Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_04248
- Subject:
- NM_001161428.1
- Aligned Length:
- 1858
- Identities:
- 1056
- Gaps:
- 659
Alignment
Query 1 ---------------------------------------------------------------ATGGAGGCGGA 11
|||||||.|||
Sbjct 1 ATGAAGGAAGTCCCAACCAGCTGCTGGTGCCCAGAACTGCAAGCCCTTGATCTGGATCTGGTCATGGAGGTGGA 74
Query 12 GCCGCCGCTCTACCCGATGGCGGGGGCTGCGGGGCCGCAGGGCGACGAGGACCTGCTCGGGGTCCCGGACGGGC 85
|||.|||||||||||..||||.|||||.|||||.||.||.||.||.||.||||.||.|||.||.||.||.||||
Sbjct 75 GCCTCCGCTCTACCCTGTGGCCGGGGCCGCGGGTCCTCAAGGGGATGAAGACCGGCACGGAGTTCCTGATGGGC 148
Query 86 CCGAGGCCCCGCTGGACGAGCTGGTGGGCGCGTACCCCAACTACAACGAGGAGGAGGAGGAGCGCCGCTACTAC 159
|.|||||.||..|||||||.||.|||||.|||||||||||||||||.|||||||||||.|||||||||||||||
Sbjct 149 CAGAGGCTCCCTTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTAC 222
Query 160 CGCCGCAAGCGCCTGGGCGTGCTCAAGAACGTGCTGGCTGCCAGCGCCGGGGGCATGCTCACCTACGGCGTCTA 233
||||||||||||||.||.|||.||||||||||||||||.||||||.|.||.|.||..||.||.|||||||||||
Sbjct 223 CGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTA 296
Query 234 CCTGGGCCTCCTGCAGATGCAGCTGATCCTGCACTACGACGAGACCTACCGCGAGGTGAAGTATGGCAACATGG 307
|||||||||||||||||||||.||||||||||||||.||.|||||||||.|.||||||||||||||||||||||
Sbjct 297 CCTGGGCCTCCTGCAGATGCAACTGATCCTGCACTATGATGAGACCTACAGAGAGGTGAAGTATGGCAACATGG 370
Query 308 GGCTGCCCGACATCGACAGCAAAATGCTGATGGGCATCAACGTGACTCCCATCGCCGCCCTGCTCTACACACCT 381
|||||||.||||||||.|||||.|||||||||||.|||||||||||.||.|||||.||||||||||||||||||
Sbjct 371 GGCTGCCGGACATCGATAGCAAGATGCTGATGGGTATCAACGTGACGCCTATCGCTGCCCTGCTCTACACACCT 444
Query 382 GTGCTCATCAGGTTTTTTGGAACGAAGTGGATGATGTTCCTCGCTGTGGGCATCTACGCCCTCTTTGTCTCCAC 455
||||||||||||||||||||.||.|||||||||||||||.|.||||||||||||||.||||||||||||||.||
Sbjct 445 GTGCTCATCAGGTTTTTTGGTACCAAGTGGATGATGTTCTTGGCTGTGGGCATCTATGCCCTCTTTGTCTCTAC 518
Query 456 CAACTACTGGGAGCGCTACTACACGCTTGTGCCCTCGGCTGTGGCCCTGGGCATGGCCATCGTGCCTCTTTGGG 529
||||||||||||.||||||||||||||.||||||||.||||||||.||||||||||||||.||||||||.||||
Sbjct 519 CAACTACTGGGAACGCTACTACACGCTGGTGCCCTCTGCTGTGGCTCTGGGCATGGCCATTGTGCCTCTGTGGG 592
Query 530 CTTCCATGGGCAACTACATCACCAGGATGGCGCAGAAGTACCATGAGTACTCCCACTACAAGGAGCAGGATGGG 603
|.||||||||||||||.||||||||||||.|.|||||||||.||||.||||||||||||||||||||.||||.|
Sbjct 593 CCTCCATGGGCAACTATATCACCAGGATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAG 666
Query 604 CAGGGGATGA----AGCAGCGGCCTCCGCGGGGCTCCCACGCGCCCTATCTCCTGGTCTTCCAAGCCATCTTCT 673
|||| || |||||||.||.||.||.||.||||||||.||||||||||||||.|||||.||||||||||
Sbjct 667 CAGG----GACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCT 736
Query 674 ACAGCTTCTTCCATCTGAGCTTCGCCTGCGCCCAGCTGCCCATGATTTATTTCCTGAACCACTACCTGTATGAC 747
|.|||||||||||..||||||||||.||.||||||||||||||||||||.|||||.|||.||||||||||||||
Sbjct 737 ATAGCTTCTTCCACTTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGAC 810
Query 748 CTGAACCACACGCTGTACAATGTGCAGAGCTGCGGCACCAACAGCCACGGGATCCTCAGCGGCTTCAACAAGAC 821
|||||||||||.|||..|||.||||||||||||||.||.||.|||||.||.||.||.|..||||||||||||||
Sbjct 811 CTGAACCACACACTGATCAACGTGCAGAGCTGCGGTACTAAGAGCCAAGGCATTCTGAATGGCTTCAACAAGAC 884
Query 822 GGTTCTGCGGACGCTCCCGCGGAGCGGAAACCTCATTGTGGTGGAGAGCGTGCTCATGGCAGTGGCCTTCCTGG 895
|||.||.||||||||.|||||.|||..||||||.|||||.||.|||||||||||||||||.|||||||||.|||
Sbjct 885 GGTCCTTCGGACGCTGCCGCGCAGCAAAAACCTTATTGTTGTAGAGAGCGTGCTCATGGCGGTGGCCTTCTTGG 958
Query 896 CCATGCTGCTGGTGCTGGGTTTGTGCGGAGCCGCTTACCGGCCCACGGAGGAGATCGATCTGCGCAGCGTGGGC 969
||||||||.||||||||||..||||.|||||||||||||||||||||||.||||||||.|||||||||||||||
Sbjct 959 CCATGCTGATGGTGCTGGGCCTGTGTGGAGCCGCTTACCGGCCCACGGAAGAGATCGACCTGCGCAGCGTGGGC 1032
Query 970 TGGGGCAACATCTTCCAGCTGCCCTTCAAGCACGTGCGTGACTACCGCCTGCGCCACCTCGTGCCTTTCTTTAT 1043
|||||||||||||||||||||||||||||.|||||||||||||..|||.|.|||||.||.|||||.||||||||
Sbjct 1033 TGGGGCAACATCTTCCAGCTGCCCTTCAAACACGTGCGTGACTTTCGCTTACGCCATCTGGTGCCCTTCTTTAT 1106
Query 1044 CTACAGCGGCTTCGAGGTGCTCTTTGCCTGCACTGGTATCGCCTTGGGCTATGGCGTGTGCTCGGTGGGGCTGG 1117
||||||.|||||.||||||||||||||||||||||||.|
Sbjct 1107 CTACAGTGGCTTTGAGGTGCTCTTTGCCTGCACTGGTTT----------------------------------- 1145
Query 1118 AGCGGCTGGCTTACCTCCTCGTGGCTTACAGCCTGGGCGCCTCAGCCGCCTCACTCCTGGGCCTGCTGGGCCTG 1191
Sbjct 1146 -------------------------------------------------------------------------- 1145
Query 1192 TGGCTGCCACGCCCGGTGCCCCTGGTGGCCGGAGCAGGGGTGCACCTGCTGCTCACCTTCATCCTCTTTTTCTG 1265
Sbjct 1146 -------------------------------------------------------------------------- 1145
Query 1266 GGCCCCTGTGCCTCGGGTCCTGCAACACAGCTGGATCCTCTATGTGGCAGCTGCCCTTTGGGGTGTGGGCAGTG 1339
||
Sbjct 1146 ------------------------------------------------------------------------TG 1147
Query 1340 CCCTGAACAAGACTGGACTCAGCACACTCCTGGGAATCTTGTACGAAGACAAGGAGAGACAGGACTTCATCTTC 1413
||||| ||||||||||.|||.|.||.||||||||.|||||.|||||||||||||||
Sbjct 1148 CCCTG-------------------CACTCCTGGGCATCCTATATGAAGACAAAGAGAGGCAGGACTTCATCTTC 1202
Query 1414 ACCATCTACCACTGGTGGCAGGCTGTGGCCATCTTCACCGTGTACCTGGGCTCGAGCCTGCACATGAAGGCTAA 1487
||||||||.||||||||||||||.|||||||||||....||||||||||||||.|||.|||.||
Sbjct 1203 ACCATCTATCACTGGTGGCAGGCCGTGGCCATCTTTGTTGTGTACCTGGGCTCCAGCTTGCCCA---------- 1266
Query 1488 GCTGGCGGTGCTGCTGGTGACGCTGGTGGCGGCCGCGGTCTCCTACCTGCGGATGGAGCAGAAGCTGCGCCGGG 1561
Sbjct 1267 -------------------------------------------------------------------------- 1266
Query 1562 GCGTGGCCCCGCGCCAGCCCCGCATCCCGCGGCCCCAGCACAAGGTGCGCGGTTACCGCTACTTGGAGGAGGAC 1635
Sbjct 1267 -------------------------------------------------------------------------- 1266
Query 1636 AACTCGGACGAGAGCGACGCGGAGGGCGAGCATGGGGACGGCGCGGAGGAGGAGGCGCCGCCCGCAGGGCCCAG 1709
Sbjct 1267 -------------------------------------------------------------------------- 1266
Query 1710 GCCTGGCCCCGAGCCCGCTGGACTCGGCCGCCGGCCCTGCCCGTACGAACAGGCGCAGGGGGGAGACGGGCCGG 1783
Sbjct 1267 -------------------------------------------------------------------------- 1266
Query 1784 AGGAGCAG 1791
Sbjct 1267 -------- 1266
