTGGC-----TGG------TTAAGCCAGGGA--TCCTGTGGTAGAGTG------------- 2789
Query 2883 TTCCCTCTCCAGACAGAGCAGCTACACCAGTAATGGCACTCTTCCTAGGACGGGACTAAAGAGGACGCCGTCCT 2956
||.|||| |||.||.|...|
Sbjct 2790 -----------------------ACCCCAG--------------------------------GGATGCTGCTGT 2808
Query 2957 TAAAACCTGACGTGCCACCAAAGCCTTCCTTTG--TTCCTCA-AACCCCA--TCTGTCAGACCACTGAACAAAT 3025
|| |||.|||.||| ||||| ||| || ||||.|| .|||...|| ..|||||||
Sbjct 2809 TA--------------ACCGAAGACTT-CTTTGCTTTC--CATAACCACAGTGCTGAAGGA--TATGAACAA-- 2861
Query 3026 ACACATAC 3033
Sbjct 2862 -------- 2861
