Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_04772
- Subject:
- NR_135753.2
- Aligned Length:
- 5852
- Identities:
- 1006
- Gaps:
- 4846
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTCCCCCGCTTGGCTTCCAGCGCCGCTTGCGCTCCGGAGCGCTGGCTCTGCTGGCGCTGAGAAATGGACCAATT 74
Query 1 -----------------------------------------------ATGGCGTCCGAACTTTGTAAGACGATC 27
|||||||||||||||||||||||||||
Sbjct 75 TTGACAAGATATAGTGCTGCAGCGTGCCTGATGGGATATATTCAGTCATGGCGTCCGAACTTTGTAAGACGATC 148
Query 28 TCTGTGGCAAGGCTAGAAAAGCACAAGAATTTGTTCTTAAATTATAGGAATCTGCACCATTTTCCATTGGAGTT 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 TCTGTGGCAAGGCTAGAAAAGCACAAGAATTTGTTCTTAAATTATAGGAATCTGCACCATTTTCCATTGGAGTT 222
Query 102 ACTGAAAGATGAGGGACTGCAGTACTTGGAGAGACTCTATATGAAAAGGAACTCCCTGACATCCTTGCCAGAAA 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 ACTGAAAGATGAGGGACTGCAGTACTTGGAGAGACTCTATATGAAAAGGAACTCCCTGACATCCTTGCCAGAAA 296
Query 176 ACCTTGCTCAGAAGCTTCCAAACCTTGTGGAACTATACCTGCACTCAAATAACATAGTTGTGGTTCCGGAAGCC 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ACCTTGCTCAGAAGCTTCCAAACCTTGTGGAACTATACCTGCACTCAAATAACATAGTTGTGGTTCCGGAAGCC 370
Query 250 ATTGGGTCTCTTGTAAAACTCCAATGTCTGGATCTTAGTGACAATGCCTTAGAAATTGTTTGCCCAGAAATTGG 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 ATTGGGTCTCTTGTAAAACTCCAATGTCTGGATCTTAGTGACAATGCCTTAGAAATTGTTTGCCCAGAAATTGG 444
Query 324 TCGTCTGAGAGCTTTACGTCATCTTCGATTAGCTAATAACCAACTGCAATTCCTACCTCCAGAGGTTGGCGATT 397
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TCGTCTGAGAGCTTTACGTCATCTTCGATTAGCTAATAACCAACTGCAATTCCTACCTC--------------- 503
Query 398 TGAAGGAGCTGCAGACACTAGACATTTCTACCAATCGTTTGCTAACTTTACCCGAGAGGCTTCACATGTGCCTT 471
Sbjct 504 -------------------------------------------------------------------------- 503
Query 472 TCTCTGCAGTACCTCACTGTGGACCGAAATCGTCTATGGTATGTGCCGCGCCATCTCTGCCAGCTGCCCAGCCT 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 ------CAGTACCTCACTGTGGACCGAAATCGTCTATGGTATGTGCCGCGCCATCTCTGCCAGCTGCCCAGCCT 571
Query 546 CAATGAGCTCTCCATGGCTGGAAACCGTCTTGCATTTTTGCCACTTGATTTAGGTCGATCTCGAGAACTACAGT 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 CAATGAGCTCTCCATGGCTGGAAACCGTCTTGCATTTTTGCCACTTGATTTAGGTCGATCTCGAGAACTACAGT 645
Query 620 ATGTATACGTGGATAACAACATTCACCTGAAAGGCTTGCCATCTTATCTGTACAATAAAGTCATCGGGTGCAGT 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 ATGTATACGTGGATAACAACATTCACCTGAAAGGCTTGCCATCTTATCTGTACAATAAAGTCATCGGGTGCAGT 719
Query 694 GGCTGTGGTGCTCCCATTCAAGTTTCCGAGGTGAAGCTGCTTTCCTTTTCATCAGGGCAGCGAACCGTTTTCCT 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GGCTGTGGTGCTCCCATTCAAGTTTCCGAGGTGAAGCTGCTTTCCTTTTCATCAGGGCAGCGAACCGTTTTCCT 793
Query 768 CCCAGCTGAGGTGAAGGCCATAGGGACGGAGCATGATCACGTCCTCCCTCTGCAGGAATTGGCTATGAGAGGGC 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 CCCAGCTGAGGTGAAGGCCATAGGGACGGAGCATGATCACGTCCTCCCTCTGCAGGAATTGGCTATGAGAGGGC 867
Query 842 TGTATCATACCTACCACAGCTTGCTGAAAGATTTGAACTTTCTGTCTCCAATCTCATTACCCAGAAGTCTCCTA 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 TGTATCATACCTACCACAGCTTGCTGAAAGATTTGAACTTTCTGTCTCCAATCTCATTACCCAGAAGTCTCCTA 941
Query 916 GAGCTGCTGCACTGCCCTCTGGGGCACTGTCATCGGTGTAGTGAGCCTATGTTTACCATCGTCTACCCCAAGCT 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 GAGCTGCTGCACTGCCCTCTGGGGCACTGTCATCGGTGTAGTGAGCCTATGTTTACCATCGTCTACCCCAAGCT 1015
Query 990 CTTTCCCTTGAGAGAGACGCCAATGGCAGGGCTGCACCAGTGGAAGACAACTGTTAGTTTTGTGGCTTACTGCT 1063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 CTTTCCCTTGAGAGAGACGCCAATGGCAGGGCTGCACCAGTGGAAGACAACTGTTAGTTTTGTGGCTTACTGCT 1089
Query 1064 GCTCCACCCAGTGTCTGCAGACTTTTGACCTGCTGAGT------------------------------------ 1101
||||||||||||||||||||||||||||||||||||||
Sbjct 1090 GCTCCACCCAGTGTCTGCAGACTTTTGACCTGCTGAGTTGATAAACACTCAAGAACCTCAGGAGCGCTGCCAGC 1163
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1164 TTGACACTGGGGAATCCAGCCAGTCCAGCACACTCTTCCATCCTGTCCTGTCCAATGCGGGGGCACTGCAGAAC 1237
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1238 TCTCTAGAAATGTCATGATTGAGCTTCAGAGCTAAAATGCCTTCACCCTTCCCCCAAGTTGGAATATATCCTCC 1311
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1312 CCCAAATTAAGGACCCATTTGTCTTCTGTGTTTTTCCTTTTTATGTGAGTGTGTCTTTTACAGAAACCATTTAG 1385
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1386 ATTGATGGGCCTCCCCAAATCTAATTTAAAGCAAGTTTCCGGTCCTTGGAGAACAGTGACTTGATCATCTAGCC 1459
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1460 AGATTCCCTTTTGAACACACATACCTTCAGTGATGCTTCCTCTCCTCTCCCCTCCCTTGCTTTCCCCAGAGAGT 1533
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1534 TATTTCCCTGAGACCATGTTCTCCACAGTGTCTCCAGTGGAAACTTGTCAGTTTTTGAGGAGTTTCAGCAAACC 1607
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1608 CCGTGGCCTCAATGGTCTTGAGTAGCAGGGTGGGGCGCCTGAGTTGGCAGCAAAGTGAGGCTCCCATGGAGGCT 1681
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1682 CAGTGAGGGTCCCAGAGCACACACCCTCTGGAAAGTTCCAGCCTTGTTTATACGTTCTACAGTGTAGCAACAGA 1755
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1756 CTTTTGTGAGGGATTTTAAAAACAAAAATGTAGATTGTAATGAAATACACTTCCTGTTTTTTAAAAGTGTTTGC 1829
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1830 AGAAAAATGATTTTTGAAGTTTTTAAATTTCCTGATAAGATTTTTTTTATATGAGAAGAATTTGAGGAATATTT 1903
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1904 GAAGCTTTACAAGATCTGATTTTTTTCTTTCTCAATATAAAGTTTCCATACAATGAGAAAGGGGGAGAAAACAC 1977
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1978 ACATTGAAATAAGACCTCCGTGTTCTTTTTTGATGGGTTTATGATTCAGTTTATACTGACTTTGAAATATTTTT 2051
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2052 GTCACATGTGAAAGGCTTCAGCTACTTCCACTACTGGTTTTTTTTTGTTGTTGTTGAGACGGAGTCTCGCTCTG 2125
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2126 TCGCCCAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCC 2199
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2200 TGCCTCAGCCTCCCAAGTAGCTGGGACCACAGGCGCCCGCCACCACGCCCGGCTAATTTTTTGTATTTTTAGTA 2273
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2274 GAGACGGGGTTTCACCGTGTTAGCCGGGATGGTCTCGATCTCCTGACCTCGTGATCCGCACGCCTCGGCCTCCC 2347
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2348 AAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCACTACTGGTTTTTAACAGGATGATTCAAAGTAC 2421
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2422 AGCCCGTGCACATTTACTTCGTCACCTGGTGCACCACACTGTCTTCATGTTGGCCCTCGTTTCTTGTATACTTA 2495
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2496 GCTTACTGCCCAGATGCAACTGAGAAAATACAGGAAAAGCAGGTCCAAATTCAGCCTTCGACTTCTGCAAAAGT 2569
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2570 CCATAAACAGAAAGTCTGTGAGCCTCCACCCTGCCAGAAAGAACTCTTCATGAAGAAGTCACGTATTTGCTCTT 2643
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2644 CCTTTCAAAGGATGGCATTTTAATGTTGCTTTGCTGCCAGATGTTCATCTGCTTGCTGTGAAGTGATTCTTTTT 2717
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2718 TTAAAATGTTTTTTAATGATGTAAGTTTTCTAAAAGGCAGGGCTGAATGGAGAACCAAGAATTTGCTTGGTAGA 2791
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2792 AAAATTATTTTTTTTTAATTTCAGACTTATCAAAAATTTGGTTGAGGGAATTTTTATTAGCTGCCCTGACTTTA 2865
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2866 TAATGCTACGCTCTTAACAGTGCCAAAAATCCTACATAGTTACTGACAAATGTGTGATCTTTTTACAGTCACAA 2939
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2940 CACCTGCTGCCCGGAAAGCACACCGTCCACGTAGAATGGAGAAGGCAGAAAGTTACCGTGTGTTCCCACTGTAT 3013
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3014 CTGCACTGTTCTTACTTCCTCTTGTCCCTTTTCATATCTTGGTCTATTCAGCCTTAACATTTCAAAGGCTTATA 3087
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3088 GTAAAATAGGAACTGAAGATCTGTATCAAAATGTAACACTTTCATCCTTTGGAATAATTGAAGTTTAACATAAC 3161
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3162 CTCTACATGTATATAAGTTAGCTGGTGAAAATGTGGCATGAAACTTCACAATTGTGCTTCAGGCCTAAGTGACT 3235
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3236 GCTACCTATGATTTAAGTGACAGTAAATGTCTTGCTACATTTTTCTATTTCATCCTCTACAATCATATGTCATG 3309
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3310 GAATGGAGCTATGAAATGTGCTAACTTGGTATTCAGGATTCTCATTGTGATAAGGTGATACATTAGTTTTACCT 3383
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3384 TGTTTGAAATTTTACAAAAATGCTTACAATCCAGGCATTCTTTCTCTACCTATTATGAACTACGGTGTGTTAAA 3457
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3458 CAACAGCAGTGGGCTGGGCAGACAACCTTTGGGCAGTCTCAACCTTAATCCTTGGGTACAGCACCTGAACTTAA 3531
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3532 TTGATGAGAAGTGGAACTTAAGTGGTTTCCCTGGTGCTGTTCATTATGGAAATTTTATGCTGGATTTATCGATG 3605
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3606 TCATTCTTAATCTTTTGATACTATAAAGGAGTCTTACCAACTGGAGAAAATTTGCCTACATGCTATATATTTGA 3679
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3680 ATTGTGTCCAAAGCTTTGCAGAAAAGCAAATCTGAAGTTATTATATATGTTGTTTTCTTGAGCAACAGTTACAC 3753
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3754 TAGGTAGAAAAGTATTCACACAATAATAGTAATGCAAAAAAAGTGAGCTACTTGGAAAGTATCATCTCTGTTCA 3827
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3828 GGTAAGTTTACTTCAGTGAACTCTTGTGTGGTTAGCGATAAGTTTTAAAGTCCAGGATAGCCTCATGAGCATAG 3901
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3902 GCCTTCCTATGAAGTAGTGCAAAGGGGGCCGATTTTAGTGGATTACCCTATCAGTGTTCTTCAGTATGTCCAAT 3975
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3976 TGTTATCATACCAAAAACCTTAATTACATAACATTGTGTGGATGAAATGCTGCATCTTCAGTTAATACATGTTT 4049
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4050 TGAGCACATTCTTAAAATACATAATAATTAAATGATCCCTATTCAAAAGAACCCTGGCTTGGGTGGAGGATCCA 4123
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4124 CTCTGGCTAACGGATAAGAGTGATGAACTTCTTTGTTACCTGACCCTTCTCTTCTGGAAAAGTGAGGTGTACAT 4197
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4198 TAAACATCTTTTGGTCACCGTGCCTCACTAAGACCTTTCACATTCCAGCTTGTCCGACTAGTGTAATGTACCTC 4271
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4272 TCACTTCTGTTTTACGTTGAGCATTACGAATTAAAATCTTTACAGTCTAGGGGGAAAAAAAGGCTTCAATACCA 4345
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4346 GTTGGCTTATGAGGCTCTGCATATAATTTTCTCTAAAATATGTAACTATTTTGTAGTCTGTGGGGACTTTCAAA 4419
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4420 GCCAATTTTTAAAATTAGTAGTAGTAAAGGTTTTTCCCTTTCCTGAATGAAAAATCAGAAATTCTAATCTTTGC 4493
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4494 TATAAAGTACTTAAACACAATACATTGCCTCAGCATAAATAAAAACATTTTTATTAAGATGATTTATGAACATG 4567
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4568 GATTTCTAACTGGACCAACACTAATGTTGCAACCTGATAAAATTTGAGATGTAAATTCATTTCACAGACTCATA 4641
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4642 AACACACTCTCTTTAAGACTCTTCTTTAAATGGATCCTTACATTACCCTGCCTGTTTTATTATGCCTTCATTTT 4715
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4716 TGTGGTTTTCATTCACTCCTGCTTGCTTCTATTGAGGTTCTCCTACATTTCCCAGAAACTCAGTGAATATCTTG 4789
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4790 CCTTTTCTTCAAACAAAGGGGGTTTTTATAAAGTTTGTATTTTTGAAACTAGCTCTATGTCTATCTAAAAATCA 4863
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4864 AGTCTCGGCAGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCCGAGGAGGGCAGATCATCTGAGGTCAGG 4937
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4938 AGTTTGAGACCAGCCTGGCCAGCATGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGT 5011
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 5012 GGCGCGCACCTGCAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGCAGGAAGAGGTTG 5085
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 5086 CATTGAGCTGAGATCACGCCATTACACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAATCATT 5159
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 5160 CAAGTTTCACTGTGCCTACAGTGAGGAGCTACCTCCTTGTGTCATCAGCTAATAGATCTGAAAGTGATGCCGGT 5233
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 5234 GTCTCTAGGAAAGGAATTGATCATAGCCAAGTGACTGACATTCTCTCGGTCAGGAAAAGAGCTTGCTTCACAGC 5307
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 5308 CTTTGAAGTATGACTGTATGTGTGGTCCCCTTGTACTTTGGAGACAGAAGGTACTGGCAGCGAGTGTGGTGGAT 5381
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 5382 GGGCAGAAGGTGTAGCATTCGGAGATTATTTCTGTATGTAATTAAGAGACTTTCAAGGGTTAGCCAGACTTTTT 5455
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 5456 TCCACTCAAGTGTGGATTATCTTTGCTACCTGTGTTAAAGAATATCAGGTTTTGTTTCTTATTGTGATTTTTGA 5529
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 5530 GTCTAAATGATCCAAGATTTTTAAAATAGATACATAATGAAATCCAGGCCTCTGAAAAATTATGGCAACATTCA 5603
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 5604 TTTGGAGTGTGGCTAAAAACTCATACTTTATCCAATTTGGTTGCCTCTCTCAGTTACTGCAGTTTATAGAATAA 5677
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 5678 TTGAGCTTGAACCATGTGAATGCTCAGAATGTCAATGGTGGAGTATTTATTCAAGAGAAATGGCTGAATCTCGA 5751
Query 1102 ------ 1101
Sbjct 5752 TACGAA 5757
