Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_04397
- Subject:
- XR_931922.1
- Aligned Length:
- 3334
- Identities:
- 549
- Gaps:
- 2785
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAGCCAAGCTAGGGCACTCTGGTGTACAGCCAGTCCCCGCCGCGGAGGTGCCGGTGGAGCCTGGGACCGGGCGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTCTCCGCCCCGCTTTTGCAGCTAGGGGTGTGTTTCAGGGGGGATTGGGGCAAGCCAAGCAGGCGAGGACCCGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCCTGTGCCGCTTTGCCTACCCCTCATCCCTCGGCACCAAGGCTACTTGAGCCCCAGGGTGTTTTTTCCTTGTT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCCGCCACCTCCTGGTCCCTGGCCCAACATGATACTGACCAAAGCTCAGTACGACGAGATAGCCCAGTGCCTAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGTCTGTGCCGCCTACCAGGCAGAGCCTGAGGAAGCTGAAGCAGAGGTTTCCCAGTCAATCGCAGGCCACTCTG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTGAGCATCTTCTCCCAGGAGTACCAGAAACACATTAAAAGAACACATGCCAAACATCATACTTCGGAAGCAAT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TGAAAGTTATTACCAGAGGTACCTGAATGGAGTGGTGAAAAATGGAGCTGCCCCAGTGCTCCTGGACCTGGCCA 518
Query 1 --------------------------ATGGCTCGGCTTATACTGGAGAGGTTTCTACAGGAACACGAGGAAACT 48
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 ATGAGGTGGACTATGCGCCCTCATTAATGGCTCGGCTTATACTGGAGAGGTTTCTACAGGAACACGAGGAAACT 592
Query 49 CCACCCTCCAAGTCTATTATAAATAGTATGCTACGGGACCCTTCTCAGATTCCAGATGGAGTTCTAGCAAATCA 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CCACCCTCCAAGTCTATTATAAATAGTATGCTACGGGACCCTTCTCAGATTCCAGATGGAGTTCTAGCAAATCA 666
Query 123 GGTCTATCAGTGCATTGTGAACGACTGCTGTTACGGACCACTAGTGGACTGCATCAAGC--------------- 181
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GGTCTATCAGTGCATTGTGAACGACTGCTGTTACGGACCACTAGTGGACTGCATCAAGCAGCCCACCTACACCT 740
Query 182 -------------------------------------------------------------------------- 181
Sbjct 741 TTCCCACCACAGCTTATACTCACCAAGGAAAAAATGTGAGAAACCAGCCACCTCAACTTTCCAAAGTGTGACTC 814
Query 182 -------------------------------------------------------------------------- 181
Sbjct 815 CAGGACACAGCTATTAGACAAAAGCATAAACTATGAAGCAAGGAAAGGTAATGATGCAGGAAGCTTCAAATGCT 888
Query 182 -------------------------------------------------------------------------- 181
Sbjct 889 GTGGGTTTCATTTCTGTACCATCAGAGACCTCAGTTTCATGATTCAACATTTTAGATGTAAATAATTTACAACA 962
Query 182 -------------------------------------------------------------------------- 181
Sbjct 963 ATAAAAATGAGAGCACATTTATGTGGAATAGAAGTAAATAATTTAGTTCTAAAGTGTGGGATGCCCCTAGTAAT 1036
Query 182 -------------------------------------------------------------------------- 181
Sbjct 1037 GAGAGACCATTGAGAGTTATTCATCAAATGTCTTCAATGGACTCTGAAAATTTGTGAAATTTTGTGATTTAAAA 1110
Query 182 -------------------------------------------------------------------------- 181
Sbjct 1111 ATGTGTTCCTTTATTTTGTTTCTCTTTAGAAATTTAAAAAGCACAGCCATGTGCCTTGGAAGGCAAGGGACAAC 1184
Query 182 -------------------------------------------------------------------------- 181
Sbjct 1185 TGGAGGAAAAGGCAATAATGATGACTTAGGGCATGTTTTGCTGGAACATAAATGGCCACATCTCTTGAATTCTA 1258
Query 182 -------------------------------------------------------------------------- 181
Sbjct 1259 AGATTTAAACCATATTCACCTGTATGTATTGGTAAAATGCAAGATAATTCTCTAGGAATTTTTTTTTTAATAAA 1332
Query 182 -------------------------------------------------------------------------- 181
Sbjct 1333 TAACGAAGTTTTATTTAAGTTGAACTCGTGCAGTGCATGATCAGAATCAGCTTCTCTGGTAAGCCAAGGAGTGA 1406
Query 182 -------------------------------------------------------------------------- 181
Sbjct 1407 CGTGACCAGGTTGACGTTATCAGTGAAAAGGACAATGAAGTGGCAAAAGTTCAACAACAGTCGACTGGAAGTGA 1480
Query 182 -------------------------------------------------------------------------- 181
Sbjct 1481 AACAAAGAAGTTTCTAAATGTTGGCCTGATGACAAATGTGAATTCACAGAAGATTTACAGAATTCTCTAAGATT 1554
Query 182 ----------------------------ATGCCATTGGTCATGAGCATGAGGTCCTGCTGAGAGACTTGCTTCT 227
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 AGGAATTCTTCTAGGGCAAAGACTGCCTATGCCATTGGTCATGAGCATGAGGTCCTGCTGAGAGACTTGCTTCT 1628
Query 228 AGAGAAAAACCTGTCCTTCCTAGATGAAGATCAGCTTCGTGCAAAGGGTTATGACAAAACACCAGACTTCATTT 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 AGAGAAAAACCTGTCCTTCCTAGATGAAGATCAGCTTCGTGCAAAGGGTTATGACAAAACACCAGACTTCATTT 1702
Query 302 TACAAGTACCAGTTGCTGTAGAAGGGCACATAATTCACTGGATTGAAAGCAAAGCCTCATTTGGTGATGAATGT 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 TACAAGTACCAGTTGCTGTAGAAGGGCACATAATTCACTGGATTGAAAGCAAAGCCTCATTTGGTGATGAATGT 1776
Query 376 AGCCACCACGCCTACCTGCATGACCAGTTCTGGAGCTACTGGAATAGATTTGGGCCAGGCTTAGTCATCTATTG 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 AGCCACCACGCCTACCTGCATGACCAGTTCTGGAGCTACTGGAATAGATTTGGGCCAGGCTTAGTCATCTATTG 1850
Query 450 GTATGGATTTATCCAGGAGCTGGACTGCAACCGGGAAAGGGGCATCCTGCTCAAAGCCTGTTTCCCCACGAACA 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 GTATGGATTTATCCAGGAGCTGGACTGCAACCGGGAAAGGGGCATCCTGCTCAAAGCCTGTTTCCCCACGAACA 1924
Query 524 TTGTCACCTTATGCCACAGCATAGCT------------------------------------------------ 549
||||||||||||||||||||||||||
Sbjct 1925 TTGTCACCTTATGCCACAGCATAGCTTGACCCTGAAGATCCTGGAAGAGAAGCTGGGAGGAAAAGAGACCCAGC 1998
Query 550 -------------------------------------------------------------------------- 549
Sbjct 1999 ATTGCATTACCATCGTGGAATAATCTAGCGCAAACCTAGGAAAGCTGAAGCCACAAAGTCCAAAGCCACCTTTG 2072
Query 550 -------------------------------------------------------------------------- 549
Sbjct 2073 TACTCACCTGCAGAGCTCCAGAAGACCTTGATGGCAGCCTGCCTATGCTGTGTGTTTGCTATATTCAATCTTTA 2146
Query 550 -------------------------------------------------------------------------- 549
Sbjct 2147 CGGCTTCCTGACTTCTGTGACAGTAAGCCAAGTGCAAAAATACACTTGATGAGAATTTCCTCTTTTAATAATGT 2220
Query 550 -------------------------------------------------------------------------- 549
Sbjct 2221 TATTTGAACACCACATATTTTAGATTTATCTTATTTGAAAGTATTAGTTCCATTGTGCCTGGAAACCACACTCC 2294
Query 550 -------------------------------------------------------------------------- 549
Sbjct 2295 TTTAGATTGGGGGCCGAGAGGCGACAACCCAACATTGAGGAGAGTTTATTTTTAAACATGGCTAGTTGTCAGTA 2368
Query 550 -------------------------------------------------------------------------- 549
Sbjct 2369 TGTACGTGAGCTAGTATTTTTATGAGTCGAGTTTTTTAAAGGCACATTCTGTATACTGCTTAGTATATGCATTT 2442
Query 550 -------------------------------------------------------------------------- 549
Sbjct 2443 TATACCATGTAATTATAAAACACTCGAGTAAGTTCAGCATTAGAAATGTTTAGCTTTGTATGAACTGAGTGTGC 2516
Query 550 -------------------------------------------------------------------------- 549
Sbjct 2517 CAGAAATAAACCTGGAGCAATTTTTAAATAAGCAAAATAAAGGAGATTTTTCTATTTGTTCACTTTAATTTATT 2590
Query 550 -------------------------------------------------------------------------- 549
Sbjct 2591 CACTTTTGTGTACTTTTATGTACTGCAAATCAGATTTCAGTCTAAAGCGAAACATCAGTAAGTTAATAATAAAC 2664
Query 550 -------------------------------------------------------------------------- 549
Sbjct 2665 CTATCTTTTGGGAAGTTGAATATTAATCTGTACCCAAAACGTATTTAGTAAAATATTTGCCCCCGCCACCCTGC 2738
Query 550 -------------------------------------------------------------------------- 549
Sbjct 2739 CATGCTGACATAACAACTTTTATAATGTTGAATAGATGATATGGGAAATACTAATAACAACAATGTAATTTTTG 2812
Query 550 -------------------------------------------------------------------------- 549
Sbjct 2813 CAGACAGCTTTAACTTATATACATTGCTTGATTTTTTTCAAAAGACTAAATATGTCATTTATACTTTGTTTATT 2886
Query 550 -------------------------------------------------------------------------- 549
Sbjct 2887 TTCTACCAAAGAAGGTTTGTAAAAATATGCCTGCTGCTTTTCCTTTTGAAGGACACAAACCTGGTCCCAACATG 2960
Query 550 -------------------------------------------------------------------------- 549
Sbjct 2961 TGTGGATTTTAACTCTGAGTGGGGTGCATTAAATCAAAAGAGAGAGGCAGAAGATGAAATGCTAAAGAAGGGTC 3034
Query 550 -------------------------------------------------------------------------- 549
Sbjct 3035 AGGCAAACTTCTGTTTCAGTATAAAATTCATCATGCAGGCTTCTGAGTGAAATAGAATGATTTGAAACCACTAC 3108
Query 550 -------------------------------------------------------------------------- 549
Sbjct 3109 TGTATTGCCTGGATACACACACACACACACACACACACTTTATACAAAAATGTTAAAAGCAGGTTTCCTGGCAT 3182
Query 550 -------------------------------------------------------------------------- 549
Sbjct 3183 GTTCTAAACTGTTTTTTCTTTAGGAATAAATTACATTTATCTGCACAGATGTTGAAAATCCTGTTAAACCCTTG 3256
Query 550 -------------------------------------------------------------------------- 549
Sbjct 3257 TCAAGGATTTGTTTATTTTACATTAAACAAATTTATTATGATGAACGTGAACAAATAAATTAAAAAATAAAAAA 3330
Query 550 ---- 549
Sbjct 3331 GGTA 3334
