Nucleotide Global Alignment

Description

• Query: ccsbBroad304_04314
• Subject: XM_006517355.3
• Aligned Length: 1327
• Identities: 854
• Gaps: 350

Alignment

Query    1  ---ATGTCT--ATTTCCT-----------TGAGCTCTTTAATTTTGT-----TGCCAAT-TTG---GATAAA--  47
               |.||.|  |||.|||           .|.||..|..||.||.||     .||..|| |||   ||.|||  
Sbjct    1  ATGACGTTTAAATTCCCTGCAGACCCGGAAGTGCAATCGAACTTGGTCGGGGCGCGGATCTTGAGAGAGAAAGT  74

Query   48  ------CATGGCACAAATCCAGCAGGGAG---GTCCAGA----TGAAAAAGAA----AAGACT------ACC--  96
                  ||.|||.||        ||||||   |.|||||    ||     |||    |.|.||      |||  
Sbjct   75  CCGAGCCAGGGCGCA--------AGGGAGTTCGCCCAGAGATCTG-----GAAGGCCACGCCTCCTCGCACCTA  135

Query   97  --------GCACTGAA----------------AGATTTATTATCTAGGATAGATTTGGATGAACTAATGAAAAA  146
                    |||.||.|                ||||||..|.||||||||.||||||||||||||.||||||||
Sbjct  136  CCCTCTCAGCATTGCAGCTGGGGACAGAGCTCAGATTTGCTGTCTAGGATCGATTTGGATGAACTCATGAAAAA  209

Query  147  AGATGAACCGCCTCTTGATTTTCCTGATACCCTGGAAGGATTTGAATATGCTTTTAATGAAAAGGGACAGTTAA  220
            .||.|||||.|||.||||||||||.|||||.||||||||.||||||||||||||||||||||||||.|||||||
Sbjct  210  GGACGAACCACCTTTTGATTTTCCAGATACACTGGAAGGCTTTGAATATGCTTTTAATGAAAAGGGGCAGTTAA  283

Query  221  GACACATAAAAACTGGGGAACCATTTGTTTTTAACTACCGGGAAGATTTACACAGATGGAACCAGAAAAGATAC  294
            ||||||||||||||||||||||||||||||||||||||||.|||||.||||||||.|||||||||||||||||.
Sbjct  284  GACACATAAAAACTGGGGAACCATTTGTTTTTAACTACCGAGAAGACTTACACAGGTGGAACCAGAAAAGATAT  357

Query  295  GAGGCTCTAGGAGAGATCATCACGAAGTATGTATATGAGCTCCTGGAAAAGGATTGTAATTTGAAAAAAGTATC  368
            ||.|||||.||.|||                                                           
Sbjct  358  GAAGCTCTGGGCGAG-----------------------------------------------------------  372

Query  369  TATTCCAGTAGATGCCACTGAGAGTGAACCAAAGAGTTTTATCTTTATGAGTGAGGATGCTTTGACAAATCCAC  442
                                                                                      
Sbjct  373  --------------------------------------------------------------------------  372

Query  443  AGAAACTGATGGTTTTAATTCATGGTAGTGGTGTTGTCAGGGCAGGGCAGTGGGCTAGAAGACTTATTATAAAT  516
                                                                                      
Sbjct  373  --------------------------------------------------------------------------  372

Query  517  GAAGATCTGGACAGTGGCACACAGATACCGTTTATTAAAAGAGCTGTGGCTGAAGGATATGGAGTAATAGTACT  590
                                                               |||||.||||||||.||.||.||
Sbjct  373  ---------------------------------------------------GAAGGGTATGGAGTCATCGTCCT  395

Query  591  AAATCCCAATGAAAACTATATTGAAGTAGAAAAGCCGAAGATACACGTACAGTCATCA---TCTGATAGTTCAG  661
            .||.||.||||||||||||||.|||||.|||||||.|||.||.||...||||||||||   ||||||.||.|||
Sbjct  396  GAACCCAAATGAAAACTATATAGAAGTGGAAAAGCAGAAAATGCATAAACAGTCATCATCTTCTGATGGTACAG  469

Query  662  ATGAACCAGCAGAAAAACGGGAAAGAAAAGATAAAGTTTCTAAAGAAACAAAGAAGCGACGTGATTTCTATGAG  735
            ||||.|||||||..||.||||||||.|.||||||.||.||.||.||||||||||||||.|||||||||||||||
Sbjct  470  ATGAGCCAGCAGGGAAGCGGGAAAGGAGAGATAAGGTCTCCAAGGAAACAAAGAAGCGTCGTGATTTCTATGAG  543

Query  736  AAGTATCGTAACCCCCAAAGAGAAAAAGAAATGATGCAATTGTATATCAGAGAAAATGGTTCTCCTGAAGAACA  809
            |||||.||.|||||.||||..||.||||||||||||||.||||.||||||.||||||||||||||||||||.||
Sbjct  544  AAGTACCGCAACCCTCAAAAGGAGAAAGAAATGATGCAGTTGTTTATCAGGGAAAATGGTTCTCCTGAAGAGCA  617

Query  810  TGCAATCTATGTTTGGGATCATTTCATAGCTCAGGCTGCTGCTGAGAATGTGTTTTTCGTTGCTCACAGCTATG  883
            |||..|||||||.|||||.|||||||||||.|||||||||||||||||||||||.||.||.|||||.|||||||
Sbjct  618  TGCGGTCTATGTGTGGGACCATTTCATAGCCCAGGCTGCTGCTGAGAATGTGTTCTTTGTGGCTCATAGCTATG  691

Query  884  GAGGACTTGCTTTTGTTGAACTGATGATTCAACGAGAAGCCGATGTAAAAAATAAGGTAACTGCTGTGGCATTG  957
            ||||||||||||||||||||||||||||||||||||||||.||||||||||.||||||.|||||||||||||||
Sbjct  692  GAGGACTTGCTTTTGTTGAACTGATGATTCAACGAGAAGCAGATGTAAAAAGTAAGGTGACTGCTGTGGCATTG  765

Query  958  ACAGACTCTGTTCACAATGTGTGGCATCAAGAAGCTGGCAAAACGATTCGAGAATGGATGAGAGAGAACTGTTG  1031
            ||||||||||||||||||||||||||||||||||||||||||||.||.||||||||||||||||||||||||||
Sbjct  766  ACAGACTCTGTTCACAATGTGTGGCATCAAGAAGCTGGCAAAACCATCCGAGAATGGATGAGAGAGAACTGTTG  839

Query 1032  TAATTGGGTCTCTAGCTCAGAACCATTAGACACATCAGTGGAGTCCATGCTACCTGATTGCCCCCGGGTCTCAG  1105
            |||.||||||||.|||||||||||||||||.|||||.|||||.||||||||.|||||.||.|||.|.||.||.|
Sbjct  840  TAACTGGGTCTCCAGCTCAGAACCATTAGATACATCGGTGGAATCCATGCTGCCTGACTGTCCCAGAGTGTCTG  913

Query 1106  CAGGCACCGACCGTCACGAGCTAACTTCCTGGAAGAGCTTTCCGTCTATTTTCAAATTCTTTACCGAAGCCTCA  1179
            ||||||||||||||||||||||.|||||||||||||||||.||||||||.|||||.|||||..|.||||||||.
Sbjct  914  CAGGCACCGACCGTCACGAGCTCACTTCCTGGAAGAGCTTCCCGTCTATCTTCAAGTTCTTCGCGGAAGCCTCG  987

Query 1180  GAGGCCAAGACCAGCTCCCTGAAGCCGGCTGTGACGCGCCGCTCCCACCGCATCAAGCACGAAGAGCTG  1248
            ||||||||||.||||||.|.|||||||||..|||||||.|||||.|||||.|||||||||||.||||||
Sbjct  988  GAGGCCAAGAGCAGCTCGCAGAAGCCGGCCCTGACGCGGCGCTCGCACCGGATCAAGCACGAGGAGCTG  1056