Nucleotide Global Alignment

Description

• Query: ccsbBroad304_04314
• Subject: XM_017315581.1
• Aligned Length: 1252
• Identities: 859
• Gaps: 299

Alignment

Query    1  ATGTCTATTTCCTTGAGCTCTTTAATTTTGTTGCCAATTTGGATAAACATGGCACAAATCCAGCAGGGAGGTCC  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  AGATGAAAAAGAAAAGACTACCGCACTGAAAGATTTATTATCTAGGATAGATTTGGATGAACTAATGAAAAAAG  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  ATGAACCGCCTCTTGATTTTCCTGATACCCTGGAAGGATTTGAATATGCTTTTAATGAAAAGGGACAGTTAAGA  222
                                                         |||||||||||||||              
Sbjct    1  ---------------------------------------------ATGCTTTTAATGAAA--------------  15

Query  223  CACATAAAAACTGGGGAACCATTTGTTTTTAACTACCGGGAAGATTTACACAGATGGAACCAGAAAAGATACGA  296
                                                                                      
Sbjct   16  --------------------------------------------------------------------------  15

Query  297  GGCTCTAGGAGAGATCATCACGAAG-TATGTATATGAGCTCCTGGAAAAGGATTGTAATTTGAAAAAAGTATCT  369
                         |||||||| ||| |||||.||||||||||||||||..||.|||||||||||||||.|.|||
Sbjct   16  -------------ATCATCAC-AAGATATGTTTATGAGCTCCTGGAAAGTGACTGTAATTTGAAAAAAATCTCT  75

Query  370  ATTCCAGTAGATGCCACTGAGAGTGAACCAAAGAGTTTTATCTTTATGAGTGAGGATGCTTTGACAAATCCACA  443
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   76  ATTCCAGTAGATGCCACTGAGAGTGAACCAAAGAGTTTTATCTTTATGAGTGAGGATGCTTTGACAAATCCACA  149

Query  444  GAAACTGATGGTTTTAATTCATGGTAGTGGTGTTGTCAGGGCAGGGCAGTGGGCTAGAAGACTTATTATAAATG  517
            |||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||.||||||||.||||
Sbjct  150  GAAACTGATGGTTTTAATTCATGGTAGTGGTGTTGTCAGGGCAGGTCAGTGGGCTAGAAGGCTTATTATTAATG  223

Query  518  AAGATCTGGACAGTGGCACACAGATACCGTTTATTAAAAGAGCTGTGGCTGAAGGATATGGAGTAATAGTACTA  591
            ||||||||||||||||||||||||||||.||||||||.||||||.|||.||||||.||||||||.||.||.||.
Sbjct  224  AAGATCTGGACAGTGGCACACAGATACCTTTTATTAAGAGAGCTATGGATGAAGGGTATGGAGTCATCGTCCTG  297

Query  592  AATCCCAATGAAAACTATATTGAAGTAGAAAAGCCGAAGATACACGTACAGTCATCA---TCTGATAGTTCAGA  662
            ||.||.||||||||||||||.|||||.|||||||.|||.||.||...||||||||||   ||||||.||.||||
Sbjct  298  AACCCAAATGAAAACTATATAGAAGTGGAAAAGCAGAAAATGCATAAACAGTCATCATCTTCTGATGGTACAGA  371

Query  663  TGAACCAGCAGAAAAACGGGAAAGAAAAGATAAAGTTTCTAAAGAAACAAAGAAGCGACGTGATTTCTATGAGA  736
            |||.|||||||..||.||||||||.|.||||||.||.||.||.||||||||||||||.||||||||||||||||
Sbjct  372  TGAGCCAGCAGGGAAGCGGGAAAGGAGAGATAAGGTCTCCAAGGAAACAAAGAAGCGTCGTGATTTCTATGAGA  445

Query  737  AGTATCGTAACCCCCAAAGAGAAAAAGAAATGATGCAATTGTATATCAGAGAAAATGGTTCTCCTGAAGAACAT  810
            ||||.||.|||||.||||..||.||||||||||||||.||||.||||||.||||||||||||||||||||.|||
Sbjct  446  AGTACCGCAACCCTCAAAAGGAGAAAGAAATGATGCAGTTGTTTATCAGGGAAAATGGTTCTCCTGAAGAGCAT  519

Query  811  GCAATCTATGTTTGGGATCATTTCATAGCTCAGGCTGCTGCTGAGAATGTGTTTTTCGTTGCTCACAGCTATGG  884
            ||..|||||||.|||||.|||||||||||.|||||||||||||||||||||||.||.||.|||||.||||||||
Sbjct  520  GCGGTCTATGTGTGGGACCATTTCATAGCCCAGGCTGCTGCTGAGAATGTGTTCTTTGTGGCTCATAGCTATGG  593

Query  885  AGGACTTGCTTTTGTTGAACTGATGATTCAACGAGAAGCCGATGTAAAAAATAAGGTAACTGCTGTGGCATTGA  958
            |||||||||||||||||||||||||||||||||||||||.||||||||||.||||||.||||||||||||||||
Sbjct  594  AGGACTTGCTTTTGTTGAACTGATGATTCAACGAGAAGCAGATGTAAAAAGTAAGGTGACTGCTGTGGCATTGA  667

Query  959  CAGACTCTGTTCACAATGTGTGGCATCAAGAAGCTGGCAAAACGATTCGAGAATGGATGAGAGAGAACTGTTGT  1032
            |||||||||||||||||||||||||||||||||||||||||||.||.|||||||||||||||||||||||||||
Sbjct  668  CAGACTCTGTTCACAATGTGTGGCATCAAGAAGCTGGCAAAACCATCCGAGAATGGATGAGAGAGAACTGTTGT  741

Query 1033  AATTGGGTCTCTAGCTCAGAACCATTAGACACATCAGTGGAGTCCATGCTACCTGATTGCCCCCGGGTCTCAGC  1106
            ||.||||||||.|||||||||||||||||.|||||.|||||.||||||||.|||||.||.|||.|.||.||.||
Sbjct  742  AACTGGGTCTCCAGCTCAGAACCATTAGATACATCGGTGGAATCCATGCTGCCTGACTGTCCCAGAGTGTCTGC  815

Query 1107  AGGCACCGACCGTCACGAGCTAACTTCCTGGAAGAGCTTTCCGTCTATTTTCAAATTCTTTACCGAAGCCTCAG  1180
            |||||||||||||||||||||.|||||||||||||||||.||||||||.|||||.|||||..|.||||||||.|
Sbjct  816  AGGCACCGACCGTCACGAGCTCACTTCCTGGAAGAGCTTCCCGTCTATCTTCAAGTTCTTCGCGGAAGCCTCGG  889

Query 1181  AGGCCAAGACCAGCTCCCTGAAGCCGGCTGTGACGCGCCGCTCCCACCGCATCAAGCACGAAGAGCTG  1248
            |||||||||.||||||.|.|||||||||..|||||||.|||||.|||||.|||||||||||.||||||
Sbjct  890  AGGCCAAGAGCAGCTCGCAGAAGCCGGCCCTGACGCGGCGCTCGCACCGGATCAAGCACGAGGAGCTG  957