Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_04314
- Subject:
- NR_028109.1
- Aligned Length:
- 3977
- Identities:
- 1097
- Gaps:
- 2745
Alignment
Query 1 ATGTCT--ATTTCCT-----------TGAGCTCTTTAATTTTGT-----TGCCAAT-TTG---GATAAA----- 47
||.| |||.||| .|.||..|..||.||.|| .||..|| ||| ||.|||
Sbjct 1 --GTTTAAATTCCCTGCAGACCCGGAAGTGCAATCGAACTTGGTCGGGGCGCGGATCTTGAGAGAGAAAGTCCG 72
Query 48 ---CATGGCACAAATCCAGCAGGGAG---GTCCAGA----TGAAAAAGAA----AAGACT------ACC----- 96
||.|||.|| |||||| |.||||| || ||| |.|.|| |||
Sbjct 73 AGCCAGGGCGCA--------AGGGAGTTCGCCCAGAGATCTG-----GAAGGCCACGCCTCCTCGCACCTACCC 133
Query 97 -----GCACTGAA----------------AGATTTATTATCTAGGATAGATTTGGATGAACTAATGAAAAAAGA 149
|||.||.| ||||||..|.||||||||.||||||||||||||.||||||||.||
Sbjct 134 TCTCAGCATTGCAGCTGGGGACAGAGCTCAGATTTGCTGTCTAGGATCGATTTGGATGAACTCATGAAAAAGGA 207
Query 150 TGAACCGCCTCTTGATTTTCCTGATACCCTGGAAGGATTTGAATATGCTTTTAATGAAAAGGGACAGTTAAGAC 223
.|||||.|||.||||||||||.|||||.||||||||.||||||||||||||||||||||||||.||||||||||
Sbjct 208 CGAACCACCTTTTGATTTTCCAGATACACTGGAAGGCTTTGAATATGCTTTTAATGAAAAGGGGCAGTTAAGAC 281
Query 224 ACATAAAAACTGGGGAACCATTTGTTTTTAACTACCGGGAAGATTTACACAGATGGAACCAGAAAAGATACGAG 297
|||||||||||||||||||||||||||||||||||||.|||||.||||||||.|||||||||||||||||.||.
Sbjct 282 ACATAAAAACTGGGGAACCATTTGTTTTTAACTACCGAGAAGACTTACACAGGTGGAACCAGAAAAGATATGAA 355
Query 298 GCTCTAGGAGAG-------------------------------------------------ATCATCACGAAG- 321
|||||.||.||| |||||||| |||
Sbjct 356 GCTCTGGGCGAGGGCTTAATACCTGTCTAGCCACAGGATTTTGACTTGATACTGGTGCCAAATCATCAC-AAGA 428
Query 322 TATGTATATGAGCTCCTGGAAAAGGATTGTAATTTGAAAAAAGTATCTATTCCAGTAGATGCCACTGAGAGTGA 395
|||||.||||||||||||||||..||.|||||||||||||||.|.|||||||||||||||||||||||||||||
Sbjct 429 TATGTTTATGAGCTCCTGGAAAGTGACTGTAATTTGAAAAAAATCTCTATTCCAGTAGATGCCACTGAGAGTGA 502
Query 396 ACCAAAGAGTTTTATCTTTATGAGTGAGGATGCTTTGACAAATCCACAGAAACTGATGGTTTTAATTCATGGTA 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 ACCAAAGAGTTTTATCTTTATGAGTGAGGATGCTTTGACAAATCCACAGAAACTGATGGTTTTAATTCATGGTA 576
Query 470 GTGGTGTTGTCAGGGCAGGGCAGTGGGCTAGAAGACTTATTATAAATGAAGATCTGGACAGTGGCACACAGATA 543
|||||||||||||||||||.||||||||||||||.||||||||.||||||||||||||||||||||||||||||
Sbjct 577 GTGGTGTTGTCAGGGCAGGTCAGTGGGCTAGAAGGCTTATTATTAATGAAGATCTGGACAGTGGCACACAGATA 650
Query 544 CCGTTTATTAAAAGAGCTGTGGCTGAAGGATATGGAGTAATAGTACTAAATCCCAATGAAAACTATATTGAAGT 617
||.||||||||.||||||.|||.||||||.||||||||.||.||.||.||.||.||||||||||||||.|||||
Sbjct 651 CCTTTTATTAAGAGAGCTATGGATGAAGGGTATGGAGTCATCGTCCTGAACCCAAATGAAAACTATATAGAAGT 724
Query 618 AGAAAAGCCGAAGATACACGTACAGTCATCA---TCTGATAGTTCAGATGAACCAGCAGAAAAACGGGAAAGAA 688
.|||||||.|||.||.||...|||||||||| ||||||.||.|||||||.|||||||..||.||||||||.|
Sbjct 725 GGAAAAGCAGAAAATGCATAAACAGTCATCATCTTCTGATGGTACAGATGAGCCAGCAGGGAAGCGGGAAAGGA 798
Query 689 AAGATAAAGTTTCTAAAGAAACAAAGAAGCGACGTGATTTCTATGAGAAGTATCGTAACCCCCAAAGAGAAAAA 762
.||||||.||.||.||.||||||||||||||.||||||||||||||||||||.||.|||||.||||..||.|||
Sbjct 799 GAGATAAGGTCTCCAAGGAAACAAAGAAGCGTCGTGATTTCTATGAGAAGTACCGCAACCCTCAAAAGGAGAAA 872
Query 763 GAAATGATGCAATTGTATATCAGAGAAAATGGTTCTCCTGAAGAACATGCAATCTATGTTTGGGATCATTTCAT 836
|||||||||||.||||.||||||.||||||||||||||||||||.|||||..|||||||.|||||.||||||||
Sbjct 873 GAAATGATGCAGTTGTTTATCAGGGAAAATGGTTCTCCTGAAGAGCATGCGGTCTATGTGTGGGACCATTTCAT 946
Query 837 AGCTCAGGCTGCTGCTGAGAATGTGTTTTTCGTTGCTCACAGCTATGGAGGACTTGCTTTTGTTGAACTGATGA 910
|||.|||||||||||||||||||||||.||.||.|||||.||||||||||||||||||||||||||||||||||
Sbjct 947 AGCCCAGGCTGCTGCTGAGAATGTGTTCTTTGTGGCTCATAGCTATGGAGGACTTGCTTTTGTTGAACTGATGA 1020
Query 911 TTCAACGAGAAGCCGATGTAAAAAATAAGGTAACTGCTGTGGCATTGACAGACTCTGTTCACAATGTGTGGCAT 984
|||||||||||||.||||||||||.||||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TTCAACGAGAAGCAGATGTAAAAAGTAAGGTGACTGCTGTGGCATTGACAGACTCTGTTCACAATGTGTGGCAT 1094
Query 985 CAAGAAGCTGGCAAAACGATTCGAGAATGGATGAGAGAGAACTGTTGTAATTGGGTCTCTAGCTCAGAACCATT 1058
|||||||||||||||||.||.|||||||||||||||||||||||||||||.||||||||.||||||||||||||
Sbjct 1095 CAAGAAGCTGGCAAAACCATCCGAGAATGGATGAGAGAGAACTGTTGTAACTGGGTCTCCAGCTCAGAACCATT 1168
Query 1059 AGACACATCAGTGGAGTCCATGCTACCTGATTGCCCCCGGGTCTCAGCAGGCACCGACCGTCACGAGCTAACTT 1132
|||.|||||.|||||.||||||||.|||||.||.|||.|.||.||.|||||||||||||||||||||||.||||
Sbjct 1169 AGATACATCGGTGGAATCCATGCTGCCTGACTGTCCCAGAGTGTCTGCAGGCACCGACCGTCACGAGCTCACTT 1242
Query 1133 CCTGGAAGAGCTTTCCGTCTATTTTCAAATTCTTTACCGAAGCCTCAGAGGCCAAGACCAGCTCCCTGAAGCCG 1206
|||||||||||||.||||||||.|||||.|||||..|.||||||||.||||||||||.||||||.|.|||||||
Sbjct 1243 CCTGGAAGAGCTTCCCGTCTATCTTCAAGTTCTTCGCGGAAGCCTCGGAGGCCAAGAGCAGCTCGCAGAAGCCG 1316
Query 1207 GCTGTGACGCGCCGCTCCCACCGCATCAAGCACGAAGAGCTG-------------------------------- 1248
||..|||||||.|||||.|||||.|||||||||||.||||||
Sbjct 1317 GCCCTGACGCGGCGCTCGCACCGGATCAAGCACGAGGAGCTGTGAGCGCGCAGCCGCCCGCCCGCCGCCCGTAG 1390
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 1391 CCTCCTGGCCCCCATTAGATTGCTTTCTTTCTCCAGCGCAGGGTCGTGATGTGTCCGTCTAAATAGCGTTTTGC 1464
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 1465 ATTATTTCTAGATGAGTGCAACTGTCAAAGCAATATGGCTTCAGCGGCCGAGTTGCCTGCGGCTGAGCCGGGCC 1538
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 1539 TCGCACTGTGGGCCCCGGCGACCGAGGCTGAAAGCGCCGGGAGTGCCAGCGCCGGGCGCTCCTAATTGCCCGGC 1612
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 1613 TGATCCGCGGGCGCGGCTGGCCGAGCGGCGTCTGCGCGGTCCTACCGCCCGCTGCAGCGCGGTCGCCGCTGCCC 1686
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 1687 AGCCTCAATTGTGCCCATTTTTAATCCCCTTTAAACCCAGCAAGCTTTTATTCTAAACCTCAAACTTGATTTTA 1760
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 1761 ACCAGGTTTTTTCCTCAGGTCATCTAATGAGCCTCTGTCTTTTACACAAAGCCACACACTCGAGTCCTAAAAAT 1834
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 1835 GCCAACTTTAAATTCAGAACATGATGGACTATGTAGTTTGGGGAGTACAAGTTCTTTCTCCCTATAACGACTTA 1908
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 1909 TTTTCACTTCAACCCCCCCCCCCAAAAAAAAAAAAACTGTACATGAAGTACCGAATCCGAATCCTCATTTGTGC 1982
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 1983 CCAGTTGAACTCCAGTCTTTATGTCTCTGATTTCAGGAGGGAATGTCGAAAGGAAAATATAAACAGATCTTTTA 2056
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 2057 GATGTAGGTATAAGTCTCCATGTTCAGTGAATTTTCCAGTTACTTATAAGAACTGACCTTACTATTAAAATATA 2130
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 2131 TAACACGATGTGTGCGCCAATGCAGGGTGATGGTGGTGGCTGTTGATCCTTACAACCTGTACTTTCACCTTTCT 2204
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 2205 TGTAGCGTGCCCTGTCAGATGCAGGACTTTTTTACTATCATCAAGAAAATAAAACTACATAACCTCTTTCTTCC 2278
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 2279 AAAAGTCCAAGTAGGGTTAATGTGCTTCAGTTTTCATCTGCAGTAGGAAAAGAGAGGCGTAGTGTGAATGGGTT 2352
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 2353 GCTCTTTTGAGGCCAAAATGTTTACTGTTCTCTTCCTGTGATAGGGCGCTGCCCTGTAATTCCAACAGTAAGGC 2426
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 2427 CAACGCGGAAGATAAAATAAGTTGACATTTTACTGGCTTTTGAATTAAAGCATTAGACATTAATTACTTGAAAT 2500
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 2501 TTTTAATTAGTGAAGGTTATATCCAGTGCATGGTGAGATTGTGATTTAATACATCCATCCTTTTTAAAATGAAT 2574
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 2575 GCAATAAGTAATTTGTCTACCTTGTTTGAGACCTTGAGACAGTATAAGCAAAATGAGTCTGAGTTGCTAATGAC 2648
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 2649 AGGGAAGAAAACCTGAGCTCAGCCACCTCATGAGGAATACTCTCATCCCATGAACTGATTTTAGCAAGGTTTAA 2722
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 2723 ACTGGTAACATGTCATGCTCTTTGCACATGCATACATTCAGTAATTCTGTAAGGACAGTAAAGTCCTCAGTGCC 2796
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 2797 ATGGCTGGGCATCTCCTGACATTACTTAGGCAGAAGTACCTTAGGAAAAACCAAAATGGGGCTTTCTCCAGCTT 2870
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 2871 TTGGGCAGTTTAAATATGTTACTCCAACAGTGTCAAGCACATTGAACTGTCATAGTGGCCCTTTACATTTCTGC 2944
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 2945 TTTTAGAAGGATTGGTGAACTCTGTGAAAATAATATCTTTCCAGTTACTGGGCTTGAAACACTGGTGTGCATTG 3018
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 3019 ATTATATTTTACCAAATGTTATAAATTGTCTGGTGTTTTCAGTATGTGAAAATGTTCACAAGAAAGTGAGTTTG 3092
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 3093 CAACATGTAGAGGTTGGAAAAACCTATGCAGGGCTAAATTTGCTAGACTTCTGCAGCTAAATTAAAGCAGAGTT 3166
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 3167 AAAGTGCTCAGCTTATGAACCAAACAAAAGTATCCTGCTCCTGCCCTCCGGGTTCCTCTCTGCAACTCTTAAAC 3240
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 3241 CTTATTCAGAGAAAGTCTCTGTTTCCTTGGGATGAGTACTTTACTGTCACTGGATTGTAACCTTGTCTTCTGTC 3314
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 3315 TAGCAGAGAGCTATTTACAAAGTTACATTTTGTAAATGTCTGTTACTACTTTTGAATCTGTGCTATAGCAACCC 3388
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 3389 AGAGGGAGCCAGGCGCAGCACCCCAGATCACCAGCTGATGAGTGACAAATGATTCTTTACAATGTAGGATTTCT 3462
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 3463 TGACCTGTTGATTGGGTTGCTGTTGGTATATGTGTAAGGATGTTATTCACCTCAGCTTTCTTGGGATAACAACA 3536
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 3537 AGCACTTGGCAGTACCCTGCCTACAGGGAGGCCAGGGTTAATATTTCTCATCTGGCCTTCTCCCTATTTTTATT 3610
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 3611 CTAGGCACACAGTGGTAGAAAGGTAAGGTGTGAGCTTTTTTAAAAATAAATCTTATACTTAGTTCTTAAAGTAA 3684
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 3685 ATAGATGGAAAGAGACATAAATTGGAAATTCAAAATAGTCTGATTCAAGCTTTGGAGCTTTTTCGGGTACCTAA 3758
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 3759 CACACAGTCCTTGGAAGTCATCATGGATGTTTGCTAGACCATCTACGTGTAATAATTGTTCTTTTCTCACAATT 3832
Query 1249 -------------------------------------------------------------------------- 1248
Sbjct 3833 CTGCCTTGTGCTTCCTGAAATGCATTTTTGTTTGTTTATATGTCAAAAATAATAAAGTGTGGACCTCCTATAAT 3906
Query 1249 ------------------------------------------------------- 1248
Sbjct 3907 CTTGTTTACCATTTTAAAATAAAATTTTCCAACAAAGCAAAAAAAAAAAAAAAAA 3961
