Nucleotide Global Alignment

Description

Query:
ccsbBroad304_04314
Subject:
XM_006517352.2
Aligned Length:
1346
Identities:
1020
Gaps:
190

Alignment

Query    1  ---ATGTCT--ATTTCCT-----------TGAGCTCTTTAATTTTGT-----TGCCAAT-TTG---GATAAA--  47
               |.||.|  |||.|||           .|.||..|..||.||.||     .||..|| |||   ||.|||  
Sbjct    1  ATGACGTTTAAATTCCCTGCAGACCCGGAAGTGCAATCGAACTTGGTCGGGGCGCGGATCTTGAGAGAGAAAGT  74

Query   48  ------CATGGCACAAATCCAGCAGGGAG---GTCCAGA----TGAAAAAGAA----AAGACT------ACC--  96
                  ||.|||.||        ||||||   |.|||||    ||     |||    |.|.||      |||  
Sbjct   75  CCGAGCCAGGGCGCA--------AGGGAGTTCGCCCAGAGATCTG-----GAAGGCCACGCCTCCTCGCACCTA  135

Query   97  --------GCACTGAA----------------AGATTTATTATCTAGGATAGATTTGGATGAACTAATGAAAAA  146
                    |||.||.|                ||||||..|.||||||||.||||||||||||||.||||||||
Sbjct  136  CCCTCTCAGCATTGCAGCTGGGGACAGAGCTCAGATTTGCTGTCTAGGATCGATTTGGATGAACTCATGAAAAA  209

Query  147  AGATGAACCGCCTCTTGATTTTCCTGATACCCTGGAAGGATTTGAATATGCTTTTAATGAAAAGGGACAGTTAA  220
            .||.|||||.|||.||||||||||.|||||.||||||||.||||||||||||||||||||||||||.|||||||
Sbjct  210  GGACGAACCACCTTTTGATTTTCCAGATACACTGGAAGGCTTTGAATATGCTTTTAATGAAAAGGGGCAGTTAA  283

Query  221  GACACATAAAAACTGGGGAACCATTTGTTTTTAACTACCGGGAAGATTTACACAGATGGAACCAGAAAAGATAC  294
            ||||||||||||||||||||||||||||||||||||||||.|||||.||||||||.|||||||||||||||||.
Sbjct  284  GACACATAAAAACTGGGGAACCATTTGTTTTTAACTACCGAGAAGACTTACACAGGTGGAACCAGAAAAGATAT  357

Query  295  GAGGCTCTAGGAGAGATCATCACGAAG-TATGTATATGAGCTCCTGGAAAAGGATTGTAATTTGAAAAAAGTAT  367
            ||.|||||.||.||||||||||| ||| |||||.||||||||||||||||..||.|||||||||||||||.|.|
Sbjct  358  GAAGCTCTGGGCGAGATCATCAC-AAGATATGTTTATGAGCTCCTGGAAAGTGACTGTAATTTGAAAAAAATCT  430

Query  368  CTATTCCAGTAGATGCCACTGAGAGTGAACCAAAGAGTTTTATCTTTATGAGTGAGGATGCTTTGACAAATCCA  441
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  431  CTATTCCAGTAGATGCCACTGAGAGTGAACCAAAGAGTTTTATCTTTATGAGTGAGGATGCTTTGACAAATCCA  504

Query  442  CAGAAACTGATGGTTTTAATTCATGGTAGTGGTGTTGTCAGGGCAGGGCAGTGGGCTAGAAGACTTATTATAAA  515
            |||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||.||||||||.||
Sbjct  505  CAGAAACTGATGGTTTTAATTCATGGTAGTGGTGTTGTCAGGGCAGGTCAGTGGGCTAGAAGGCTTATTATTAA  578

Query  516  TGAAGATCTGGACAGTGGCACACAGATACCGTTTATTAAAAGAGCTGTGGCTGAAGGATATGGAGTAATAGTAC  589
            ||||||||||||||||||||||||||||||.||||||||.||||||.|||.||||||.||||||||.||.||.|
Sbjct  579  TGAAGATCTGGACAGTGGCACACAGATACCTTTTATTAAGAGAGCTATGGATGAAGGGTATGGAGTCATCGTCC  652

Query  590  TAAATCCCAATGAAAACTATATTGAAGTAGAAAAGCCGAAGATACACGTACAGTCATCA---TCTGATAGTTCA  660
            |.||.||.||||||||||||||.|||||.|||||||.|||.||.||...||||||||||   ||||||.||.||
Sbjct  653  TGAACCCAAATGAAAACTATATAGAAGTGGAAAAGCAGAAAATGCATAAACAGTCATCATCTTCTGATGGTACA  726

Query  661  GATGAACCAGCAGAAAAACGGGAAAGAAAAGATAAAGTTTCTAAAGAAACAAAGAAGCGACGTGATTTCTATGA  734
            |||||.|||||||..||.||||||||.|.||||||.||.||.||.||||||||||||||.||||||||||||||
Sbjct  727  GATGAGCCAGCAGGGAAGCGGGAAAGGAGAGATAAGGTCTCCAAGGAAACAAAGAAGCGTCGTGATTTCTATGA  800

Query  735  GAAGTATCGTAACCCCCAAAGAGAAAAAGAAATGATGCAATTGTATATCAGAGAAAATGGTTCTCCTGAAGAAC  808
            ||||||.||.|||||.||||..||.||||||||||||||.||||.||||||.||||||||||||||||||||.|
Sbjct  801  GAAGTACCGCAACCCTCAAAAGGAGAAAGAAATGATGCAGTTGTTTATCAGGGAAAATGGTTCTCCTGAAGAGC  874

Query  809  ATGCAATCTATGTTTGGGATCATTTCATAGCTCAGGCTGCTGCTGAGAATGTGTTTTTCGTTGCTCACAGCTAT  882
            ||||..|||||||.|||||.|||||||||||.|||||||||||||||||||||||.||.||.|||||.||||||
Sbjct  875  ATGCGGTCTATGTGTGGGACCATTTCATAGCCCAGGCTGCTGCTGAGAATGTGTTCTTTGTGGCTCATAGCTAT  948

Query  883  GGAGGACTTGCTTTTGTTGAACTGATGATTCAACGAGAAGCCGATGTAAAAAATAAGGTAACTGCTGTGGCATT  956
            |||||||||||||||||||||||||||||||||||||||||.||||||||||.||||||.||||||||||||||
Sbjct  949  GGAGGACTTGCTTTTGTTGAACTGATGATTCAACGAGAAGCAGATGTAAAAAGTAAGGTGACTGCTGTGGCATT  1022

Query  957  GACAGACTCTGTTCACAATGTGTGGCATCAAGAAGCTGGCAAAACGATTCGAGAATGGATGAGAGAGAACTGTT  1030
            |||||||||||||||||||||||||||||||||||||||||||||.||.|||||||||||||||||||||||||
Sbjct 1023  GACAGACTCTGTTCACAATGTGTGGCATCAAGAAGCTGGCAAAACCATCCGAGAATGGATGAGAGAGAACTGTT  1096

Query 1031  GTAATTGGGTCTCTAGCTCAGAACCATTAGACACATCAGTGGAGTCCATGCTACCTGATTGCCCCCGGGTCTCA  1104
            ||||.||||||||.|||||||||||||||||.|||||.|||||.||||||||.|||||.||.|||.|.||.||.
Sbjct 1097  GTAACTGGGTCTCCAGCTCAGAACCATTAGATACATCGGTGGAATCCATGCTGCCTGACTGTCCCAGAGTGTCT  1170

Query 1105  GCAGGCACCGACCGTCACGAGCTAACTTCCTGGAAGAGCTTTCCGTCTATTTTCAAATTCTTTACCGAAGCCTC  1178
            ||||                          |.||          |||||                      ||.
Sbjct 1171  GCAG--------------------------TAGA----------GTCTA----------------------CTG  1186

Query 1179  AGAGGCCAAGACCA------------GCTCCCTGAAGCCGGCTGTGACGCGCCGCTCCCACCGCATCAAGCACG  1240
            .||.||||||  ||            |||.||||..|      ||||.|....|.||..|||.|.||       
Sbjct 1187  GGAAGCCAAG--CAAGAAAGTGTATGGCTGCCTGTGG------GTGAAGACATGTTCTGACCTCTTC-------  1245

Query 1241  AAGAGCTG------  1248
                 |||      
Sbjct 1246  -----CTGGTATGT  1254

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