Nucleotide Global Alignment

Description

• Query: ccsbBroad304_04314
• Subject: NM_001163420.1
• Aligned Length: 1252
• Identities: 815
• Gaps: 335

Alignment

Query    1  ATGTCTATTTCCTTGAGCTCTTTAATTTTGTTGCCAATTTGGATAAACATGGCACAAATCCAGCAGGGAGGTCC  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  AGATGAAAAAGAAAAGACTACCGCACTGAAAGATTTATTATCTAGGATAGATTTGGATGAACTAATGAAAAAAG  148
                                                                            ||||||||.|
Sbjct    1  ----------------------------------------------------------------ATGAAAAAGG  10

Query  149  ATGAACCGCCTCTTGATTTTCCTGATACCCTGGAAGGATTTGAATATGCTTTTAATGAAAAGGGACAGTTAAGA  222
            |.|||||.|||.||||||||||.|||||.||||||||.||||||||||||||||||||||||||.|||||||||
Sbjct   11  ACGAACCACCTTTTGATTTTCCAGATACACTGGAAGGCTTTGAATATGCTTTTAATGAAAAGGGGCAGTTAAGA  84

Query  223  CACATAAAAACTGGGGAACCATTTGTTTTTAACTACCGGGAAGATTTACACAGATGGAACCAGAAAAGATACGA  296
            ||||||||||||||||||||||||||||||||||||||.|||||.||||||||.|||||||||||||||||.||
Sbjct   85  CACATAAAAACTGGGGAACCATTTGTTTTTAACTACCGAGAAGACTTACACAGGTGGAACCAGAAAAGATATGA  158

Query  297  GGCTCTAGGAGAGATCATCACGAAG-TATGTATATGAGCTCCTGGAAAAGGATTGTAATTTGAAAAAAGTATCT  369
            .|||||.||.||||||||||| ||| |||||.||||||||||||||||..||.|||||||||||||||.|.|||
Sbjct  159  AGCTCTGGGCGAGATCATCAC-AAGATATGTTTATGAGCTCCTGGAAAGTGACTGTAATTTGAAAAAAATCTCT  231

Query  370  ATTCCAGTAGATGCCACTGAGAGTGAACCAAAGAGTTTTATCTTTATGAGTGAGGATGCTTTGACAAATCCACA  443
            ||||||                                                                    
Sbjct  232  ATTCCA--------------------------------------------------------------------  237

Query  444  GAAACTGATGGTTTTAATTCATGGTAGTGGTGTTGTCAGGGCAGGGCAGTGGGCTAGAAGACTTATTATAAATG  517
                                                                                      
Sbjct  238  --------------------------------------------------------------------------  237

Query  518  AAGATCTGGACAGTGGCACACAGATACCGTTTATTAAAAGAGCTGTGGCTGAAGGATATGGAGTAATAGTACTA  591
                                                              |||||.||||||||.||.||.||.
Sbjct  238  --------------------------------------------------GAAGGGTATGGAGTCATCGTCCTG  261

Query  592  AATCCCAATGAAAACTATATTGAAGTAGAAAAGCCGAAGATACACGTACAGTCATCA---TCTGATAGTTCAGA  662
            ||.||.||||||||||||||.|||||.|||||||.|||.||.||...||||||||||   ||||||.||.||||
Sbjct  262  AACCCAAATGAAAACTATATAGAAGTGGAAAAGCAGAAAATGCATAAACAGTCATCATCTTCTGATGGTACAGA  335

Query  663  TGAACCAGCAGAAAAACGGGAAAGAAAAGATAAAGTTTCTAAAGAAACAAAGAAGCGACGTGATTTCTATGAGA  736
            |||.|||||||..||.||||||||.|.||||||.||.||.||.||||||||||||||.||||||||||||||||
Sbjct  336  TGAGCCAGCAGGGAAGCGGGAAAGGAGAGATAAGGTCTCCAAGGAAACAAAGAAGCGTCGTGATTTCTATGAGA  409

Query  737  AGTATCGTAACCCCCAAAGAGAAAAAGAAATGATGCAATTGTATATCAGAGAAAATGGTTCTCCTGAAGAACAT  810
            ||||.||.|||||.||||..||.||||||||||||||.||||.||||||.||||||||||||||||||||.|||
Sbjct  410  AGTACCGCAACCCTCAAAAGGAGAAAGAAATGATGCAGTTGTTTATCAGGGAAAATGGTTCTCCTGAAGAGCAT  483

Query  811  GCAATCTATGTTTGGGATCATTTCATAGCTCAGGCTGCTGCTGAGAATGTGTTTTTCGTTGCTCACAGCTATGG  884
            ||..|||||||.|||||.|||||||||||.|||||||||||||||||||||||.||.||.|||||.||||||||
Sbjct  484  GCGGTCTATGTGTGGGACCATTTCATAGCCCAGGCTGCTGCTGAGAATGTGTTCTTTGTGGCTCATAGCTATGG  557

Query  885  AGGACTTGCTTTTGTTGAACTGATGATTCAACGAGAAGCCGATGTAAAAAATAAGGTAACTGCTGTGGCATTGA  958
            |||||||||||||||||||||||||||||||||||||||.||||||||||.||||||.||||||||||||||||
Sbjct  558  AGGACTTGCTTTTGTTGAACTGATGATTCAACGAGAAGCAGATGTAAAAAGTAAGGTGACTGCTGTGGCATTGA  631

Query  959  CAGACTCTGTTCACAATGTGTGGCATCAAGAAGCTGGCAAAACGATTCGAGAATGGATGAGAGAGAACTGTTGT  1032
            |||||||||||||||||||||||||||||||||||||||||||.||.|||||||||||||||||||||||||||
Sbjct  632  CAGACTCTGTTCACAATGTGTGGCATCAAGAAGCTGGCAAAACCATCCGAGAATGGATGAGAGAGAACTGTTGT  705

Query 1033  AATTGGGTCTCTAGCTCAGAACCATTAGACACATCAGTGGAGTCCATGCTACCTGATTGCCCCCGGGTCTCAGC  1106
            ||.||||||||.|||||||||||||||||.|||||.|||||.||||||||.|||||.||.|||.|.||.||.||
Sbjct  706  AACTGGGTCTCCAGCTCAGAACCATTAGATACATCGGTGGAATCCATGCTGCCTGACTGTCCCAGAGTGTCTGC  779

Query 1107  AGGCACCGACCGTCACGAGCTAACTTCCTGGAAGAGCTTTCCGTCTATTTTCAAATTCTTTACCGAAGCCTCAG  1180
            |||||||||||||||||||||.|||||||||||||||||.||||||||.|||||.|||||..|.||||||||.|
Sbjct  780  AGGCACCGACCGTCACGAGCTCACTTCCTGGAAGAGCTTCCCGTCTATCTTCAAGTTCTTCGCGGAAGCCTCGG  853

Query 1181  AGGCCAAGACCAGCTCCCTGAAGCCGGCTGTGACGCGCCGCTCCCACCGCATCAAGCACGAAGAGCTG  1248
            |||||||||.||||||.|.|||||||||..|||||||.|||||.|||||.|||||||||||.||||||
Sbjct  854  AGGCCAAGAGCAGCTCGCAGAAGCCGGCCCTGACGCGGCGCTCGCACCGGATCAAGCACGAGGAGCTG  921