Nucleotide Global Alignment

Description

Query:
ccsbBroad304_04413
Subject:
XM_011517615.2
Aligned Length:
1623
Identities:
1330
Gaps:
270

Alignment

Query    1  ATGAGCGCATCTCTGAATTACAAATCTTTTTCCAAAGAGCAGCAGACCATGGATAACTTAGAGAAGCAACTCAT  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGAGCGCATCTCTGAATTACAAATCTTTTTCCAAAGAGCAGCAGACCATGGATAACTTAGAGAAGCAACTCAT  74

Query   75  CTGTCCCATCTGCTTAGAGATGTTCACGAAACCTGTGGTGATTCTCCCTTGTCAGCACAACCTGTGTAGGAAAT  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  CTGTCCCATCTGCTTAGAGATGTTCACGAAACCTGTGGTGATTCTCCCTTGTCAGCACAACCTGTGTAGGAAAT  148

Query  149  GTGCCAGTGATATTTTCCAGGCCTCTAACCCGTATTTGCCCACAAGAGGAGGTACCACCATGGCATCAGGGGGC  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  GTGCCAGTGATATTTTCCAGGCCTCTAACCCGTATTTGCCCACAAGAGGAGGTACCACCATGGCATCAGGGGGC  222

Query  223  CGATTCCGCTGCCCATCCTGTAGACATGAAGTGGTTTTGGATAGACATGGGGTATATGGACTTCAGAGGAACCT  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  CGATTCCGCTGCCCATCCTGTAGACATGAAGTGGTTTTGGATAGACATGGGGTATATGGACTTCAGAGGAACCT  296

Query  297  GCTGGTGGAAAATATCATTGACATCTACAAGCAGGAGTCCACCAGGCCAGAAAAGAAATCCGACCAGCCCATGT  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GCTGGTGGAAAATATCATTGACATCTACAAGCAGGAGTCCACCAGGCCAGAAAAGAAATCCGACCAGCCCATGT  370

Query  371  GCGAGGAACATGAAGAGGAGCGCATCAACATCTACTGTCTGAACTGCGAAGTACCCACCTGCTCTCTGTGCAAG  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GCGAGGAACATGAAGAGGAGCGCATCAACATCTACTGTCTGAACTGCGAAGTACCCACCTGCTCTCTGTGCAAG  444

Query  445  GTGTTTGGTGCACACAAAGACTGCCAGGTGGCTCCCCTCACTCATGTGTTCCAGAGACAGAAGTCTGAGCTCAG  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GTGTTTGGTGCACACAAAGACTGCCAGGTGGCTCCCCTCACTCATGTGTTCCAGAGACAGAAGTCTGAGCTCAG  518

Query  519  TGATGGCATCGCCATCCTCGTGGGCAGCAACGATCGAGTCCAGGGAGTGATCAGCCAGCTGGAAGACACCTGCA  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TGATGGCATCGCCATCCTCGTGGGCAGCAACGATCGAGTCCAGGGAGTGATCAGCCAGCTGGAAGACACCTGCA  592

Query  593  AAACTATCGAGGAATGTTGCAGAAAACAGAAACAAGAGCTTTGTGAGAAGTTTGATTACCTGTATGGCATTTTG  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  AAACTATCGAGGAATGTTGCAGAAAACAGAAACAAGAGCTTTGTGAGAAGTTTGATTACCTGTATGGCATTTTG  666

Query  667  GAGGAGAGGAAGAATGAAATGACCCAAGTCATTACCCGAACCCAAGAGGAGAAACTGGAACATGTCCGTGCTCT  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GAGGAGAGGAAGAATGAAATGACCCAAGTCATTACCCGAACCCAAGAGGAGAAACTGGAACATGTCCGTGCTCT  740

Query  741  GATCAAAAAGTATTCTGATCATTTGGAGAACGTCTCAAAGTTGGTTGAGTCAGGAATTCAGTTTATGGATGAGC  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GATCAAAAAGTATTCTGATCATTTGGAGAACGTCTCAAAGTTGGTTGAGTCAGGAATTCAGTTTATGGATGAGC  814

Query  815  CAGAAATGGCAGTGTTTCTGCAGAATGCCAAAACCCTGCTAAAAAAAATCTCGGAAGCATCAAAGGCATTTCAG  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CAGAAATGGCAGTGTTTCTGCAGAATGCCAAAACCCTGCTAAAAAAAATCTCGGAAGCATCAAAGGCATTTCAG  888

Query  889  ATGGAGAAAATAGAACATGGCTATGAGAACATGAACCACTTCACAGTCAACCTCAATAGAGAAGAAAAGATAAT  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  ATGGAGAAAATAGAACATGGCTATGAGAACATGAACCACTTCACAGTCAACCTCAATAGAGAAGAAAAGATAAT  962

Query  963  ACGTGAAATTGACTTTTACAGAGAAGATGAAGATGAAGAAGAAGAAGAAGGCGGAGAAGGAGAAAAAGAAGGAG  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  ACGTGAAATTGACTTTTACAGAGAAGATGAAGATGAAGAAGAAGAAGAAGGCGGAGAAGGAGAAAAAGAAGGAG  1036

Query 1037  AAGGAGAAGTGGGAGGAGAAGCAGTAGAAGTGGAAGAGGTAGAAAATGTTCAAACAGAGTTTCCAGGAGAAGAT  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  AAGGAGAAGTGGGAGGAGAAGCAGTAGAAGTGGAAGAGGTAGAAAATGTTCAAACAGAGTTTCCAGGAGAAGAT  1110

Query 1111  GAAAACCCAGAAAAAGCTTCAGAGCTCTCTCAGGTGGAGCTGCAGGCTGCCCCTGGGGCACTTCCAGTTTCCTC  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GAAAACCCAGAAAAAGCTTCAGAGCTCTCTCAGGTGGAGCTGCAGGCTGCCCCTGGGGCACTTCCAGTTTCCTC  1184

Query 1185  TCCAGAGCCACCTCCAGCCCTGCCACCTGCTGCGGATGCCCCTGTGACACAG---------------ATTGGAT  1243
            ||||||||||||||||||||||||||||||||||||||||||||||||||||               |.|||.|
Sbjct 1185  TCCAGAGCCACCTCCAGCCCTGCCACCTGCTGCGGATGCCCCTGTGACACAGGGGGAGGTTGTACCCACTGGCT  1258

Query 1244  TTGAG------------------GCTCC--TCCC----------------------------------------  1257
            .||||                  .||||  ||||                                        
Sbjct 1259  CTGAGCAGACCACAGAGTCTGAAACTCCAGTCCCTGCAGCAGCAGAAACTGCGGATCCCTTGTTTTACCCTAGT  1332

Query 1258  ----------------------------------------------CTCCAGGGA--------------CA---  1268
                                                          |.|||||||              ||   
Sbjct 1333  TGGTATAAAGGCCAAACCCGGAAAGCCACCACCAACCCACCTTGCACCCCAGGGAGCGAAGGTCTGGGGCAAAT  1406

Query 1269  ---------------------------------------------GGCTGCAGCTCCAGCGAGT-----GGCAG  1292
                                                         |||.|||||..||||||||     |||||
Sbjct 1407  AGGGCCTCCAGGTTCTGAGGATTCGAATGTACGGAAGGCAGAAGTGGCAGCAGCCGCAGCGAGTGAGAGGGCAG  1480

Query 1293  ----------------------------TGGAGCTGATTCTGAG---------------CCAGC----TCGCCA  1319
                                        ||.||||..||||.||               |.|||    |.|.|.
Sbjct 1481  CTGTGAGTGGTAAGGAAACTAGTGCACCTGCAGCTACTTCTCAGGAGTTAGTAATCTGCCTAGCGCTTTTGGCT  1554

Query 1320  TATCTTCTCCTT-------------------TTC-CTGGTTGA-----ACTCCCTAAATGAA-------  1356
            |.||||.|.|||                   ||| .||.||||     |||   |.||||.|       
Sbjct 1555  TTTCTTATTCTTCACTACATCTGGAGTCAGATTCAGTGCTTGATTTTTACT---TTAATGGATTGGATT  1620

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