Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_04772
- Subject:
- NR_028144.1
- Aligned Length:
- 2981
- Identities:
- 840
- Gaps:
- 2019
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTTTTAGACTGCCTACCAGCGCAGCCTGAGCCGCTGAGTGCCGGTCAGCGGGCGCCGAGAATTGGACCAAATGG 74
Query 1 ------------------------------------------------------ATGGCGTCCGAACTTTGTAA 20
|||||.||||||.|.|||||
Sbjct 75 ACCAGTTTTGACAAGATGTAGTGCGACAGCACTTCCGGTTGGACATGTTCAGTCATGGCATCCGAAATCTGTAA 148
Query 21 GACGATCTCTGTGGCAAGGCTAGAAAAGCACAAGAATTTGTTCTTAAATTATAGGAATCTGCACCATTTTCCAT 94
|||||||||||||||.|||||.|||||||||||||||||||||||||||||.|||||||||||||||||||||.
Sbjct 149 GACGATCTCTGTGGCCAGGCTTGAAAAGCACAAGAATTTGTTCTTAAATTACAGGAATCTGCACCATTTTCCAC 222
Query 95 TGGAGTTACTGAAAGATGAGGGACTGCAGTACTTGGAGAGACTCTATATGAAAAGGAACTCCCTGACATCCTTG 168
|||||||.|||||.||||||||.||||||.||.|||||||.|||||||||||||||||||||||.|||.|||||
Sbjct 223 TGGAGTTGCTGAAGGATGAGGGGCTGCAGCACCTGGAGAGGCTCTATATGAAAAGGAACTCCCTCACAACCTTG 296
Query 169 CCAGAAAACCTTGCTCAGAAGCTTCCAAACCTTGTGGAACTATACCTGCACTCAAATAACATAGTTGTGGTTCC 242
.|||||.||||||||||||||||||||||||||
Sbjct 297 -----------------------------------------GTACCTTCACTCAAATAACATAGTTGTGGTTCC 329
Query 243 GGAAGCCATTGGGTCTCTTGTAAAACTCCAATGTCTGGATCTTAGTGACAATGCCTTAGAAATTGTTTGCCCAG 316
.||||||||.|||||.||.||.||||||||.|||||||||||.|||||||||||||||||.||.||||||||||
Sbjct 330 AGAAGCCATCGGGTCCCTCGTGAAACTCCAGTGTCTGGATCTCAGTGACAATGCCTTAGAGATCGTTTGCCCAG 403
Query 317 AAATTGGTCGTCTGAGAGCTTTACGTCATCTTCGATTAGCTAATAACCAACTGCAATTCCTACCTCCAGAGGTT 390
||||.|||.||||||||||.||.||||||||||||||||||||||||||.||.||.||||||||||
Sbjct 404 AAATCGGTGGTCTGAGAGCGTTGCGTCATCTTCGATTAGCTAATAACCAGCTACAGTTCCTACCTC-------- 469
Query 391 GGCGATTTGAAGGAGCTGCAGACACTAGACATTTCTACCAATCGTTTGCTAACTTTACCCGAGAGGCTTCACAT 464
Sbjct 470 -------------------------------------------------------------------------- 469
Query 465 GTGCCTTTCTCTGCAGTACCTCACTGTGGACCGAAATCGTCTATGGTATGTGCCGCGCCATCTCTGCCAGCTGC 538
||||||||||||||||||||.|||||.|||||.|.||||||||||||||||||||||||||
Sbjct 470 -------------CAGTACCTCACTGTGGACCGCAATCGGCTATGCTGTGTGCCGCGCCATCTCTGCCAGCTGC 530
Query 539 CCAGCCTCAATGAGCTCTCCATGGCTGGAAACCGTCTTGCATTTTTGCCACTTGATTTAGGTCGATCTCGAGAA 612
|||||||||||||||||||||||||||||||||.||||||||.||||||..|||||||||||||.||.||||||
Sbjct 531 CCAGCCTCAATGAGCTCTCCATGGCTGGAAACCATCTTGCATCTTTGCCCATTGATTTAGGTCGCTCCCGAGAA 604
Query 613 CTACAGTATGTATACGTGGATAACAACATTCACCTGAAAGGCTTGCCATCTTATCTGTACAATAAAGTCATCGG 686
||.|||||.||.||.||||||||||||||.||.|||||.|||.||||.||.||.||.|||||.|||||||||||
Sbjct 605 CTGCAGTACGTGTATGTGGATAACAACATCCAGCTGAAGGGCCTGCCCTCATACCTCTACAACAAAGTCATCGG 678
Query 687 GTGCAGTGGCTGTGGTGCTCCCATTCAAGTTTCCGAGGTGAAGCTGCTTTCCTTTTCATCAGGGCAGCGAACCG 760
.||||..||||||||....|||||.|||.|.||.|||||||.||||||..|.||||||||.|||||||..||.|
Sbjct 679 CTGCAACGGCTGTGGCATCCCCATCCAATTGTCAGAGGTGAGGCTGCTGACATTTTCATCTGGGCAGCTGACAG 752
Query 761 TTTTCCTCCCAGCTGAGGTGAAGGCCATAGGGACGGAGCATGATCACGTCCTCCCTCTGCAGGAATTGGCTATG 834
|.|||||||||||.|||||||||.|.|||||.||.|||.|.|||||.|||||.||||||||.|||.||.|.|||
Sbjct 753 TCTTCCTCCCAGCAGAGGTGAAGACAATAGGCACAGAGAAGGATCATGTCCTGCCTCTGCAAGAACTGACCATG 826
Query 835 AGAGGGCTGTATCATACCTACCACAGCTTGCT---GAAAGATTTGAACTTTCTGTCTCCAATCTCATTACCCAG 905
.|..|.||.||.|..|||||||||.| ||| |||||||.||||||||.||||||||||||||||||||||
Sbjct 827 CGGAGTCTCTACCGCACCTACCACGG---GCTTTGGAAAGATCTGAACTTTTTGTCTCCAATCTCATTACCCAG 897
Query 906 AAGTCTCCTAGAGCTGCTGCACTGCCCTCTGGGGCACTGTCATCGGTGTAGTGAGCCTATGTTTACCATCGTCT 979
|||||||||.|||||||||||||||||.||||||||||||||.|.||||||||||||.|||||||||.||||||
Sbjct 898 AAGTCTCCTGGAGCTGCTGCACTGCCCCCTGGGGCACTGTCACCTGTGTAGTGAGCCCATGTTTACCTTCGTCT 971
Query 980 ACCCCAAGCTCTTTCCCTTGAGAGAGACGCCAATGGCAGGGCTGCACCAGTGGAAGACAACTGTTAGTTTTGTG 1053
|.||.|||.||||.|||||||||||||||||.||||||||.|||||||||.|||.|||||.|.||.|.||.|||
Sbjct 972 ATCCTAAGATCTTCCCCTTGAGAGAGACGCCGATGGCAGGCCTGCACCAGAGGAGGACAAGTATTGGCTTCGTG 1045
Query 1054 GCTTACTGCTGCTCCACCCAGTGTCTGCAGACTTTTGACCTGCTGAGT-------------------------- 1101
||||||||||||||||||||||||||||.|||||||.||||||||.||
Sbjct 1046 GCTTACTGCTGCTCCACCCAGTGTCTGCGGACTTTTAACCTGCTGTGTTGATAAACACTCGAGAGCCTTAGGAG 1119
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1120 CACTGCCAGCTCAGCCACTGCGACTGCCTTCCATCGCCAGTGTGTGCGGCCAGGCCAGGAGAGTCCAGCCAGGC 1193
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1194 AGGACAGACCCTTCCATCCTGCCTGCCCTGTCCTGAGGAGGGCCGTGCTGAACTCTGGGAATGTCCTGATTGGG 1267
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1268 CTTCACAACTAAAAGGCCTTCGCTTTTCCCTCAAGTCGGAATACATCCTCCCCCAAATGAAGGACGTGTTGTCT 1341
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1342 TCTGTGTTTTTCTTTGTATGTGAGTGTGTCTCATATATAAACTTAGTCAAATGAGCTTCCCCACATCTAATTTA 1415
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1416 AAGCGAGCTGCAGTTCCCTGAAGAACTCTTAATTTGATAATAGAACCAAATTAACTGTTGGATGACATACGTTT 1489
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1490 GGTGATGATCCTGCCTTCCCCCAGAGGATGATTTCCCCTGGAGATTATTCTTAGGAGCTTCTCCATTGGAAACT 1563
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1564 TGTCACTTTCTAGAGTCTCTGCAACGCCTATGGCCTCAGCAGCCAGCATAGCAGGGCAGGGTGCCCGGGCTGGA 1637
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1638 GCAGCTAGGCTCCTGCAGAGGCACAGCTGGCTCCAGAGCACACGCCCTCTGGAAACTTCCTGTCTTATTTCTAA 1711
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1712 GTTTTGCAACCTAGGAAGACATTTTTTGAGAGGGATTTAAAAACAAAAATGTAGACACAAATTAAATATACTTT 1785
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1786 TGTTCTAAACTACTATAGAAAAAGAAGTTTTGAATTTTTTTTTTTTTTTTTTTGCTAAGATTTTCCTATAATTG 1859
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1860 GGAAGTTTGAGGCATCTGATGCTCTGCTGTGGATGGGGCTTAGTGGTATTTACCCGGTACATGAAATTGCCTTC 1933
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1934 ATTTTCCTCTGACTTCTCCCTAGGGAAACAGAAGGAATGAACGGGTCCACATCCCACCTTTGCAAAAATCCCAT 2007
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2008 GAGCTTTCCCTTGCCAGAGAGATGAGCTCTCTGGGGGGACAGCTGATTGGCTCTTCCTCTGAAAGGATGCCACC 2081
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2082 ATAATCTGTTTTACTTTCAGGTGTTCGTTGGGCTGCTTTGGGGGGGGGGTAAAAGTTCTCTGTTTACTGGTATG 2155
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2156 ATTTATGTAAGACAAGACTGAAAGGGGAATCAAGAAGGCTTGCTTGGTGGGAAAGCTATTTCCCAAAACTTTGG 2229
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2230 TTGGTGACATTTTGTTAGCCAGCCTGACTGTAATTCTAGGCTCTAACAGTGCCAAAAATCCTACATAGTTACTG 2303
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2304 ACAAGTGTGTGATCTCTTTGCAGTCACACCACCTGCTGCCTGAAAAGCAGACTCTTCCAAGTAATGGCAGAGGC 2377
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2378 AGAAAGCGGCCATGCATGCCATGTGTGGCCACTGTCCCTACTTCCTCCCGTCCCTTTCACAACTTGCTCTGTTC 2451
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2452 AGCCTTAATATTTCAAAGGCCTACAGTATAATAGGAGCTGAGCGTCTGGATCAAGTGTATCTCTTCTTTCATCC 2525
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2526 TTTCGGAAGAATGGAAGTTTCAGCACAACCCCGACATGTATATAAGCTGAAGGCAGGAAAATGTGGCCTGACAC 2599
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2600 TTCACATCCGTGCTTGACTTAATTGAACGACAGGGAAACACAGGGCTGCATCTGTGTTTTGCCCTCGACCATCT 2673
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2674 TATGTCTTAAGTGGAGCTATGAAATGTCACCCTGATACTCAGGAATTCTCATTGAGAGAAGGTGTGGGATACTT 2747
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2748 TTGTTCTAACTTGTTTAAATTCTTAATAAAGGTGTTTACACTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2821
Query 1102 --------------------- 1101
Sbjct 2822 AAAAAAAAAAAAAAAAAAAAA 2842
