Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_04544
- Subject:
- XR_001751415.1
- Aligned Length:
- 4954
- Identities:
- 1128
- Gaps:
- 3826
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATCCGTGGAAGGTAAAAGCTGCTTCCTGTTGGGGCATGAGTCCGGCGCGTGTCGGGTTTTGAGCTGCCGCGGTC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCGGGACTGAGATAAGGCAGCTCCAGCCCCTGGAAGGCCAGAGACTTGCCAGTGTCCCACTAGCGGGCTCTTCG 148
Query 1 ------------------------------------------------------------ATGGCGGAGGAGCG 14
||||||||||||||
Sbjct 149 CAAGAATCCCCCCGGGCCCGCCGCAGCCAGGCGGCGGCCGGCAGAGGGCGCTGCTCGGGCATGGCGGAGGAGCG 222
Query 15 GCCGGGGGCCTGGTTCGGCTTCGGTTTCTGCGGCTTCGGGCAGGAGCTGGGCTCCGGACGCGGGCGCCAGGTGC 88
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GCCGGGGGCCTGGTTCGGCTTCGGTTTCTGCGGCTTCGGGCAGGAGCTGGGCTCCGGACGCGGGCGCCAGGTGC 296
Query 89 ACAGCCCCAGTCCGCTGCGGGCGGGCGTCGACATCTGCCGCGTGAGCGCGAGCTGGAGCTACACCGCTTTCGTG 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ACAGCCCCAGTCCGCTGCGGGCGGGCGTCGACATCTGCCGCGTGAGCGCGAGCTGGAGCTACACCGCTTTCGTG 370
Query 163 ACCCGTGGAGGCCGCTTGGAGCTGTCGGGCTCAGCCAGCGGCGCGGCGGGCCGCTGCAAGGACGCGTGGGCCTC 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 ACCCGTGGAGGCCGCTTGGAGCTGTCGGGCTCAGCCAGCGGCGCGGCGGGCCGCTGCAAGGACGCGTGGGCCTC 444
Query 237 GGAGGGGCTCCTCGCGGTGCTGCGCGCCGGGCCGGGGCCGGAGGCGTTACTGCAGGTCTGGGCGGCCGAATCGG 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GGAGGGGCTCCTCGCGGTGCTGCGCGCCGGGCCGGGGCCGGAGGCGTTACTGCAGGTCTGGGCGGCCGAATCGG 518
Query 311 CGCTGCGTGGGGAGCCATTGTGGGCCCAGAATGTGGTGCCCGAGGCCGAAGGGGAAGACGATCCGGCCGGTGAG 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CGCTGCGTGGGGAGCCATTGTGGGCCCAGAATGTGGTGCCCGAGGCCGAAGGGGAAGACGATCCGGCCGGTGAG 592
Query 385 GCCCAGGCTGGGAGGCTACCCCTGCTGCCCTGCGCCCGTGCCTACGTGAGCCCGCGGGCGCCCTTCTACCGGCC 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GCCCAGGCTGGGAGGCTACCCCTGCTGCCCTGCGCCCGTGCCTACGTGAGCCCGCGGGCGCCCTTCTACCGGCC 666
Query 459 TCTGGCTCCGGAGCTGCGGGCACGCCAGCTGGAGCTGGGCGCCGAGCACGCGTTGCTGCTGGACGCTGCTGGCC 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TCTGGCTCCGGAGCTGCGGGCACGCCAGCTGGAGCTGGGCGCCGAGCACGCGTTGCTGCTGGACGCTGCTGGCC 740
Query 533 AGGTGTTCTCCTGGGGCGGGGGCAGGCATGGACAGCTGGGCCATGGGACCCTGGAGGCAGAGCTGGAGCCACGG 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AGGTGTTCTCCTGGGGCGGGGGCAGGCATGGACAGCTGGGCCATGGGACCCTGGAGGCAGAGCTGGAGCCACGG 814
Query 607 CTGTTGGAGGCGTTGCAGGGCCTAGTCATGGCTGAGGTGGCCGCGGGGGGCTGGCATTCTGTGTGTGTGAGTGA 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CTGTTGGAGGCGTTGCAGGGCCTAGTCATGGCTGAGGTGGCCGCGGGGGGCTGGCATTCTGTGTGTGTGAGTGA 888
Query 681 GACTGGGGATATTTATATCTGGGGCTGGAATGAATCAGGGCAGCTGGCCCTGCCCACCAGGAACCTGGCAGAGG 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GACTGGGGATATTTATATCTGGGGCTGGAATGAATCAGGGCAGCTGGCCCTGCCCACCAGGAACCTGGCAGAGG 962
Query 755 ATGGAGAGACTGTCGCAAGGGAAGCCACAGAACTGAATGAAGATGGTTCTCAGGTGAAGAGAACGGGTGGGGCT 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 ATGGAGAGACTGTCGCAAGGGAAGCCACAGAACTGAATGAAGATGGTTCTCAGGTGAAGAGAACGGGTGGGGCT 1036
Query 829 GAGGATGGAGCCCCTGCCCCCTTCATAGCTGTCCAGCCCTTCCCGGCATTACTGGATCTCCCCATGGGCTCAGA 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GAGGATGGAGCCCCTGCCCCCTTCATAGCTGTCCAGCCCTTCCCGGCATTACTGGATCTCCCCATGGGCTCAGA 1110
Query 903 TGCAGTCAAGGCCAGCTGTGGATCCCGGCACACAGCTGTGGTGACAC--------------------------- 949
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TGCAGTCAAGGCCAGCTGTGGATCCCGGCACACAGCTGTGGTGACACGTGAGTGGGGCTGGGAGGCACTCTGCT 1184
Query 950 -------------------------------------------------------------------------- 949
Sbjct 1185 CCACTCGAGCTGGTGCCTACGGAAGGGGGTGTGGTCGACGGAAAAACTTCTGTCTTAAGGCTTCTGTGGCTCAT 1258
Query 950 -------------------------------------------------------------------------- 949
Sbjct 1259 ACAGAGCAGCTACCTTGCTCAGTGGATAAGCCCCAACCCCCTTGTTGTTTCACAGTAGTTCCCCAGCCTGTCAG 1332
Query 950 -------------------------------------------------------------------------- 949
Sbjct 1333 GCCCAGAAGTTTCTTCCTTCTGGTGGGAGGCTGATGCTTTCTGTCCTCCCTGCACGGCCACAGACACATTCCCT 1406
Query 950 -------------------------------------------------------------------------- 949
Sbjct 1407 GCCCGCCGCCGCCTCTGACAGCAGGGACTGTCCAGTCTGGCATGGAAGACTGCGGCGCTCGGTAGCATGGCACA 1480
Query 950 -------------------------------------------------------------------------- 949
Sbjct 1481 CAGGAAGATCCGCCACTTTTTCCCTCGGGATCCTCTGCCATGCCACGTGTGATCAGCCAGTTGTTAAGAGAATA 1554
Query 950 -------------------------------------------------------------------------- 949
Sbjct 1555 TGTTGTTCCATGCCAGGCAGATCTCATGAGGATTGTAATATGCTAGCTGTGGGCTGTGCCAAGCTGGGCTGGAC 1628
Query 950 -------------------------------------------------------GAACAGGGGAGCTCTACAC 968
|||||||||||||||||||
Sbjct 1629 AGATGCCTTGCCAAAGAACCGTAGTGACAACTATCGATTGTCCTTTTGCTTTCAGGAACAGGGGAGCTCTACAC 1702
Query 969 CTGGGGCTGGGGTAAATATGGACAGCTGGGCCACGAGGACACCACCAGCTTGGATCGGCCTCGCCGTGTGGAAT 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 CTGGGGCTGGGGTAAATATGGACAGCTGGGCCACGAGGACACCACCAGCTTGGATCGGCCTCGCCGTGTGGAAT 1776
Query 1043 ACTTTGTAGATAAGCAACTCCAAGTAAAGGCTGTCACCTGTGGGCCGTGGAACACCTACGTGTATGCTGTGGAG 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 ACTTTGTAGATAAGCAACTCCAAGTAAAGGCTGTCACCTGTGGGCCGTGGAACACCTACGTGTATGCTGTGGAG 1850
Query 1117 AAAGGGAAGAGC-------------------------------------------------------------- 1128
||||||||||||
Sbjct 1851 AAAGGGAAGAGCTGACATGTGTACGTATATGTATATGCAACACCTGTGAGACCCCCATTCAGGTCAAGGAAAAC 1924
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 1925 CATTGCCTGCACCCCAAGGGCCCCATATTTGCCCCTCCCCATCACAGTCCTGCCCTTCACCCTCAAGCACGGTC 1998
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 1999 CTAAACTTGTCTGCACTTTAGAAACACCTGGAGAGCATTGAAAACTCTGCTGCCTAAGGTCAGCATCAATCAAA 2072
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2073 ACAATGAAATCAATGAAACAATGAAACCAGAGCTTCTAGGTGTGTGGCCTGGATAGTGGTAGATTCAAAGCTCC 2146
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2147 ACCCACCTCATCCCAGGTACATTTGATGTGCAGCTGAGATTGGGGCACATTCCAGGTCATCGTCTTCTGTCAGT 2220
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2221 CATTTCCCTGCTTTCGTTTGAATTTTACCATTCTTGTATGCAGCCTTATACGACATAGTTGTGTTTGCTTTTGA 2294
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2295 GTGTTAGATAAATGGAATCCTGTGTATGTGCTTTTGTGTCGTTTTTGTCACTCAGCATTGTATAATCCATCCTT 2368
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2369 GTTGGGTCCTGGAGTTCATTTTTAATGCTATATGGTGTTCTGTTGTATGAATAATACCTCAAGTGATACAGCCT 2442
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2443 TGTTGATGGTCATTTTTATTGTTTCTGATTTTGGTCATTCCACATAATTCTTTGTGCAGTCTTCTGCACATGTG 2516
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2517 CACAAGTTCCTTTGCAGAACATTGAGTTGAATTGCTAAGTCAGGAGATACCTTTAATTTTACTAGATAACTGTT 2590
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2591 GCCCCCAGCAGGGTGGGGTCTACTGTGGCTAAAATGTCAGGTAGATGCACACTGGTTTTAATTGGCATTTCCCT 2664
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2665 GGATACTGATGAGGTTGAGTAGCTTTTCATTTGTTTTGGATGGCTGGGCATGGTGGCTCACACCTGTAGTCCCA 2738
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2739 GCACTTTGGGAGGCTAAGCAGGGAGATTGCTTGAGGCGAAGAGTTCATATGTTTATTGGCCACTTGGAGTTTTT 2812
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2813 CTGTTGTCAAGTGCCTGTTCAAGTTTTCTGGCCTTTTAAAATGTTCTGTATTTTCCTTAGTGATTTTTCTTTTG 2886
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2887 GATATTTCAGATACAAGTCTTTTGAGAGTTAGTATTCAGAGTATCTTCTGCTACAATGTAGTTTGTTTCAGTCT 2960
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2961 CTCTTGGTATTACCAATTTTAATACTTAGGTGATGCTTACTCCATGCCAGGTAAGGCTCAAAGTGCTTTACAAG 3034
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3035 TATCAACTTATTTTGATAAAATAAGCTTATCAGTAGTTTTCTTTATAGTTAAATTCTATTTGTGCATGTGTGTG 3108
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3109 TCTGTGGTTTAGCAAATGTTTCCCACCCATGGGGTCTTTTTTATTGTGGTAAAATATACTGAACATAAAATTTA 3182
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3183 TGTTCAATAAAAAACAAAAATTGTTTTTAACCATTTTAAGTACATAGTTCAGTGACATTATATGCATTCACTGT 3256
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3257 TGTGCAACCGTCACCCCTATGCATTTCCAGAACTTTTTCATCATTCTATGCTGAAACTCTGTGCATTAAACACT 3330
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3331 TAACTCGTCAGTCTCCCCTTCCCCAGCCCCAGGCAACCACAGTCCTAACCTTCTGTTCCTATGATACTGTAAGT 3404
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3405 GCCTCATGTAAGTGAAATCCCATAGTATTTGTCTTTTTATGACTGGCTTATCTCACTTAGCAGCATGTCCTCCA 3478
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3479 AGTTCATCCATGATGTAGCTTATGTATCTAGACTTCCTGCCTTTTAAAGGCTAAGATTCTGTTGTATGTATACA 3552
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3553 CTGCGTTTTATTCATCCGTGCATTGGTGGATATCTGAGTTGTTCACTACAGTCAATAATGTTGCTGGGAACATG 3626
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3627 GGTGTACAACTCTCTTGAGTCTCTGCTTTCAGTTCTTTTGGATATATACCCAGAGTGGAATTGCTGGATTGTGT 3700
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3701 GGTAATTCTAAATTTTTTTGAGGAACTGCCCTGTTTCCCACAGAGGCTGCATCATTTTACATCCCCACTGGAAG 3774
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3775 TGCACACAAATCCTAATTTCTCCACATCCGCGTCCACACTTGTTTTCTATTTCTGGTTAACAGCCATCCTAATG 3848
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3849 GGTGTGAAGTGGTATTTCATTGTGGGTTTTTTTTTTTTTTTTTGGACAGGGTCTCTCTGTTGTCCAGGCTGGAG 3922
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3923 TACAGCCTCCACCTTCTGGGCTTAAGCCATCCTCCCGGGTAGCTGGGGCTACAGGCACGTGCCACCACATCTGG 3996
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3997 CTAGTTTTTTGTATTTTTAGTAGAGATGGGGTTGTTGCATATTGCCCAGGCTGGTCTCAAACTGCTGGGCTGAA 4070
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4071 GCGATCCACTTGCCTTAGCCTCCCAAAGTACTAGGATTATAGGCATGAGCCATCATGCCTGGCCAAGCCATTTT 4144
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4145 TTAAAATGGACAAAAGTCAACAAAGACGACAGAAGGATAGCAAGTGAGCATATGAGAAGATGCTCTACATCATT 4218
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4219 AGTCATTAGGGAGTTGTAAATGAAAACCATAGTGAGACACCACTCCATACACAGAATAACTAGAATTACATAAA 4292
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4293 GGCTGAACATACCAACTGTTGGTGAAGATGTGGAGAAACTGGAACCTTCATACATTACTGGTAGGAATGTAAAA 4366
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4367 TGGTACAACTGCTTTGGAAAACAGTTTGGCATTTCTTCTTTTTTAAGATGGAGTCTTGCTCTGTTGCCCAGGCT 4440
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4441 AGAGTGCAGTGGTGCAATCTCAGCTCACTGCCACTTCCGCCTCCTGAGTTCAAGGAATTCTCCTTCCTCAGCCT 4514
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4515 CCTGAATAGCTGAGATTACAGGTGTGTGCCACCACAGCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTT 4588
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4589 CACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCGTGATCTGCCCACCTTAGCCTCCCAAAGTGCTGGGA 4662
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4663 TTACAGGCGTGAGCCACCATGCCCGGCCCAGTTTGGCATTTCTTAAAAAGTTAAGTGTACACATACCATAGATG 4736
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4737 TGATCCAGCCATTTCACTCCTAGGTATTTATCCAGAAAAAAAAATATATCCATACAAAGACTTGTACATGAATG 4810
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4811 TTTATAACAGCCTTGTTTTTAATAGCCAAAAACTGGAGAAAAGCCAAATGTGAAAAATAAACCTAACAGGCGAA 4884
Query 1129 ---------------------------------------------------------------------- 1128
Sbjct 4885 TAAACTGGTATATCAACACCATGGAATACTAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4954
