Nucleotide Global Alignment

Description

• Query: ccsbBroad304_04314
• Subject: XM_006517353.3
• Aligned Length: 1328
• Identities: 989
• Gaps: 214

Alignment

Query    1  ---ATGTCT--ATTTCCT-----------TGAGCTCTTTAATTTTGT-----TGCCAAT-TTG---GATAAA--  47
               |.||.|  |||.|||           .|.||..|..||.||.||     .||..|| |||   ||.|||  
Sbjct    1  ATGACGTTTAAATTCCCTGCAGACCCGGAAGTGCAATCGAACTTGGTCGGGGCGCGGATCTTGAGAGAGAAAGT  74

Query   48  ------CATGGCACAAATCCAGCAGGGAG---GTCCAGA----TGAAAAAGAA----AAGACT------ACC--  96
                  ||.|||.||        ||||||   |.|||||    ||     |||    |.|.||      |||  
Sbjct   75  CCGAGCCAGGGCGCA--------AGGGAGTTCGCCCAGAGATCTG-----GAAGGCCACGCCTCCTCGCACCTA  135

Query   97  --------GCACTGAA----------------AGATTTATTATCTAGGATAGATTTGGATGAACTAATGAAAAA  146
                    |||.||.|                ||||||..|.||||||||.||||||||||||||.||||||||
Sbjct  136  CCCTCTCAGCATTGCAGCTGGGGACAGAGCTCAGATTTGCTGTCTAGGATCGATTTGGATGAACTCATGAAAAA  209

Query  147  AGATGAACCGCCTCTTGATTTTCCTGATACCCTGGAAGGATTTGAATATGCTTTTAATGAAAAGGGACAGTTAA  220
            .||.|||||.|||.||||||||||.|||||.||||||||.||||||||||||||||||||||||||.|||||||
Sbjct  210  GGACGAACCACCTTTTGATTTTCCAGATACACTGGAAGGCTTTGAATATGCTTTTAATGAAAAGGGGCAGTTAA  283

Query  221  GACACATAAAAACTGGGGAACCATTTGTTTTTAACTACCGGGAAGATTTACACAGATGGAACCAGAAAAGATAC  294
            ||||||||||||||||||||||||||||||||||||||||.|||||.||||||||.|||||||||||||||||.
Sbjct  284  GACACATAAAAACTGGGGAACCATTTGTTTTTAACTACCGAGAAGACTTACACAGGTGGAACCAGAAAAGATAT  357

Query  295  GAGGCTCTAGGAGAGATCATCACGAAG-TATGTATATGAGCTCCTGGAAAAGGATTGTAATTTGAAAAAAGTAT  367
            ||.|||||.||.||||||||||| ||| |||||.||||||||||||||||..||.|||||||||||||||.|.|
Sbjct  358  GAAGCTCTGGGCGAGATCATCAC-AAGATATGTTTATGAGCTCCTGGAAAGTGACTGTAATTTGAAAAAAATCT  430

Query  368  CTATTCCAGTAGATGCCACTGAGAGTGAACCAAAGAGTTTTATCTTTATGAGTGAGGATGCTTTGACAAATCCA  441
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  431  CTATTCCAGTAGATGCCACTGAGAGTGAACCAAAGAGTTTTATCTTTATGAGTGAGGATGCTTTGACAAATCCA  504

Query  442  CAGAAACTGATGGTTTTAATTCATGGTAGTGGTGTTGTCAGGGCAGGGCAGTGGGCTAGAAGACTTATTATAAA  515
            |||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||.||||||||.||
Sbjct  505  CAGAAACTGATGGTTTTAATTCATGGTAGTGGTGTTGTCAGGGCAGGTCAGTGGGCTAGAAGGCTTATTATTAA  578

Query  516  TGAAGATCTGGACAGTGGCACACAGATACCGTTTATTAAAAGAGCTGTGGCTGAAGGATATGGAGTAATAGTAC  589
            ||||||||||||||||||||||||||||||.||||||||.||||||.|||.||||||.||||||||.||.||.|
Sbjct  579  TGAAGATCTGGACAGTGGCACACAGATACCTTTTATTAAGAGAGCTATGGATGAAGGGTATGGAGTCATCGTCC  652

Query  590  TAAATCCCAATGAAAACTATATTGAAGTAGAAAAGCCGAAGATACACGTACAGTCATCA---TCTGATAGTTCA  660
            |.||.||.||||||||||||||.|||||.|||||||.|||.||.||...||||||||||   ||||||.||.||
Sbjct  653  TGAACCCAAATGAAAACTATATAGAAGTGGAAAAGCAGAAAATGCATAAACAGTCATCATCTTCTGATGGTACA  726

Query  661  GATGAACCAGCAGAAAAACGGGAAAGAAAAGATAAAGTTTCTAAAGAAACAAAGAAGCGACGTGATTTCTATGA  734
            |||||.|||||||..||.||||||||.|.||||||.||.||.||.||||||||||||||.||||||||||||||
Sbjct  727  GATGAGCCAGCAGGGAAGCGGGAAAGGAGAGATAAGGTCTCCAAGGAAACAAAGAAGCGTCGTGATTTCTATGA  800

Query  735  GAAGTATCGTAACCCCCAAAGAGAAAAAGAAATGATGCAATTGTATATCAGAGAAAATGGTTCTCCTGAAGAAC  808
            ||||||.||.|||||.||||..||.||||||||||||||.||||.||||||                       
Sbjct  801  GAAGTACCGCAACCCTCAAAAGGAGAAAGAAATGATGCAGTTGTTTATCAG-----------------------  851

Query  809  ATGCAATCTATGTTTGGGATCATTTCATAGCTCAGGCTGCTGCTGAGAATGTGTTTTTCGTTGCTCACAGCTAT  882
                                                                                      
Sbjct  852  --------------------------------------------------------------------------  851

Query  883  GGAGGACTTGCTTTTGTTGAACTGATGATTCAACGAGAAGCCGATGTAAAAAATAAGGTAACTGCTGTGGCATT  956
                                   ||||||||||||||||||.||||||||||.||||||.||||||||||||||
Sbjct  852  -----------------------GATGATTCAACGAGAAGCAGATGTAAAAAGTAAGGTGACTGCTGTGGCATT  902

Query  957  GACAGACTCTGTTCACAATGTGTGGCATCAAGAAGCTGGCAAAACGATTCGAGAATGGATGAGAGAGAACTGTT  1030
            |||||||||||||||||||||||||||||||||||||||||||||.||.|||||||||||||||||||||||||
Sbjct  903  GACAGACTCTGTTCACAATGTGTGGCATCAAGAAGCTGGCAAAACCATCCGAGAATGGATGAGAGAGAACTGTT  976

Query 1031  GTAATTGGGTCTCTAGCTCAGAACCATTAGACACATCAGTGGAGTCCATGCTACCTGATTGCCCCCGGGTCTCA  1104
            ||||.||||||||.|||||||||||||||||.|||||.|||||.||||||||.|||||.||.|||.|.||.||.
Sbjct  977  GTAACTGGGTCTCCAGCTCAGAACCATTAGATACATCGGTGGAATCCATGCTGCCTGACTGTCCCAGAGTGTCT  1050

Query 1105  GCAGGCACCGACCGTCACGAGCTAACTTCCTGGAAGAGCTTTCCGTCTATTTTCAAATTCTTTACCGAAGCCTC  1178
            |||||||||||||||||||||||.|||||||||||||||||.||||||||.|||||.|||||..|.||||||||
Sbjct 1051  GCAGGCACCGACCGTCACGAGCTCACTTCCTGGAAGAGCTTCCCGTCTATCTTCAAGTTCTTCGCGGAAGCCTC  1124

Query 1179  AGAGGCCAAGACCAGCTCCCTGAAGCCGGCTGTGACGCGCCGCTCCCACCGCATCAAGCACGAAGAGCTG  1248
            .||||||||||.||||||.|.|||||||||..|||||||.|||||.|||||.|||||||||||.||||||
Sbjct 1125  GGAGGCCAAGAGCAGCTCGCAGAAGCCGGCCCTGACGCGGCGCTCGCACCGGATCAAGCACGAGGAGCTG  1194