Nucleotide Global Alignment

Description

• Query: ccsbBroad304_04314
• Subject: XM_017009959.2
• Aligned Length: 1264
• Identities: 811
• Gaps: 443

Alignment

Query    1  ATGTCTATTTCCTTGAGCTCTTTAATTTTGTTGCCAATTTGGATAAACATGGCACAAATCCAGCAGGGAGGTCC  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  AGATGAAAAAGAAAAGACTACCGCACTGAAAGATTTATTATCTAGGATAGATTTGGATGAACTAATGAAAAAAG  148
                                                                            ||||||||||
Sbjct    1  ----------------------------------------------------------------ATGAAAAAAG  10

Query  149  ATGAACCGCCTCTTGATTTTCCTGATACCCTGGAAGGATTTGAATATGCTTTTAATGAAAAGGGACAGTTAAGA  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   11  ATGAACCGCCTCTTGATTTTCCTGATACCCTGGAAGGATTTGAATATGCTTTTAATGAAAAGGGACAGTTAAGA  84

Query  223  CACATAAAAACTGGGGAACCATTTGTTTTTAACTACCGGGAAGATTTACACAGATGGAACCAGAAAAGATACGA  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   85  CACATAAAAACTGGGGAACCATTTGTTTTTAACTACCGGGAAGATTTACACAGATGGAACCAGAAAAGATACGA  158

Query  297  GGCTCTAGGAGAGATCATCACGAAGTATGTATATGAGCTCCTGGAAAAGGATTGTAATTTGAAAAAAGTATCTA  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  159  GGCTCTAGGAGAGATCATCACGAAGTATGTATATGAGCTCCTGGAAAAGGATTGTAATTTGAAAAAAGTATCTA  232

Query  371  TTCCAGTAGATGCCACTGAGAGTGAACCAAAGAGTTTTATCTTTATGAGTGAGGATGCTTTGACAAATCCACAG  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  233  TTCCAGTAGATGCCACTGAGAGTGAACCAAAGAGTTTTATCTTTATGAGTGAGGATGCTTTGACAAATCCACAG  306

Query  445  AAACTGATGGTTTTAATTCATGGTAGTGGTGTTGTCAGGGCAGGGCAGTGGGCTAGAAGACTTATTATAAATGA  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  307  AAACTGATGGTTTTAATTCATGGTAGTGGTGTTGTCAGGGCAGGGCAGTGGGCTAGAAGACTTATTATAAATGA  380

Query  519  AGATCTGGACAGTGGCACACAGATACCGTTTATTAAAAGAGCTGTGGCTGAAGGATATGGAGTAATAGTACTAA  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  381  AGATCTGGACAGTGGCACACAGATACCGTTTATTAAAAGAGCTGTGGCTGAAGGATATGGAGTAATAGTACTAA  454

Query  593  ATCCCAATGAAAACTATATTGAAGTAGAAAAGCCGAAGATACACGTACAGTCATCATCTGATAGTTCAGATGAA  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  455  ATCCCAATGAAAACTATATTGAAGTAGAAAAGCCGAAGATACACGTACAGTCATCATCTGATAGTTCAGATGAA  528

Query  667  CCAGCAGAAAAACGGGAAAGAAAAGATAAAGTTTCTAAAGAAACAAAGAAGCGACGTGATTTCTATGAGAAGTA  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  529  CCAGCAGAAAAACGGGAAAGAAAAGATAAAGTTTCTAAAGAAACAAAGAAGCGACGTGATTTCTATGAGAAGTA  602

Query  741  TCGTAACCCCCAAAGAGAAAAAGAAATGATGCAATTGTATATCAGAGAAAATGGTTCTCCTGAAGAACATGCAA  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  603  TCGTAACCCCCAAAGAGAAAAAGAAATGATGCAATTGTATATCAGAGAAAATGGTTCTCCTGAAGAACATGCAA  676

Query  815  TCTATGTTTGGGATCATTTCATAGCTCAGGCTGCTGCTGAGAATGTGTTTTTCGTTGCTCACAGCTATGGAGGA  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  677  TCTATGTTTGGGATCATTTCATAGCTCAGGCTGCTGCTGAGAATGTGTTTTTCGTTGCTCACAGCTATGGAGGA  750

Query  889  CTTGCTTTTGTTGAACTG------ATGATTCAACGAGAAGCCGATGTAAAAAATAA----------GGTAACTG  946
            ||||||||||||||||||      |||||..|||   ||||            |||          ||.||.||
Sbjct  751  CTTGCTTTTGTTGAACTGCAACTCATGATCAAAC---AAGC------------TAATTCAGATGCTGGGAAGTG  809

Query  947  CTGTGGCATTGACAGACTCTGTTCACAATGTGTGGCATCAAGAAGCTGGCAAAACGATTCGAGAATGGATGAGA  1020
            ||.|.||              ||..|.|||||         ||||       |||.||                
Sbjct  810  CTTTCGC--------------TTAGCTATGTG---------GAAG-------AACCAT----------------  837

Query 1021  GAGAACTGTTGTAATTGGGTCTCTAGCTCAGAACCATTAGACACATCAGTGGAGTCCATGCTACCTGATTGCCC  1094
                                                                                      
Sbjct  838  --------------------------------------------------------------------------  837

Query 1095  CCGGGTCTCAGCAGGCACCGACCGTCACGAGCTAACTTCCTGGAAGAGCTTTCCGTCTATTTTCAAATTCTTTA  1168
                                                                                      
Sbjct  838  --------------------------------------------------------------------------  837

Query 1169  CCGAAGCCTCAGAGGCCAAGACCAGCTCCCTGAAGCCGGCTGTGACGCGCCGCTCCCACCGCATCAAGCACGAA  1242
                                                                                      
Sbjct  838  --------------------------------------------------------------------------  837

Query 1243  GAGCTG  1248
                  
Sbjct  838  ------  837